Genomic Organization and Evolutionary Conservation of Plant D-Type Cyclins

by Margit Menges, Giulio Pavesi, Piero Morandini, Laszlo Bögre, and James A.H. Murray

PlantphysiolVolume 145(4):1558-1576

December 4, 2007

©2007 by American Society of Plant Biologists

Phylogenetic tree analysis of the 52 CYCD protein sequences from Arabidopsis (AtCYCD), poplar (PtCYCD), rice (OsCYCD), moss (P. patens, Phypa;CYCD), and algae (C. reinhardtii, CrCYCD; O.

tauri, OtCYCD).

Menges M et al. Plantphysiol 2007;145:1558-1576

©2007 by American Society of Plant Biologists

Genomic localization of poplar CYCD genes.

Menges M et al. Plantphysiol 2007;145:1558-1576

©2007 by American Society of Plant Biologists

Genomic domain structure of 52 CYCD genes of plants, moss, and algae.

Menges M et al. Plantphysiol 2007;145:1558-1576

©2007 by American Society of Plant Biologists

Protein sequence relationships and exon structures of Arabidopsis, moss, and human CYCDs. A, Aligned protein sequences are presented with the regions corresponding to successive exons

colored according to their homology to the six moss exons.

Menges M et al. Plantphysiol 2007;145:1558-1576

©2007 by American Society of Plant Biologists

Aligned sequences of CYCD3 cyclins from Arabidopsis, rice, and poplar in the cyclin_N domain as indicated in Supplemental Table S2.

Menges M et al. Plantphysiol 2007;145:1558-1576

©2007 by American Society of Plant Biologists

Protein structure and relationships of vascular plant CYCD. Left, Phylogenetic tree analysis of CYCD genes in each of the six defined subgroups was performed as described in Figure 1 using

the PHYML algorithm after multiple sequence alignment (ClustalW v 1....

Menges M et al. Plantphysiol 2007;145:1558-1576

©2007 by American Society of Plant Biologists

The linear Pearson coefficient of 86 core cell cycle genes with all genes represented by unique probes on the Affymetrix ATH1 GeneChip array over 1,730 experiments was calculated as

described in “Materials and Methods” and imported into GeneMaths (version 2...

Menges M et al. Plantphysiol 2007;145:1558-1576

©2007 by American Society of Plant Biologists