19
Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice 1 Naoki Kitabayashi 2,3 Magalie Barth 4 Tracy A. Briggs 1,5 Annabel C.E. Burton 6 Maria Luisa Carpanelli 7 Alfredo M. Cerisola 8 Cindy Colson 9 Russell C. Dale 10 Federica Rachele Danti 11,12,13 Niklas Darin 14 Begoña De Azua 15 Valentina De Giorgis 16 Christian G. L De Goede 17 Isabelle Desguerre 18 Corinne De Laet 19 Atieh Eslahi 20 Michael C. Fahey 21 Penny Fallon 22 Alex Fay 23 Elisa Fazzi 24 Mark P. Gorman 25 Nirmala Rani Gowrinathan 26 Marie Hully 18 Manju A. Kurian 11,12 Nicolas Leboucq 27 Jean-Pierre S-M Lin 28 Matthew A. Lines 29 Soe S. Mar 30 Reza Marooan 31 Laura Martí-Sanchez 32 Gary McCullagh 33 Majid Mojarrad 20 Vinodh Narayanan 34 Simona Orcesi 16 Juan Dario Ortigoza-Escobar 32 Belén Pérez-Dueñas 32 Florence Petit 9 Keri M. Ramsey 34 Magnhild Rasmussen 35 François Rivier 36,37 Pilar Rodríguez-Pombo 38 Agathe Roubertie 36,39 Tommy I. Stödberg 40 Mehran Beiraghi Toosi 41 Annick Toutain 42 Florence Uettwiller 43,44 Nicole Ulrick 45 Adeline Vanderver 45 Amy Waldman 45 John H. Livingston 46 Yanick J. Crow 1,2,3 1 Division of Evolution and Genomic Sciences, Manchester Academic Health Science Centre, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, United Kingdom 2 Laboratory of Neurogenetics and Neuroinammation, INSERM UMR 1163, Paris, France 3 Sorbonne-Paris-Cité, Institut Imagine, Hôpital Necker Enfants Malades, Assistance Publique-Hôpitaux de Paris, Paris Descartes University, Paris, France 4 Department of Genetics, CHU Angers, Angers, France 5 Manchester Centre for Genomic Medicine, Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Science Centre, St Marys Hospital, Manchester, United Kingdom 6 Department of Paediatrics and Child Health, St Georges University Hospitals NHS Foundation Trust, London, United Kingdom 7 Department of Child Neurology and Psychiatry, A. Manzoni Hospital, Lecco, Italy 8 Department of Pediatric Neurology, Facultad de Medicina, UDELAR, Montevideo, Uruguay 9 Clinique de Génétique, Hôpital Jeanne de Flandre, CHU Lille, Lille, France, 10 Institute for Neuroscience and Muscle Research, Childrens Hospital at Westmead, University of Sydney, Sydney, Australia, 11 Department of Developmental Neurosciences, Institute of Child Health, UCL, London, United Kingdom, 12 Department of Neurology, Great Ormond Street Hospital, London, United Kingdom, 13 Department of Paediatrics, Child Neurology and Psychiatry, Sapienza University, Rome, Italy, 14 Department of Pediatrics, Institute of Clinical Sciences, Sahlgrenska University Hospital, University of Gothenburg, Gothenburg, Sweden, Neuropediatrics 2017;48:166184. Address for correspondence Yanick J. Crow, MD, PhD, Laboratory of Neurogenetics and Neuroinammation, Institut Imagine, 3rd Floor, Room 309, 24 Boulevard du Montparnasse, 75015 Paris, France (e-mail: [email protected]). 15 Department of Pediatrics, Hospital Son Llátzer, Palma de Mallorca, Spain, 16 Child Neurology and Psychiatry Unit, C. Mondino National Neurological Institute, Pavia, Italy, 17 Department of Paediatric Neurology, Royal Preston Hospital, Preston, United Kingdom, 18 Department of Paediatric Neurology, Hôpital Necker-Enfants Malades, AP-HP, Paris, France, 19 Nutrition and metabolic Unit, Hôpital Universitaire des Enfants Reine Fabiola, Brussels, Belgium, 20 Department of Medical Genetics, School of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran, 21 Department of Paediatrics, Monash University, Melbourne, Australia, 22 Department of Paediatric Neurology, St Georges University Hospitals NHS Foundation Trust, London, United Kingdom, 23 Department of Neurology, University of California, California, San Francisco, United States, 24 Unit of Child Neurology and Psychiatry, Department of Clinical and Experimental Sciences, Civil Hospital, University of Brescia, Brescia, Italy, 25 Department of Neurology, Boston Childrens Hospital, Boston, United States, 26 Department of Neurology, Kaiser Permanente, Los Angeles, United States, 27 Neuroradiologie, CHU de Montpellier, Montpellier, France, 28 General Neurology and Complex Motor Disorders Service, Evelina Childrens Hospital, Guys & St ThomasNHS Foundation Trust, London, United Kingdom, received January 9, 2017 accepted after revision February 21, 2017 published online April 10, 2017 © 2017 Georg Thieme Verlag KG Stuttgart · New York DOI https:/doi.org/ 10.1055/s-0037-1601449. ISSN 0174-304X. Original Article 166 Downloaded by: Johns Hopkins University. Copyrighted material.

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Page 1: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

Genetic, Phenotypic, and Interferon BiomarkerStatus in ADAR1-Related Neurological DiseaseGillian I. Rice1 Naoki Kitabayashi2,3 Magalie Barth4 Tracy A. Briggs1,5 Annabel C.E. Burton6

Maria Luisa Carpanelli7 Alfredo M. Cerisola8 Cindy Colson9 Russell C. Dale10

Federica Rachele Danti11,12,13 Niklas Darin14 Begoña De Azua15 Valentina De Giorgis16

Christian G. L De Goede17 Isabelle Desguerre18 Corinne De Laet19 Atieh Eslahi20 Michael C. Fahey21

Penny Fallon22 Alex Fay23 Elisa Fazzi24 Mark P. Gorman25 Nirmala Rani Gowrinathan26

Marie Hully18 Manju A. Kurian11,12 Nicolas Leboucq27 Jean-Pierre S-M Lin28 Matthew A. Lines29

Soe S. Mar30 Reza Maroofian31 Laura Martí-Sanchez32 Gary McCullagh33 Majid Mojarrad20

Vinodh Narayanan34 Simona Orcesi16 Juan Dario Ortigoza-Escobar32 Belén Pérez-Dueñas32

Florence Petit9 Keri M. Ramsey34 Magnhild Rasmussen35 François Rivier36,37

Pilar Rodríguez-Pombo38 Agathe Roubertie36,39 Tommy I. Stödberg40 Mehran Beiraghi Toosi41

Annick Toutain42 Florence Uettwiller43,44 Nicole Ulrick45 Adeline Vanderver45 Amy Waldman45

John H. Livingston46 Yanick J. Crow1,2,3

1Division of Evolution and Genomic Sciences, Manchester AcademicHealth Science Centre, School of Biological Sciences, Faculty ofBiology, Medicine and Health, University of Manchester,Manchester, United Kingdom

2Laboratory of Neurogenetics and Neuroinflammation, INSERM UMR1163, Paris, France

3Sorbonne-Paris-Cité, Institut Imagine, Hôpital Necker EnfantsMalades, Assistance Publique-Hôpitaux de Paris, Paris DescartesUniversity, Paris, France

4Department of Genetics, CHU Angers, Angers, France5Manchester Centre for Genomic Medicine, Central ManchesterUniversity Hospitals NHS Foundation Trust, Manchester AcademicHealth Science Centre, St Mary’s Hospital, Manchester,United Kingdom

6Department of Paediatrics and Child Health, St George’sUniversity Hospitals NHS Foundation Trust, London,United Kingdom

7Department of Child Neurology and Psychiatry, A. ManzoniHospital, Lecco, Italy

8Department of Pediatric Neurology, Facultad de Medicina, UDELAR,Montevideo, Uruguay

9Clinique de Génétique, Hôpital Jeanne de Flandre, CHU Lille, Lille,France,

10 Institute for Neuroscience and Muscle Research, Children’s Hospitalat Westmead, University of Sydney, Sydney, Australia,

11Department of Developmental Neurosciences, Institute of ChildHealth, UCL, London, United Kingdom,

12Department of Neurology, Great Ormond Street Hospital, London,United Kingdom,

13Department of Paediatrics, Child Neurology and Psychiatry,Sapienza University, Rome, Italy,

14Department of Pediatrics, Institute of Clinical Sciences,Sahlgrenska University Hospital, University of Gothenburg,Gothenburg, Sweden,

Neuropediatrics 2017;48:166–184.

Address for correspondence Yanick J. Crow, MD, PhD, Laboratory ofNeurogenetics and Neuroinflammation, Institut Imagine, 3rd Floor,Room 309, 24 Boulevard du Montparnasse, 75015 Paris, France(e-mail: [email protected]).

15Department of Pediatrics, Hospital Son Llátzer, Palma de Mallorca,Spain,

16Child Neurology and Psychiatry Unit, C. Mondino NationalNeurological Institute, Pavia, Italy,

17Department of Paediatric Neurology, Royal Preston Hospital,Preston, United Kingdom,

18Department of Paediatric Neurology, Hôpital Necker-EnfantsMalades, AP-HP, Paris, France,

19Nutrition and metabolic Unit, Hôpital Universitaire des EnfantsReine Fabiola, Brussels, Belgium,

20Department of Medical Genetics, School of Medicine, MashhadUniversity of Medical Sciences, Mashhad, Iran,

21Department of Paediatrics, Monash University, Melbourne,Australia,

22Department of Paediatric Neurology, St George’s UniversityHospitals NHS Foundation Trust, London, United Kingdom,

23Department of Neurology, University of California, California, SanFrancisco, United States,

24Unit of Child Neurology and Psychiatry, Department of Clinical andExperimental Sciences, Civil Hospital, University of Brescia, Brescia,Italy,

25Department of Neurology, Boston Children’s Hospital, Boston,United States,

26Department of Neurology, Kaiser Permanente, Los Angeles,United States,

27Neuroradiologie, CHU de Montpellier, Montpellier, France,28General Neurology and Complex Motor Disorders Service, Evelina

Children’s Hospital, Guy’s & St Thomas’ NHS Foundation Trust,London, United Kingdom,

receivedJanuary 9, 2017accepted after revisionFebruary 21, 2017published onlineApril 10, 2017

© 2017 Georg Thieme Verlag KGStuttgart · New York

DOI https:/doi.org/10.1055/s-0037-1601449.ISSN 0174-304X.

Original Article166

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ohns

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Page 2: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

29Department of Pediatrics, University of Ottawa, Ottawa, Canada,30Department of Pediatric Neurology, St. Louis Children’s Hospital,

Washington University School of Medicine, St. Louis,United States,

31Medical Research, RILD Wellcome Wolfson Centre, Exeter MedicalSchool, Royal Devon and Exeter NHS Foundation Trust, Exeter,United Kingdom,

32Department of Child Neurology, Hospital Sant Joan de Déu,Esplugues de Llobregat, Catalonia, Spain,

33Department of Paediatric Neurology, Royal Manchester Children’sHospital, Manchester, United Kingdom

34Neurogenomics Division, Center for Rare Childhood Disorders, TGen –The Translational Genomics Research Institute, Phoenix, United States,

35Department of Clinical Neurosciences for Children, and Unit forCongenital and Hereditary Neuromuscular Disorders, OsloUniversity Hospital, Oslo, Norway,

36Department of Neuropédiatrie and CR Maladies Neuromusculaires,CHU de Montpellier, France,

37PhyMedExp, University of Montpellier, INSERM U1046, CNRS UMR9214, Montpellier, France,

38Centro de Diagnóstico de Enfermedades Moleculares, Centro deBiología Molecular Severo Ochoa, Universidad Autónoma Madrid,CIBERER, IDIPAZ, Madrid, Spain,

39 INSERM U1051, Institut des Neurosciences de Montpellier,Montpellier, France,

40Neuropediatric Unit, Karolinska University Hospital, Stockholm,Sweden,

41Department of Pediatric Neurology, Ghaem Medical Center, Schoolof Medicine, Mashhad University of Medical Sciences, Mashhad,Iran,

42Service de Génétique, CHU de Tours, Tours, France,43Pediatric Immunology-Hematology and Rheumatology Unit,

Institut Imagine, Hôpital Necker Enfants Malades, AssistancePublique-Hôpitaux de Paris, Paris, France,

44Department of Allergology and Clinical Immunology, CHRU Tours,Tours, France,

45Department of Pediatrics, Children’s Hospital of Philadelphia,Philadelphia, United States,

46Department of Paediatric Neurology, Leeds General Infirmary,Leeds, United Kingdom

Keywords

► Aicardi–Goutièressyndrome

► bilateral striatalnecrosis

► spastic paraparesis► dystonia► idiopathic basal

ganglia calcification

Abstract We investigated the genetic, phenotypic, and interferon status of 46 patients from 37families with neurological disease due to mutations in ADAR1. The clinicoradiologicalphenotype encompassed a spectrum of Aicardi–Goutières syndrome, isolated bilateralstriatal necrosis, spastic paraparesis with normal neuroimaging, a progressive spasticdystonic motor disorder, and adult-onset psychological difficulties with intracranialcalcification. Homozygous missense mutations were recorded in five families. Weobserved a p.Pro193Ala variant in the heterozygous state in 22 of 23 families withcompound heterozygous mutations. We also ascertained 11 cases from nine familieswith a p.Gly1007Arg dominant-negative mutation, which occurred de novo in fourpatients, and was inherited in three families in association with marked phenotypicvariability. In 50 of 52 samples from 34 patients, we identified amarked upregulation oftype I interferon-stimulated gene transcripts in peripheral blood, with a medianinterferon score of 16.99 (interquartile range [IQR]: 10.64–25.71) compared withcontrols (median: 0.93, IQR: 0.57–1.30). Thus, mutations in ADAR1 are associated witha variety of clinically distinct neurological phenotypes presenting from early infancy toadulthood, inherited either as an autosomal recessive or dominant trait. Testing for aninterferon signature in blood represents a useful biomarker in this context.

Introduction

Adenosine deaminases acting on RNA (ADARs) catalyze thehydrolytic deamination of adenosine to inosine in double-stranded RNA, and thereby potentially alter the informationcontent and structure of cellular RNAs.1ADAR1 is encoded bya single-copy gene that maps to human chromosome 1q21and is present in two main isoforms in mammalian cells. Inmice, a loss of ADAR1 activity leads to a dramatic upregula-tion of interferon-stimulated gene (ISG) expression, which isdependent on the editing activity of ADAR1 and specific tothe interferon-inducible full-length p150 isoform of theprotein.2–4

In 2012, we reported mutations in ADAR1 to cause aphenotype consistent with the infantile encephalopathyAicardi–Goutières syndrome (AGS), and demonstrated that,

similar to the ADAR1 null mouse, the mutant genotype wasassociatedwith anupregulationof type I interferon signaling.5

Further to this, in 2014, we described both bilateral striatalnecrosis (BSN), sometimes occurring after a trivial childhoodinfection, and otherwise nonsyndromic, slowly progressivespastic paraparesis associatedwith normal intellect occur dueto ADAR1 dysfunction, again in associationwith the enhancedexpression of type I interferon-induced gene transcripts.6–8

These data indicate that neurological disease can occurthrough inappropriate inductionof the innate immunesystemby self-derived nucleic acids.

Here, we present an update of our experience of screeningfor ADAR1 mutations, describing the clinical, radiological,molecular, and interferon biomarker characteristics of acohort of 46 patients from 37 families with neurologicaldysfunction due to mutations in ADAR1.

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Materials and Methods

Patients and MethodsWe ascertained clinical and molecular data through directcontact and/or via collaborating physicians. The study wasapproved by the Leeds (East) Research Ethics Committee(reference number 10/H1307/132), and the Comité de Pro-tection des Personnes (ID-RCB/EUDRACT: 2014-A01017-40).

A diagnosis of AGSwas suggested by characteristic clinicaland neuroimaging features including cerebral atrophy, whitematter disease, and intracranial calcification.9 BSN wasdiagnosed in the context of an acute or subacute onset of adystonic/rigid motor disorder associated with magnetic res-onance imaging features of bilateral striatal signal changewith or without swelling. Spastic paraparesis/tetraparesisand spastic dystonia were diagnosed according to clinicalsigns, in the presence of either normal neuroimaging or mildnonspecific changes sometimes including calcification of thebasal ganglia. Assessment of the motor and communicationstatus of patients over the age of 1 year was made using theGross Motor Function Classification System (GMFCS),10 theManual Ability Classification System (MACS),11 and theCommunication Function Classification System (CFCS).12

Mutational AnalysisPrimers were designed to amplify the coding exons of ADAR1(►Supplementary Table S1, online-only). Purified polymer-ase chain reaction (PCR) amplification products weresequenced using BigDye terminator chemistry and an ABI3130 DNA sequencer. Mutation description is based on thereference cDNA sequence NM_001111.4, with nucleotidenumbering beginning from the first A in the initiating ATGcodon. Variants were assessed using the in silico programsSIFT (http://sift.jcvi.org) and Polyphen2 (http://genetics.bwh.harvard.edu/pph2/), and population allele frequenciesobtained from the ExAC (http://exac.broadinstitute.org) andgnomAD (http://gnomad.broadinstitute.org) databases.

Interferon ScoreWhole blood was collected into PAXgene tubes, total RNAextracted using a PreAnalytix RNA isolation kit and RNAconcentration assessed using a spectrophotometer (FLUOs-tar Omega, Labtech). Quantitative reverse transcription PCR(qPCR) analysis was performed using the TaqMan UniversalPCR Master Mix (Applied Biosystems), and cDNA derivedfrom 40 ng total RNA. Using TaqMan probes for IFI27(Hs01086370_m1), IFI44L (Hs00199115_m1), IFIT1(Hs00356631_g1), ISG15 (Hs00192713_m1), RSAD2(Hs01057264_m1), and SIGLEC1 (Hs00988063_m1), the rel-ative abundance of each target transcript was normalized tothe expression level of HPRT1 (Hs03929096_g1) and 18S(Hs999999001_s1), and assessed with the Applied Biosys-tems StepOne Software v2.1 and DataAssist Software v.3.01.For each of the six probes, individual data were expressedrelative to a single calibrator. Relative quantification is equalto 2�ΔΔCt that is, the normalized fold change relative to thecontrol data. The median fold change of the 6 genes com-pared with the median of 29 previously collected healthy

controls is used to create an interferon score for eachindividual, with an abnormal interferon score being definedas greater thanþ2 standard deviations above themean of thecontrol group, that is, 2.466.

Results

Molecular DataWe collected data on 46 patients from 37 families of pan-ethnic origin with either biallelic mutations in ADAR1 (28families) or the single known dominant-negativemutation p.Gly1007Arg (nine families) (►Table 1; ►Fig. 1). In fourfamilies, the p.Gly1007A mutation was considered to haveoccurred de novo, while in three families, inheritance wasconfirmed or inferred (two paternal half-siblings born to anunaffected father unavailable for testing), with somaticmosaicism recorded in one case. In two families, inheritancecould not be determined becauseDNA fromboth parentswasnot available. We observed three distinct homozygous mu-tations in five families (two families each sharing the samemutation), in four of which the parents were knowinglyrelated. All of these mutations were missense. Of 23 familieswith compound heterozygous mutations, 22 carried the p.Pro193Ala mutation on one allele. In 13 of 22 familiessegregating this p.Pro193Ala substitution, the second mo-lecular lesion was a null or splicing variant.

Clinical Radiological PhenotypeClinical radiological characteristics of all patients are sum-marized in ►Table 2, and characteristic radiological appear-ances are summarized in►Fig. 2. Median age of disease onsetwas 14 months (range: birth–30 years). We observed 21 and25 affected females and males, respectively. Although spas-ticity and dystonia were common features present in themajority of patients, clinically and radiologically distinctphenotypes could be defined, including classical AGS (15patients), BSN (16 patients), apparently isolated spasticparaparesis (1 patient)/tetraparesis (2 patients), and a pro-gressive spastic dystonic motor disorder (7 patients). In twoof these latter cases, the initial presentation was of isolatedlower limb spasticity, with a dystonic component and in-volvement of the upper limbs only becoming evident severalyears later. Four patients demonstrated radiological featuresof both AGS and BSN. The mother of a child with an AGSpresentationwas diagnosed at the age of 30 yearswith subtlepsychological features and marked intracranial calcification.We identified three patients with significant neurologicaldisease (a spastic/dystonic phenotype) in the absence ofchanges on brain imaging at presentation.

A total of 25 patients were considered to have demon-strated normal development prior to disease onset, in 18 ofwhom there was a history of either vaccination (4 patients)or a notable infectious episode (14 patients) in the periodshortly preceding the development of clinical signs(►Fig. 3A). Several patients experienced a rapid onset ofdystonia/spasticity and loss of skills, with two patients beingadmitted to intensive care due to severe dystonic crisis.Others exhibited amore slowly progressive onset over weeks

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Table

1Family

structure,

ethn

icity,

andmolec

ular

data

ofasce

rtaine

dAD

AR1mutation-po

sitive

cases

AGS

number

Individu

als

tested

Consang

uinity

Ethnicity

cDNA

Protein

Alle

lic

status

Inhe

ritance

SIFT

Polyphen

2CADD

Phred

ExAc

freq

uen

cy

gnomAD

freq

uen

cy

AGS0

813A

,M,F

No

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.26

75G>A

p.Arg892

His

Het

Paternally

inhe

rited

Deleterious

0.01

Prob

ably

damag

ing

1.00

0

35Nov

el1/25

2010

AGS0

931A

,M,F

No

Italian

c.57

7C>G

p.Pro1

93Ala

Het

Paternally

inhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.26

08G>A

p.Ala87

0Thr

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS1

072A

,M,F

Yes

Pakistan

ic.33

37G>C

p.Asp111

3His

Hom

Both

parentshe

tDeleterious

0.02

Prob

ably

damag

ing

1.00

0

33Nov

elNov

el

AGS1

501A

,M,F

No

Brazilian

c.30

19G>A

p.Gly100

7Arg

Het

Deno

vo(paternity

confi

rmed

)

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS2

191A

Yes

Pakistan

ic.33

35A>T

p.Tyr111

2Phe

Hom

Not

tested

Tolerated0.17

Prob

ably

damag

ing

1.00

0

33Nov

elNov

el

AGS2

281A

,M,F

No

Indian

c.29

97G>T

p.Lys9

99Asn

Hom

Both

parentshe

tDeleterious

0.03

Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS2

511A

,M,F

No

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.26

15T>

Cp.Ile

872

Thr

Het

Paternally

inhe

rited

Deleterious

0.01

Prob

ably

damag

ing

1.00

0

26.9

1/12

1342

1/25

2270

AGS3

271A

,M,F

No

Italian/

Hispan

ic

c.57

7C>G

p.Pro1

93Ala

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.10

76_1

080d

elp.Lys3

59Argfs

� 14

Het

Paternally

inhe

rited

Fram

eshift

Fram

eshift

Fram

e-

shift

Nov

elNov

el

AGS4

302A

,M,F

No

Span

ish

c.57

7C>G

p.Pro1

93Ala

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.26

75G>A

p.Arg892

His

Het

Paternally

inhe

rited

Deleterious

0.01

Prob

ably

damag

ing

1.00

0

35Nov

el1/25

2010

AGS4

741A

,M,F

No

White

Europea

n

c.30

19G>A

p.Gly100

7Arg

Het

Deno

vo(paternity

confi

rmed

)

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS5

302A

,M

No

White

Europea

n

c.30

19G>A

p.Gly100

7Arg

Het

Presumed

inhe

rited

from

asym

ptom

atic

Father

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS5

501A

,M,F

No

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Paternally

inhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.25

65_2

568d

elp.Asn

857A

lafs

� 17

Het

Materna

llyinhe

rited

Fram

eshift

Fram

eshift

Fram

e-

shift

Nov

el1/30

224

AGS5

671A

,M,F

No

c.51

8A>G

p.Asn

173S

erHet

Paternally

inhe

rited

N/A

24.3

34/121

366

(Con

tinue

d)

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Table

1(Con

tinue

d)

AGS

num

ber

Individuals

tested

Con

sangu

inity

Ethnicity

cDNA

Protein

Alle

lic

status

Inhe

ritance

SIFT

Polyph

en2

CADD

Phred

ExAc

freq

uen

cy

gnomAD

freq

uenc

y

Greek

/

Leban

ese

Prob

ably

damag

ing

0.99

9

144/28

2658

1

hom

c.25

15de

lp.Th

r839

Profs�6

Het

Materna

llyinhe

rited

Fram

eshift

Fram

eshift

Fram

e-

shift

Nov

elNov

el

AGS5

821A

No

White

Europe

an

c.57

7C>G

p.Pro1

93Ala

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.26

47_2

648d

upp.Val88

4Serfs

� 12

Het

Not

know

nFram

eshift

Fram

eshift

Fram

e-

shift

Nov

elNov

el

AGS6

632A

,M,F

No

White

Europe

an

c.57

7C>G

p.Pro1

93Ala

Het

Paternally

inhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.16

30C>T

p.Arg544

�Het

Materna

llyinhe

rited

Stop

Stop

Stop

Nov

el2/25

2366

AGS6

791A

No

White

Europe

an

c.57

7C>G

p.Pro1

93Ala

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.35

56A>G

p.Lys1

186G

luHet

Not

know

nTo

lerated0.11

Prob

ably

damag

ing

0.99

9

31Nov

elNov

el

AGS6

991A

,M,F

No

White

Europe

an

c.30

19G>A

p.Gly100

7Arg

Het

Deno

vo(gen

otyp

ing

notun

dertake

n)

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS7

031A

No

Asian

/

White

Europe

an

c.57

7C>G

p.Pro1

93Ala

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.31

00A>G

p.Met10

34Val

Het

Not

know

nDeleterious

0.03

Possibly

damag

ing

0.76

0

25.8

Nov

elNov

el

AGS7

201A

,M,F

No

White

Europe

an

c.57

7C>G

p.Pro1

93Ala

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.22

50de

lp.Gly751

Aspfs

� 42

Het

Deno

vo(gen

otyp

ing

notun

dertake

n)

Fram

eshift

Fram

eshift

Fram

e-

shift

Nov

elNov

el

AGS7

591A

,M,F

No

White

Europe

an

c.57

7C>G

p.Pro1

93Ala

Het

Paternally

inhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.29

02G>A

p.Asp968

Asn

Het

Materna

llyinhe

rited

Tolerated0.06

Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS7

651A

No

White

Europe

an

c.57

7C>G

p.Pro1

93Ala

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.55

6C>T

p.Gln18

6�Het

Not

know

nStop

Stop

Stop

Nov

elNov

el

AGS7

881A

,M,F

No

White

Europe

an

c.57

7C>G

p.Pro1

93Ala

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.13

86_1

390d

elp.Asp462

Glufs

� 2Het

Deno

vo(paternity

confirm

ed)

Fram

eshift

Fram

eshift

Fram

e-

shift

Nov

elNov

el

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al.170

Dow

nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 6: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

Table

1(Con

tinue

d)

AGS

numbe

r

Individu

als

tested

Consang

uinity

Ethnicity

cDNA

Protein

Alle

lic

status

Inhe

ritance

SIFT

Polyphen

2CADD

Phred

ExAc

freq

uenc

y

gnomAD

freq

uen

cy

AGS8

101A

,MA,F

No

White

Europea

n

c.30

19G>A

p.Gly100

7Arg

Het

Inhe

ritedfrom

symp-

tomatic

mothe

r

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS9

431A

,M,F

No

North

African

c.30

19G>A

p.Gly100

7Arg

Het

Deno

vo(gen

otyp

ing

notun

dertake

n)

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS1

115

1A,M

,FYe

sPe

rsian

c.29

97G>T

p.Lys9

99Asn

Hom

Both

parentshe

tDeleterious

0.03

Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS1

170

1ANo

Asian

c.57

7C>G

p.Pro1

93Ala

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.31

00A>G

p.Met10

34Val

Het

Not

know

nDeleterious

0.03

Possibly

damag

ing

0.76

0

25.8

Nov

elNov

el

AGS1

315

2A,M

,F

(mos

aic)

No

White

Europea

n

c.30

19G>A

p.Gly100

7Arg

Het

Father

mos

aic

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS1

456

1ANo

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.30

20–3

C>G

Splicing

Het

Not

know

nSp

licing

Splicing

Splicing

Nov

elNov

el

AGS1

507

1A,M

,FNo

Asian

/

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.27

63–2

A>G

Splicing

Het

Paternally

inhe

rited

Splic

ing

Splicing

Splicing

Nov

elNov

el

AGS1

537

1ANo

White

Europea

n

c.30

19G>A

p.Gly100

7Arg

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

AGS1

542

2A,M

,FYe

sAsian

c.33

35A>T

p.Tyr111

2Phe

Hom

Both

parentshe

tTo

lerated0.17

Prob

ably

damag

ing

1.00

0

33Nov

elNov

el

AGS1

824

1ANo

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Paternally

inhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.10

84_1

085d

elp.Arg362

Aspfs

� 12

Het

Materna

llyinhe

rited

Fram

eshift

Fram

eshift

Fram

e-

shift

Nov

elNov

el

AGS1

980

1ANo

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.21

30du

pCp.Asn

711G

lnfs

� 33

Het

Not

know

nFram

eshift

Fram

eshift

Fram

e-

shift

Nov

elNov

el

AGS1

989

1A,M

,FNo

South

American

c.57

7C>G

p.Pro1

93Ala

Het

Paternally

inhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.21

87_2

198d

e-

linsG

T

p.Gly730

Cysfs�60

Het

Materna

llyinhe

rited

Fram

eshift

Fram

eshift

Fram

e-

shift

Nov

elNov

el

AGS2

007

1ANo

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Not

know

nDeleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

(Con

tinu

ed)

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al. 171

Dow

nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 7: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

or months. Definite clinical progression beyond the initialpresentation was recorded in 16 cases. Nine patients aredeceased, between the ages of 10months and 19 years, six ofwhom had early-onset disease consistent with AGS.

An assessment of gross motor function, manual ability,and communication status at last contact was made in 45patients, of whom 27 were recorded to have none of anypurposeful gross motor, hand and communication function(score of 5 on all three scales) (►Fig. 3B). Five patients wereable to walk with no or some support (GMFCS I–III). Elevenpatients were capable of effective sender and receiver com-munication (CFCS I–III). Although formal testing was notundertaken, seven patients were considered to have normalintellectual function.

Five patients were reported to demonstrate hypo/hyper-pigmentation consistent with dyschromatosis symmetricahereditaria (DSH) 1, and two patients were described withchilblain-like vasculitic lesions. Four patients were docu-mentedwith autoimmune hemolytic anemia. Glaucomawasnot recorded in any patient.

Interferon StatusWe derived 52 interferon scores from 34 patients, 50 ofwhichwere abnormal, with amedian interferon score acrossthe group of 16.99 (interquartile range [IQR]: 10.64–25.71)compared with controls (median: 0.93, IQR: 0.57–1.30)(►Fig. 4). Positive scores were observed up to 25 years afterdisease onset. We also tested 20 interferon scores from 16parental carriers of a recessive mutation in ADAR1. Twosamples from seven parents heterozygous for the recurrentp.Pro193Ala mutation demonstrated a positive interferonscore, versus six samples from nine parents carrying adifferent mutation (►Supplementary Fig. S1, online-only).

Discussion

In 2012, ADAR1 mutations were described in the context ofthe early-onset encephalopathy AGS, associated with thepresence of intracranial calcification, white matter disease,and severe developmental delay.5 Subsequently, in 2014,mutations in ADAR1 were also shown to underlie cases ofapparently nonsyndromic BSN, and of isolated spastic para-paresis with normal neuroimaging.6,7 Here, we confirmthese associations, thus emphasizing the need to considerADAR1-related disease in several distinct clinical scenariostriggering different investigative algorithms. Furthermore,we now describe a patient with a dominant-negative muta-tion in ADAR1 demonstrating an adult-onset phenotypeevocative of “idiopathic” basal ganglia calcification charac-terized by intracranial calcification and subtle psychologicaldisturbance. Our clinical and radiological findings highlightthe propensity of ADAR1-related disease to incur basalganglia dysfunction, and the value of basal ganglia calcifica-tion, frequently only appreciated on computed tomography,as a diagnostic indicator. In general, mutations in ADAR1should be considered in the context of a motor disordercharacterized by spasticity and dystonia. The onset of diseasecan occur after a period of normal development, sometimesTa

ble

1(Con

tinue

d)

AGS

num

ber

Individu

als

tested

Cons

angu

inity

Ethn

icity

cDNA

Protein

Alle

lic

status

Inheritan

ceSIFT

Polyph

en2

CADD

Phred

ExAc

freq

uen

cy

gnomAD

freq

uen

cy

c.98

2C>T

p.Arg328

�Het

Not

know

nStop

Stop

Stop

Nov

el1/25

2210

AGS2

009

1A,M

,FNo

White

Europea

n

c.57

7C>G

p.Pro1

93Ala

Het

Paternally

inhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

23.9

260/

1214

02

602/28

2636

1

hom

c.27

46C>T

p.Arg916

Trp

Het

Materna

llyinhe

rited

Deleterious

0Prob

ably

damag

ing

1.00

0

35Nov

elNov

el

AGS2

010

1A,M

No

Hispan

icc.30

19G>A

p.Gly100

7Arg

Het

MWT,

Fno

ttested

Deleterious

0Prob

ably

damag

ing

1.00

0

34Nov

elNov

el

Abb

reviations

:A,affected

;F,father;Het,he

terozygo

us;Hom

,ho

moz

ygou

s;M,mothe

r;MA,mothe

raffected

;WT,

wild

type

.Note:

Nuc

leotidenu

mberingba

sedon

tran

script

ADAR

1NM_0

0111

1.4.ExAcbrow

serBe

tave

rsionacce

ssed

onOctob

er28

,20

16(http://exac.broad

institute.org),gn

omAD

brow

serβve

rsionacce

ssed

onOctob

er28

,20

16(http://gn

omad

.broad

institute.org).

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al.172

Dow

nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 8: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

associated with a rapid loss of skills, or a much slowerprogression over many years. Assessments using the GMFCS,MACS, and CFCS rating scales indicate that disease outcomein the cases thatwehave ascertained is frequently severe. It isof note that we observed cases with completely preservedintellect þ/� normal neuroimaging in the face of significantmotor disability.

Our own research focus is biased toward the ascertain-ment of pediatric disease. However, Tojo et al described afemale patient with the dominant-negative p.Gly1007Argmutation, presenting at the age of 17 years with gait distur-bance and dystonic posturing of the legs, who experiencedintellectual deterioration from 21 years of age, and becamewheelchair bound a year later.13 Together with our observa-tion of an adult female whose clinical phenotype onlybecame evident at the age of 30 years, it is clear that lateronset disease can occur due to ADAR1 deficiency. This lattercase also illustrates the significant intrafamilial variabilitywhich can be seen in association with ADAR1 dysfunction,the mother presenting in adulthood with subtle psychologi-cal disturbance, while her son experienced a devastatingearly-onset encephalopathy.

ADAR1-related neurological disease can be inherited aseither an autosomal recessive or autosomal dominant trait.We observed homozygosity for amissensemutation infive of28 families segregating recessive disease. As previouslysuggested, the absence of patients with homozygous nullmutations indicates that, as for the ADAR1 null mouse,complete loss of ADAR1 protein activity is likely embryoniclethal.5 Our molecular data reveal a remarkably high fre-quency of the p.Pro193Ala substitution, seen in 22 of 23families with compound heterozygous molecular lesions inADAR1. This mutation, which is recorded on 602 of 282,636alleles in the gnomAD database, was not observed in thehomozygous state in our cohort. That this variant was seen incombinationwith a nullmutation in 13 families suggests thathomozygosity for the p.Pro193Ala allele leads to a milder,

later onset, or distinct phenotype not ascertained here, ormay not be associated with disease. Perhaps of note, thegnomAD database includes one individual homozygous forthis mutation. Finally, our molecular data highlight thedominant-negative p.Gly1007Argmutation, which can occurde novo, or be inherited with variable expression and/ornonpenetrance at least into mid-adult life. The proximity ofGly1007 to the backbone of its RNA ligand, and the possibili-ty for an arginine residue to make polyvalent interactionsthere suggests a mechanism whereby Arg1007 might bindmore tightly to RNA and thus act as a competitive inhibitor ofwild-type protein, while being itself catalytically inactive.14

In keeping with thismodel, we previously demonstrated thata plasmid expressing Gly1007Arg showed stronger inhibi-tion of wild-type ADAR1 than equivalent amounts of aplasmid expressing catalytic inactive ADAR1.5

More than 130 different ADAR1 mutations have beendocumented in patients with DSH, an autosomal-dominantdisorder characterized by the childhood onset of hypopig-mented and hyperpigmented macules on the face and dorsalaspects of the extremities.15 DSH has only very rarely beenreported outside of Japan and China, and evenwithin identi-fied families, a marked variability in expression is wellrecognized. In our series, five patients were noted to dem-onstrate pigmentary lesions consistent with DSH. The fre-quent observation of stop and frameshift variants in DSHindicates haploinsufficiency as the likely molecular patholo-gy, consistent with the recent confirmation of our previoussuggestion that two individuals with DSH would be at one infour risk of a pregnancy with ADAR1-related neurologicaldisease.16

Loss-of-function mutations in ADAR1 have been classifiedwithin the so-called type I interferonopathy grouping, anovel set of inborn errors of immunity where it is proposedthat an upregulation of type I interferon signaling is centralto disease pathogenesis.17,18 The AGS phenotype can arisedue to mutations in any one of seven genotypes within this

Fig. 1 Schematic of ADAR1 gene showing mutations (according to protein nomenclature) ascertained in the present study. Missense andnonsense mutations are annotated above and below, respectively. Numbers in brackets indicate the number of families in which each mutationwas observed. †Indicates mutation acting as a dominant negative.

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al. 173

Dow

nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 9: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

Table

2Clin

ical

andradiolog

ical

data

relating

toasce

rtaine

dAD

AR1mutation-po

sitive

cases

AGSnu

m-

ber

Individu

alSe

xDev

elop-

men

tal

status

prior

toons

et

Possible

trigge

r

Ageat

in-

itial

asce

rtain-

men

t

Featuresat

presen

ta-

tion

Curren

tag

e/

ageat

death

(cau

sewere

know

n)

Prog

res-

sive

course

Statusat

last

con-

tact

Neu

roim

a-

ging

Interferon

scores

(age

,de

ci-

malized

years)

GMFC

SMACS

CFC

SSu

mmary

AGS0

81P1

FDelay

edNo

5mo

DD,dy

sto-

nia,

irritability

Diedag

ed17

y

Yes

SDTwith

seve

reID

Cha

racter-

isticof

AGS

24.267

(14.53

);

53.356

(15.01

);

45.676

(15.78

)

VV

VAGS

P2F

Delay

edNo

5mo

DD,dy

sto-

nia,

irrita-

bility,

mi-

croc

epha

ly

Diedag

ed23

mo

Yes

SDTwith

seve

reID

Cha

racter-

isticof

AGS

NT

VV

VAGS

P3M

Diagno

sed

atbirth

No

Neo

natal

RaisedCSF

IFNat

birth

withtran

-

sien

t

thrombo

cy-

tope

niaan

d

petech

iae

9y

Not

obvious

SDTwith

seve

reID

Cha

racter-

isticof

AGS

37.822

(4.82);

21.590

(5.28)

VV

VAGS

AGS0

93P1

MDelay

edNo

1mo

DD,irrita-

bility,

slee

p

andfeed

ing

disturba

nce

20y

Not

obvious

SDTwith

seve

reID

Cha

racter-

isticof

AGS

andBS

N

25.608

(15.26

);

46.665

(16.59

)

VV

VAGS/BS

N

AGS1

07P1

FDelay

edNo

<7mo

DD,dy

sto-

nia,

irrita-

bility,

mi-

croc

epha

ly

Diedag

ed19

y

Not

obvious

SDTwith

seve

reID;

AIHA

Cha

racter-

isticof

AGS

64.22

(15.26

)

VV

VAGS

P2F

Delay

edNo

Neo

natal

DD,dy

sto-

nia,

irrita-

bility,

mi-

croc

epha

ly

14y

Not

obvious

SDTwith

seve

reID;

AIHA

Cha

racter-

isticof

AGS

NT

VV

VAGS

AGS1

50P1

FMild

delay

No

18mo

Loss

of

head

con-

trol,sitting

andsp

eech

15y

No

SDTwith

someID

Somewhite

matterdis-

ease

and

calcifica-

tion

ofGP

14.69

(10.88

)

VV

VAGS

AGS2

19P1

MDelay

edNo

<6mo

DD,po

or

head

control

Diedag

ed6y

Not

obvious

SDTwith

seve

reID;

AIHA

Cha

racter-

isticof

AGS

NT

VV

VAGS

AGS2

28P1

FDelay

edNo

Pren

atal

IUGR,

Diedag

ed10

mo

Not

obvious

SDTwith

seve

reID

Cha

racter-

isticof

AGS

NT

<1year

<1year

<1year

AGS

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al.174

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nloa

ded

by: J

ohns

Hop

kins

Uni

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Table

2(Con

tinue

d)

AGSnu

m-

ber

Individual

Sex

Dev

elop

-

men

tal

status

prior

toon

set

Possible

trigger

Age

atin-

itial

ascertain-

men

t

Features

at

presen

ta-

tion

Curren

tag

e/

ageat

death

(cau

sewere

known)

Progres

-

sive

course

Status

at

last

con-

tact

Neu

roim

a-

ging

Interferon

scores

(age

,de

ci-

malized

years)

GMFC

SMACS

CFC

SSu

mmary

thrombo

cy-

tope

nia,

HSM

AGS2

51P1

FNorm

alVaricella

infection

9mo

Loss

ofskills

over

afew

wee

ks

12y

Not

obviou

s

SDTwith

someID;C

B

BSN

28.367

(8.1);

12.301

(9.27)

VV

IVBS

N

AGS3

27P1

MDelayed

Possible

vi-

ralinfection

(otitis

med

ia)

8mo

DD,e

n-

cepha

lop-

athy

,

irritability

8y

Not

obviou

s

SDTwith

seve

reID;

DSH

AGSwith

featuresof

BSN

23.382

(4.07);

9.40

2

(8.52)

VV

VAGS/BS

N

AGS4

30P1

FDelayed

No

<2mo

DD,d

ysto-

nia,

irrita-

bility,

mi-

croc

epha

ly

Diedag

ed6y

Unc

ertain

SDTwith

seve

reID

Charac

ter-

isticof

AGS

8.29

6

(4.75);

21.538

(5.53)

VV

VAGS

P2F

Delayed

No

<2mo

DD,d

ysto-

nia,

irrita-

bility,

mi-

croc

epha

ly

9y

Not

obviou

s

SDTwith

seve

reID

Charac

ter-

isticof

AGS

12.444

(4.75);

14.306

(5.53)

VV

VAGS

AGS4

74P1

MNorm

alVaccina

tion

4mo

Nystagm

us,

gros

san

d

fine

motor

delay

8y

Yes,

with

worsen

ing

resp

iratory

func

tion

andov

erall

neurologi-

cald

eterio-

ration

SDTwith

seve

reID

Charac

ter-

isticof

AGS

20.961

(5.42);

32.319

(5.88);

49.463

(6.02)

VV

VAGS

AGS5

30P1

FNorm

alNo

5y

Suba

cute

loss

ofskills

beco

ming

rigidov

era

fewmon

ths

17y

Yes

SDTwith

someun

-

derstand

-

ing

BSN

12.502

(13.41

)

VV

VBS

N

P2F

Norm

alNo

1y

Suba

cute

loss

ofskills

beco

ming

rigidov

era

fewmon

ths

29y

Yes

SDTwith

someun

-

derstand

-

ing

BSN

23.385

(26.21

)

VIV

IVBS

N

AGS5

50P1

MNorm

alD

&V

16mo

Sudd

en-on-

setmotor

regression

Diedag

ed9y

(pne

umon

ia)

Yes

SDTwith

some

BSN

6.42

9

(8.39)

VV

VBS

N (Con

tinue

d)

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al. 175

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nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 11: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

Table

2(Con

tinue

d)

AGSnu

m-

ber

Individu

alSe

xDev

elop

-

men

tal

status

prior

toon

set

Possible

trigger

Age

atin-

itial

ascertain-

men

t

Features

at

presen

ta-

tion

Curren

tag

e/

ageat

death

(cau

sewere

known)

Progres

-

sive

course

Status

at

last

con-

tact

Neu

roim

a-

ging

Interferon

scores

(age

,de

ci-

malized

years)

GMFC

SMACS

CFC

SSu

mmary

under-

stan

ding

AGS5

67P1

MMild

delay

Bronc

hioli-

tis

9mo

Sudd

enon

-

setmotor

regression

6y

Yes

SDTwith

mod

erate

ID;DSH

BSN

36.387

(2.81)

VV

VBS

N

AGS5

82P1

MNorm

alNo

14mo

Loss

ofskills

Diedag

ed10

y

Yes

SDTwith

mod

erate

ID

BSN

NT

VV

VBS

N

AGS6

63P1

MNorm

alURTI

11mo

Sudd

enon

-

setmotor

regression

12y

No

SDTmod

er-

ateID

BSN

NT

IVIII

IIIBS

N

P2M

Norm

alURTI

11mon

ths

Sudd

enon

-

setmotor

regression

Diedag

e18

years

Not

obviou

s

SDT

BSN

38.13

(17.53

)

VV

IVBS

N

AGS6

79P1

FNorm

alUnspec

ified

viral

infection

18mo

Sudd

enon

-

setmotor

regression

4y

Yes,

then

some

reco

very

Dystonic

gaitan

d

clum

sy

hand

fing

er

mov

e-

men

ts;in-

telle

ctua

lly

norm

al

BSN

3.80

2

(1.66)

IIIII

IIIBS

N

AGS6

99P1

MNorm

alNo

2y

Falling

8y

Yes

Major

LL

spasticity;

intelle

ctua

l-

lyno

rmal

Norm

al16

.833

(4.91)

III

ISP

AGS7

03P1

MMild

delay

No

2y

Loss

ofskills

over

afew

wee

ks

11y

Yes

SDTwith

seve

reID

Initially

structurally

norm

al

MRI;BG

calcifica

-

tion

noted

2years

later

20.427

(8.44);

29.817

(8.44)

VIV

IIISD

T

AGS7

20P1

FNorm

alUnspec

ified

viral

infection

18mo

Rapidloss

ofskills

9y

No

SDT;

intel-

lectua

lly

norm

al;

DSH

BSN

12.057

(6.90)

VV

IIIBS

N

AGS7

59P1

FNorm

alURTI

14mo

Motor

re-

gression

6y

No

SDT;

intel-

lectua

lly

norm

al

Calcifica-

tion

of

11.048

(4.09);

IIIII

IIISD

T

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al.176

Dow

nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 12: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

Table

2(Con

tinue

d)

AGSnu

m-

ber

Individu

alSe

xDev

elop

-

men

tal

status

prior

toons

et

Possible

trigger

Age

atin-

itial

ascertain-

men

t

Features

at

presen

ta-

tion

Curren

tag

e/

ageat

death

(cau

sewere

known)

Progres

-

sive

course

Status

at

last

con-

tact

Neu

roim

a-

ging

Interferon

scores

(age

,de

ci-

malized

years)

GMFC

SMACS

CFC

SSu

mmary

andspee

ch

arrest

caud

ate

and

putamen

18.633

(4.53)

AGS7

65P1

FNorm

alURTI

11mo

Rapidloss

ofskills

7y

No

SDTwith

someID

BGsign

al

chan

ges

andatro-

phywith

subc

ortical

hypo

myeli-

nation

NT

IVV

IVSD

T

AGS7

88P1

FNorm

alURTI/m

en-

ingitisC

vaccination

15mo

Acu

tere-

gression,

dyston

ia,

extra-py

ra-

midal

mov

e-

men

ts,oro-

facial

dyskinesia

3y

Not

obviou

s

SDTwith

severe

ID

BSN

1.99

(1.29);

4.59

(2.46)

VV

VBS

N

AGS8

10P1

(son

toP2

)M

Mild

delay

URTI

12mo

Rapidpsy-

chom

otor

regression

,

axialh

ypo-

tonia,

spas-

ticdy

ston

ic

tetrap

are-

sis

9y

Not

obviou

s

SDTwith

severe

ID

Charac

ter-

isticof

AGS

40.571

(7.13);

14.851

(7.27)

VV

VAGS/BS

N

P2(m

othe

rto

P1)

FNorm

alNo

30y

Pain,fa-

tigu

e,an

xi-

ety,

slee

p

prob

lems

35y

Possibly

Norm

al

clinical

ex-

amination;

subtle

psy-

cholog

ical

difficu

lties

Norm

alex

-

cept

forBG

,

WM,an

d

Cbcalcifi-

cation

25.743

(33.34

);

12.836

(33.48

)

II

IICCwith

psychiatric

features

AGS9

43P1

MNorm

alVaccination

22mo

SP13

yYe

s,de

vel-

oping

asym

metric

dyston

iaof

uppe

rlim

bs

7yafter

initialp

re-

sentation

SDT;

intel-

lectua

lly

norm

al

Someco

rti-

cala

trop

hy

withBG

and

WM

calcifi-

cation

24.753

(11.75

);

15.074

(12.11

)

IIII

ISP

beco

m-

ingSD

T

withpre-

served

intelle

ct

(Con

tinue

d)

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al. 177

Dow

nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 13: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

Table

2(Con

tinue

d)

AGSnu

m-

ber

Individu

alSe

xDev

elop-

men

tal

status

prior

toons

et

Possible

trigge

r

Ageat

in-

itial

asce

rtain-

men

t

Featuresat

presen

ta-

tion

Curren

tag

e/

ageat

death

(cau

sewere

know

n)

Prog

res-

sive

course

Statusat

last

con-

tact

Neu

roim

a-

ging

Interferon

scores

(age

,de

ci-

malized

years)

GMFC

SMACS

CFC

SSu

mmary

AGS1

115

P1M

Unk

now

nNo

4mo

Hyp

oton

ia

and

dyston

ia

2y

Not

obvious

SDTwith

severe

ID

Cha

racter-

isticof

AGS

NT

VV

VAGS

AGS1

170

P1F

Norm

alURTI

9mo

Acu

tere-

gression

withdy

sto-

niane

cessi-

tating

ICU

admission

2y

Not

obvious

SDTwith

severe

ID

Initialb

ilat-

eral

high

sign

alan

d

swellin

gof

BGpro-

gressing

to

extensive

WM

and

cortical

at-

roph

yan

d

seve

rely

atroph

ied

putamina

(noCT)

17.627

(0.84);

1.15

8

(0.90);

3.57

8

(1.23)

VV

VAGS/BS

N

AGS1

315

P1(brother

to

P2,so

nof

P3)

MNorm

alNo

2.5y

STwith

norm

al

intelle

ct

6y

Fluc

tua-

tion

s

ST;intelle

c-

tually

norm

al;

Norm

alMRI

(at2years)

andCT(at4

years)

10.506

(5.53)

IVII

IST

P2(brother

to

P1,so

nof

P3)

MDelay

edNo

DD

obviou

s

by1y

STan

d

spee

ch

delay

4y

Yes,ag

e2.5

yep

isod

eof

definite

regression

STwithse-

vere

ID

MRIn

or-

mal,B

Gan

d

PVcalcifica-

tion

onCT

17.147

(3.06)

IVIV

IVST

P3(Fathe

rto

P1an

dP2

;

mos

aic)

MAlw

ays

norm

al

NR

Alw

ays

norm

al

Alw

ays

norm

al

31y

No

Norm

alNoim

aging

2.69

2

(30.18

)

II

INorm

al

AGS1

456

P1M

Norm

alOtitis

med

ia

15mo

Lethargy

,

dyston

ia,

globa

l

regression

17y

Yes,

with

interm

it-

tent

flares

ofen

ceph

a-

lopa

thyan

d

slow

lypro-

gressive

dystonia

SDTwith

severe

ID;

DSH

Mild

hyper-

intensityof

theBG

(no

CT)

9.06

3

(16.68

)

VV

VSD

T

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al.178

Dow

nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 14: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

Table

2(Con

tinue

d)

AGSnum

-

ber

Individu

alSe

xDev

elop-

men

tal

status

prior

toon

set

Possible

trigge

r

Ageat

in-

itial

asce

rtain-

men

t

Featuresat

presen

ta-

tion

Curren

tag

e/

ageat

death

(cau

sewere

know

n)

Prog

res-

sive

course

Statusat

last

con-

tact

Neu

roim

a-

ging

Interferon

scores

(age

,de

ci-

malized

years)

GMFC

SMACS

CFC

SSu

mmary

AGS1

507

P1M

Mod

erate

delay

No

13mo

Develop-

men

tala

r-

rest

with

onsetof

gene

ralized

dyston

ia

9y

Yes,

epi-

sode

of

definite

re-

gressionat

age4years

SDTwith

someID;

DSH

BSN

8.29

3

(8.56)

VV

VBS

N

AGS1

537

P1F

Delayed

No

15mo

Motor

delay

withspastic

tetrap

are-

sis

11y

No

SDTwith

someID;

AIHA

BGca

lcifi-

cation

(CT);

norm

alMRI

atag

e10

years

12.865

(10.33

)

VIV

IIISD

T

AGS1

542

P1M

Norm

alNo

21mo

Rapidly

prog

ressive

SP

7y

Yes,

with

prog

ressive

invo

lve-

men

tof

UL

andspastic

dyston

ia

SDTwith

someID

Norm

al(no

CT)

12.24

(6.38);

18.051

(6.43)

IVIII

IVSP

beco

m-

ingSD

T

P2M

Like

ly

delaye

d

No

14mo

Onset

of

dyston

ia

andloss

of

skills

19mo

No

SDTwith

seve

reID

Noim

aging

7.03

1

(2.17)

VV

VClin

ically

AGS-lik

e

(but

no

imag

ing)

AGS1

824

P1M

Norm

alUnspe

cified

viral

infection

11mo

Acu

tere-

gression

withdy

sto-

niane

cessi-

tating

ICU

admission

5y

No

SDTwith

seve

reID;

CB

BSN

with

BGca

lcifi-

cation

8.71

3

(5.55)

VV

VBS

N

AGS1

980

P1M

Norm

alFebrile

illne

ss

14mo

Left

hemi-

paresiswith

loss

ofam

-

bulation

2y

Yes,

from

uni-to

bi-

lateral;

howev

er,

someskills

(e.g.,craw

l-

ing,

pulling

tostan

d)

subs

e-

quen

tly

reac

quired

SDTwith

someID

BSN(noCT)

NT

IVIV

IIIBS

N (Con

tinue

d)

Neuropediatrics Vol. 48 No. 3/2017

Neurological Disease due to ADAR1 Dysfunction Rice et al. 17

Dow

nloa

ded

by: J

ohns

Hop

kins

Uni

vers

ity. C

opyr

ight

ed m

ater

ial.

Page 15: Genetic, Phenotypic, and Interferon Biomarker Status in ... · Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease Gillian I. Rice1 Naoki Kitabayashi2,3

Table

2(Con

tinue

d)

AGSnu

m-

ber

Individu

alSe

xDev

elop

-

men

tal

status

prior

toons

et

Possible

trigger

Age

atin-

itial

asce

rtain-

men

t

Featuresat

presen

ta-

tion

Curren

tag

e/

ageat

death

(cau

sewere

known)

Prog

res-

sive

course

Status

at

last

con-

tact

Neu

roim

a-

ging

Interferon

scores

(age

,de

ci-

malized

years)

GMFC

SMACS

CFC

SSu

mmary

AGS1

989

P1M

Norm

alOtitis

med

ia

12mo

Trem

oran

d

rapidloss

of

skills

4y

No

SDTwith

severe

ID

BSN

with

BGcalcifi-

cation

NT

VV

VBS

N

AGS2

007

P1M

Possible

mild

delay

Febrile

re-

spiratory

illness

15mo

Dev

elop

-

men

talre-

gression

withloss

of

craw

ling

andothe

r

skills

3y

No

SDTwith

severe

ID

Charac

ter-

isticof

AGS

NT

VV

VAGS

AGS2

009

P1F

Norm

alMMRan

d

varice

lla

vaccination

13mo

Dev

elop

-

men

talre-

gression

withloss

of

skills

6y

No

SDTwith

severe

ID

BSN

with

BGcalcifi-

cation

NT

IVIV

IVBS

N

AGS2

010

P1F

Norm

alVaccina

tion

6mo

Lost

alla

c-

quired

skills

over

6mo

period

9y

No

SDTwith

severe

ID

Somewhite

matterdis-

ease

and

calcifica-

tion

ofGP

NT

VV

VAGS

Abb

reviations

:AGS,

Aicardi–G

outières

synd

rome;AIHA,autoimmun

ehe

molytican

emia;B

G,b

asalga

nglia

;BSN

,bila

teralstriatalnec

rosis;CB,

chilb

lains;CFC

S,Com

mun

icationFu

nction

Classification

System

;CSF,

cerebrospina

lfluid;C

T,co

mputed

tomograp

hy;D

D,d

evelop

men

tald

elay

;DSH

,dysch

romatos

issymmetrica

hereditaria;D

&V,d

iarrhe

aan

dvo

miting;G

MFC

S,Gross

Motor

Func

tionClassification

System

;GP,

glob

uspa

llidu

s;HSM

,hep

atosplen

omeg

aly;

ICC,intracran

ialcalcification

;ICU,inten

sive

care

unit;ID,intellectua

ldisab

ility;IFN

,interferon;

IUGR,intrauterinegrow

thretardation;

LL,low

erlim

b;M

ACS,

Man

ual

AbilityClassification

System

;MRI,mag

neticresona

nceim

aging;N

R,no

treleva

nt;N

T,no

ttested

;PV,p

eriven

tricular;S

D,spa

sticdy

ston

ia;S

DT,

spasticdy

ston

ictetrap

aresis;S

P,spasticpa

rapa

resis;

ST,spa

stic

tetrap

aresis;UL,

uppe

rlim

b;URT

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grouping (AGS1–7: TREX1, RNASEH2A, RNASEH2B, RNASEH2C,SAMHD1, ADAR1, and IFIH1), and apparently isolated spasticparaparesis has been reported in patientsmutated in three ofthese genes (RNASEH2B, ADAR1, and IFIH1). In contrast, in anoverviewof 374 patients from299 familieswithmutations inAGS1–7, BSN, the most frequently ascertained phenotype inthe current series, was only recorded in the context ofADAR1-related disease, suggesting discrete factors relevantto gene/protein expression and disease mechanism conse-quent upon ADAR1 dysfunction.19 Also possibly reflective ofthis apparent specificity, in comparison to other genotypes,is the frequency of clinical progression, and the low risk ofdeveloping glaucoma and chilblain-like lesions (since werecorded no examples of the former and only two cases ofthe latter in our cohort).

The consistent finding of a positive interferon signature inperipheral blood in the series of patients reported hereindicates the potential utility of this biomarker as a screeningtest for ADAR1-related disease, for the interpretation ofADAR1 genetic sequence variants of uncertain significance,and in the possible monitoring of treatment efficacy as anti-interferon therapies is developed.20,21 We emphasize that

the interferon signature remains elevated many years afterdisease onset, providing evidence of ongoing pathology.ADAR1 is expressed throughout the brain including the basalganglia (http://www.brain-map.org), and it has been shownthat a loss of ADAR1 renders cells more susceptible toapoptosis following stress, including infection.22 We cannotrule out the possibility that the occurrence of fevers prior tofrank neurological regression represents a prodrome in somecases. However, a history of vaccination or an apparentlydiscrete infectious episode in several patients considered tobe completely developmentally normal prior to diseaseonset, of whom 12 demonstrated BSN on neuroimaging,raises the possibility that the acute degeneration of striataltissue seen in many patients with ADAR1 mutations mightrelate to a rapid induction of apoptosis triggered by viralinfection/metabolic stress. Beyond this possibility, there isstrong evidence that interferon is a neurotoxin,23–27 and weconsider it likely that inappropriate and chronic exposure totype I interferons may be directly relevant to the ADAR1-related neurological phenotypes described here, perhapsinduced by dsRNA species which are normally edited byADAR1, thereby rendering them as immunology inert/

Fig. 2 Characteristic neuroradiological features of ADAR1-related disease. Images (A) and (D) are axial T2 images of AGS251, presenting at9 months of age with bilateral striatal necrosis following varicella zoster infection, showing characteristic high signal and swelling of head ofcaudate and putamen (A). (D) Follow-up at 35 months shows persisting signal change and shrinkage of caudate and putamen. Images (B) and (E)are from AGS150, a 10-year-old child presenting with an Aicardi–Goutières syndrome phenotype. (B) T2 axial MR shows cerebral atrophy withmildly increased signal in white matter. (E) CT shows dense bilateral globus pallidus calcification. Image (C) is of a patient presenting with anAicardi–Goutières syndrome phenotype (AGS810_P1). (C) T2 axial MR at 5 years shows marked cerebral atrophy, white matter high signal, andsignal change and shrinkage of the putamen. (F) CT scan of his mother (AGS810_P2) aged 34 years shows dense calcification of globus pallidus,head of caudate, and deep frontal white matter. Her MR (not shown) was normal. CT, computed tomography; MR, magnetic resonance.

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A B

Fig. 3 Age at presentation and associated disability. (A) Age at presentation in patients developing disease after a period of clearly normaldevelopment. (B) Assessment of gross motor function, manual ability, and communication status in living patients with mutations in ADAR1 over1 year of age.

A B

Fig. 4 Interferon score data in ADAR1-mutated patients and controls. Summary of interferon score data (A) in ADAR1-mutated patients andcontrols and (B) in ADAR1-mutated patients by age. Circles indicate results above þ2 SD of the mean of 29 controls (¼ 2.466, considered“positive”). Solid horizontal lines indicate median value of ADAR1-mutated and control groups. Dotted line indicates positive/negative boundary(2.466) of interferon score.

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marking them as self.1,3,4,28 These observations highlight thepotential utility of treatments for ADAR1-related disease,which recent data suggest might be usefully targeted atantagonism of type I interferon signaling.29

Authors’ ContributionsJ.H.L. and Y.J.C. collated and reviewed all clinical andradiological data. G.I.R. performed quantitative PCR analy-sis, with assistance fromN.K.,M.B., T.A.B., A.C.E.B.,M.L.C., A.M.C., C.C.,R.C.D., F.R.D.,N.D., B.DeA.,V.DeG., C.G.E.L.DeG., I.D., C De L., A.E., M.C.F., P.F., A.F., E.F.,M.P.G., N.R.G., M.H.,M.A.K., N.L., J.-P.S.-M.L.,M.A.L., S.S.M., R.M., L.M.-S., G.M.,M.M., V.N., S.O., J.D.O.-E., B.P.-D., F.P., K.M.R.,M.R., F.R., P.R.-P., A.R., T.I.S., M.B.T., A.T., F.U., N.U., A.V., and A.W. provided clinicalsamples and critically reviewed clinical and immunologicalpatient data. Y.J.C. conceived the study andwrote the initialdraft with the assistance of G.I.R. All authors criticallyreviewed the article and agreed to its publication.

Financial DisclosureNone of the authors have any financial disclosure to report.

FundingY.J.C. acknowledges funding from the European ResearchCouncil (GA 309449: Fellowship to Y.J.C.), ERA-NET Neuron(MR/M501803/1), and a state subsidy managed by theNational Research Agency (France) under the “Investmentsfor the Future” (ANR-10-IAHU-01). T.A.B. acknowledgesfunding from the NIHR. V.N. and K.M.R. acknowledge theclinical support of the C4RCD Research Group.

AcknowledgmentsWe are grateful to the affected families for their involve-ment in our research, and to all clinicianswho contributedsamples and clinical data not included here. We thankMarie-Louise Frémond for critical reading of the article.We would like to thank the Exome Aggregation Consor-tium (ExAC), the Genome Aggregation Database (gno-mAD), and the groups that provided exome variant datafor comparison.

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