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Fundamentals of Biochemistry
Fourth Edition
Chapter 4Amino Acids
Copyright © 2013 by John Wiley & Sons, Inc. All rights reserved.
Donald Voet • Judith G. Voet • Charlotte W. Pratt
Chapter 4Amino Acid Structure
Key Concepts 4.1• The 20 standard amino acids share a common structure but differ in their side chains.• Peptide bonds link amino acid residues in a polypeptide.• Some amino acid side chains contain ionizable groups whose pK values may vary.
General Structure of α-Amino Acid
Structures of Standard Amino Acids
Structures of Standard Amino Acids
Structures of Standard Amino Acids
Structures of Standard Amino Acids
Dipolar Amino Acid: Zwitterion
Condensation of Two Amino Acids
Nonpolar Side Chains
Uncharged Polar Side Chains
Cysteine Can Form Disulfide Bonds
Charged Polar Side Chains
AlanyltyrosylaspartylglycineAla-Tyr-Asp-Gly
AYDG
Amino Acid Nomenclature
Chapter 4Amino Acid Structure
Checkpoint 4.1 • Draw a generic amino acid and identify the carbon and its substituents.• Draw the structures of the 20 standard amino acids and give their one- and three-letter abbreviations.• Draw a Cys–Gly–Asn tripeptide. Identify the peptide bond and the N- and C-termini, and determine the peptide’s net charge at neutral pH.• Classify the 20 standard amino acids by polarity, structure, type of functional group, and acid–base properties.• Why do the pK values of ionizable groups differ between free amino acids and amino acid residues in polypeptides?
Chapter 4Stereochemistry
Key Concepts 4.2 • Amino acids and many other biological compounds are chiral molecules whose configurations can be depicted by Fischer projections.• The amino acids in proteins all have the L stereochemical configuration.
Modified Amino Acids in Proteins
Biologically Active Amino Acid Derivatives
Dimerization of Glutathione