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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
Informatics Informatics Methods in Methods in
Biomedicine: Biomedicine:
Foundations of a Foundations of a ProfessionProfession
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
Molecul
es Cells Tissues
Organs Patient Populatio
n
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
ClinicalClinical
Basic SciencesBasic SciencesPreclinicalPreclinical
Post-docPost-doc
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
Prerequisites Prerequisites
Introductory computer science Introductory computer science
• Programming language Programming language
• Data structures Data structures
• AlgorithmsAlgorithms
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic HealthFormal Competencies Formal Competencies
• Systems -Systems - Systems architecture, system Systems architecture, system integration, software engineeringintegration, software engineering
• Knowledge -Knowledge - Data mining, knowledge Data mining, knowledge bases, rule bases, information retrieval bases, rule bases, information retrieval
• Data -Data - Ontology, databases, signal Ontology, databases, signal processing, image processing, sequence processing, image processing, sequence analysisanalysis
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
Prerequisites Prerequisites
• Statistics Statistics • Elementary experimental methods Elementary experimental methods
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic HealthEmpirical Competencies Empirical Competencies
• Systems –Systems – User interfaces, project User interfaces, project management, needs assessment, impact management, needs assessment, impact assessment assessment
• Knowledge –Knowledge – Knowledge acquisition, Knowledge acquisition, decision analysis, computer-aided decision analysis, computer-aided instruction instruction
• Data –Data – Data modeling, visualization, data Data modeling, visualization, data standards, utilization modeling, security, standards, utilization modeling, security, confidentiality confidentiality
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
PrerequisitesPrerequisites
Biomedical sciences Biomedical sciences
• Molecular biologyMolecular biology
• Anatomy Anatomy
• Physiology Physiology
• Public health Public health
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic HealthBioinformatics Bioinformatics Application DomainApplication Domain
• Intro to GenomicsIntro to Genomics
• Computation GenomicsComputation Genomics
• Sequence AnalysisSequence Analysis
• Microarrays and Regulatory NetworksMicroarrays and Regulatory Networks
• Biological DatabaseBiological Database
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic HealthImaging Application Imaging Application DomainDomain
• Biomedical ImagingBiomedical Imaging
• Analysis and Quantification of Medical Analysis and Quantification of Medical ImagesImages
• Wavelet ApplicationsWavelet Applications
• Computation Neural Modeling and Computation Neural Modeling and NeuroengineeringNeuroengineering
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic HealthClinical Application Clinical Application DomainDomain
• Economics of InformaticsEconomics of Informatics
• Project ManagementProject Management
• Interactive Health CommunicationsInteractive Health Communications
• Introduction to Databases and Data MiningIntroduction to Databases and Data Mining
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ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
Public Health Public Health Application DomainApplication Domain
• Use of Large Scale national health care data Use of Large Scale national health care data setssets
• Hospital Organization and ManagementHospital Organization and Management
• Health CommunicationsHealth Communications
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
Basic ResearchBasic ResearchInformatics Informatics ChallengesChallenges ApplicationsApplications
BioinformatiBioinformaticscs
Biochips, algorithms for DNA sequencing, patient specific drugs
Linking genomic and patient data, security, ethics
Genetic-based patient records and protocols
ImagingImaging
3-D modeling, visualization, data representation
Ontology-based ref models of classification of concepts and visual info
3-D anatomy atlases, radiological diagnosis
ClinicalClinical Coding, data structures, high performance computing
Vocabularies, automated retrieval from repositories
Distributed medical records, clinical trials, teledentistry
Public Public HealthHealth
Databases, searching, data analysis theories and algorithms
Integration and validation of info, knowledge discovery
Data mining, citizen-based services
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Mathematical and technicalMathematical and technicalmethods and theories methods and theories
Cognitive, behavioral, and organizational Cognitive, behavioral, and organizational techniques and theories techniques and theories
ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
Lessons Learned in Lessons Learned in Training Training
• Acculturation Acculturation
• Depth or Breadth Depth or Breadth
• DDS/PhD DDS/PhD
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ImagingImagingBioInformaticsBioInformatics ClinicalClinical Public HealthPublic Health
Thanks to Thanks to
Dr. Stephen B. JohnsonDr. Stephen B. Johnson
Dr. Ted ShortliffeDr. Ted Shortliffe