20
Fig infecting viruses

Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

  • Upload
    others

  • View
    0

  • Download
    0

Embed Size (px)

Citation preview

Page 1: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

Fig infecting viruses

Page 2: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

State of Arte Ficus Carica is a flowering plant in Mulberry family (Moraceae) .

It is widely distributed worldwide, especially the Middle East countries where it has a traditional and economical importance

Diseases induced by intracellular infectious agents (viruses, viroids, phytoplasmas) represent a major threat to fruit trees and resulting in 30 -40% yields loss.

Figs (Ficus carica) are an old and most common fruit grown in all the Mediterranean countries, recently were indicated that the fig were infected with viral and virus –like diseases, Fig mosaic virus was one of them.

Page 3: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

List of viruses infecting Fig trees and the year of their identification Fig leaf mottle-associated virus 1 (FLMaV-1) [2006] Closterovirus

Fig leaf mottle-associated virus 2 (FLMaV-2) [2007] Ampelovirus

Fig mosaic virus (FMV) [2009] Emaravirus

Fig latent virus 1 (FLV-1) [2009] Trichovirus

Arkansas fig closterovirus-1 (AFCV-1 ) [2010] Closterovirus

Arkansas fig closterovirus-2 (AFCV-2 ) [2010] Closterovirus

Fig mild mottle-associated virus (FMMaV) [2010] Closterovirus

Fig badnavirus-1 (FBV-1) [2010] Badnavirus

Fig cryptic virus ((FCV) [2011] Alphacrpticvirus

Fig fleck-associated virus (FFkaV) [2011] Maculavirus

Apple dimple fruit viroid (ADFVd) [2014] Apscaviroid

Page 4: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within

(Closterovirus ; Closteroviridae).

FLMaV-2 is falls under Closteroviridae family, but it is under Ampelovirus genus .

The virion of both genus is non-enveloped, flexuous and exceptionally long, filamentous particles.

The virion body is assembled by the major capsid protein (CP) and the tail by the minor capsid protein (CPm).

The genome is mono-partite linear ssRNA(+), has no poly(A) tract and the 5’ terminus probably has a methylated nucleotide cap.

Page 5: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 6: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

Badnavirus FBV-1 is an example of the Badnavirus, Caulimoviridae

Badnavirus virion is not enveloped, bacilliform particles, monopartite, open circular, double stranded DNA genome with discontinuities in both strands: one in the transcribed strand and one to three in the non-transcribed strand.

Page 7: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

Alphacrpticvirus Finally, FCV is under

Alphacrpticvirus; Partitiviridae.

The two genomic segments linear dsRNAgenome are encapsulated separately.

Page 8: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

What are the ongoing Research objectives Nowadays???? The main objectives of this project was to assess the

genetic and biological diversity of viruses infecting Figs worldwide

In Palestine , recently this topic is getting our interests

Page 9: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

Field survey and biological study

Page 10: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 11: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 12: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 13: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 14: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 15: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 16: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 17: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is
Page 18: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

UBA –Lab testingTNA – cDNA - PCR

Page 19: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

RT-PCR resultsThe FMV incidence were found in

most of the figs collected from Palestinian fields

Preliminary results

Virus tested

Fig Samples FMV FBV FLMaV-1 FLMaV-2 FLV-1 FCV ADFVd

1 +

2 + +

3 +

4 + + +

5 + +

6 + +

7 + +

8 + +

9 + + + +

10 + +

11 + +

12 + + +

13 + +

14 + +

15 +

Page 20: Fig infecting viruses - An-Najah Videos Fig Viruses.pdf · Closterovirus FLMaV-1, FMMaV, AFCV-1, AFCV-2 are viruses classified within (Closterovirus ; Closteroviridae). FLMaV-2 is

Other research work Sequencing the variants

14 of positive PCR samples were sent for sequencing portion of the FMV to be then compared with the available sequences in the gene bank

Expanding the study to include all known fig viruses

Monitoring the expressed symptoms with the molecular results to correlate the variants with the symptoms on the tree

Survey for these viruses in Palestinian fig trees to assess the sanitary status of the fig viruses in Palestine