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The Microbiology Letters Issue 2 | October 2015 Field of Microbiology Students @ Cornell University News Highlights October Events Farewell wishes to Michelle L. Cole On October 2, we celebrated Michelle’s last day with Micro and wished her the best on her new position outside of Cornell. Call for posters! Don’t forget to attend and present a poster at the 2 nd Annual Cornell Microbiology Symposium. Presentations and Awards Olga Lastovetsky– 2015-2016 Procter & Gamble oral presentation prize winner Powered by FOMS: Francine Arroyo - fa257 | Daniel RojasTapias - dfr47 | Azul Pinochet Barros - vap48 www.micro.cornell.edu/academics/graduate Oct 2-3 rd Helmann Lab 25 th anniversary reunion Oct 12 th Microbiology Symposium More pics & updates on Facebook Field of Microbiology Students Coffee Hour @ Wing Hall On September 25, we had our first coffee hour of the semester. It gave everyone a chance to catch up and enjoy some tasty bagels. Team AquaticVirus with Dr. Ian Hewson For more information on SSWD research and amphipod circoviruses, visit Dr. Hewson’s active blogs at: http://seastarwastingdisease.wordpress.com ; http://www.teamaquaticvirus.com Team Aquatic Virus have been investigating two exciting areas of viral ecology: Sea star wasting disease (SSWD) and circoviruses of amphipods. SSWD is a disease attributed to the sudden and massive die off of millions of sea stars along the Northern American coast line (from Baja California, Mexico to Southern Alaska). Combining Koch’s postulates and viral metagenomics, the Hewson team have identified a candidate pathogen for SSWD, the sea star-associated densovirus (SSaDV). They received NSF funding for a 3-year study to further investigate the epidemiology of SSWD. Led by graduate student Elliot Jackson, they plan to determine how SSaDV causes disease using comparative transcriptomic analysis of host responses from healthy and diseased sea stars. Additionally, the group plans to explore how the virus is transmitted, examine the relationship between genetic variability and heterogeneity of SSWD symptoms, and inquire as to whether the molecular evolution of SSaDV had an effect on the current epidemic. Circoviruses, specifically circular Rep-encoding ssDNA (CRESS-DNA), have recently been found in high occurrence in marine and freshwater arthropods. Microbiology graduate student Kalia Bistolas explains, “Circoviruses were originally thought to only infect plants and vertebrates, but it turns out that they might be more ubiquitous than we thought!” Little is known how these viruses affect their hosts or their host’s role in food webs. Kalia leads the group in exploring the ecological and biogeochemical impacts of amphipod circoviruses. Her work focuses on the freshwater taxon Diporeia sp in the laurentian Great Lakes and the kelp amphipod Peramphithoe femorata on the US west coast. Latest Publications Peters Lab Shi et al. 2015 – Conformational toggling controls target site choice for the heteromeric transposase element Tn7 ( Nucl Acids Res) Helmann Lab Pandey et al. 2015 – MntR(Rv2788) a transcriptional regulator that controls manganese homeostasis in Mycobacterium tuberculosis ( Mol Microbiol ) Dr. John Helmann – Edited the volume on “Archaeal and Bacterial Transcription” in the METHODS series (Elsevier) Madsen Lab Dr. Eugene Madsen – Released the second edition of his textbook Environmental Microbiology: From Genomes to Biogeochemistry” (Wiley) 1 2 3 Oct 30th Halloween contest & coffee hour Oct 2-3 rd

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Page 1: Field of Microbiology Students @ Cornell University The ... › sites › micro.cornell.edu › files › shared › im… · Field of Microbiology Students @ Cornell University News

The Microbiology LettersIssue 2 | October 2015

Field of Microbiology Students @ Cornell University

NewsHighlights

OctoberEvents

FarewellwishestoMichelleL.ColeOnOctober2,wecelebratedMichelle’slastdaywithMicroandwishedherthebestonhernewpositionoutsideofCornell.

Callforposters!Don’tforgettoattendandpresentaposteratthe2ndAnnualCornellMicrobiologySymposium.

Presentations and Awards OlgaLastovetsky–2015-2016Procter&Gambleoralpresentationprizewinner

Powered by FOMS: FrancineArroyo-fa257|DanielRojasTapias-dfr47|AzulPinochetBarros-vap48 www.micro.cornell.edu/academics/graduate

October31stHalloweencontest

Oct2-3rdHelmannLab25th

anniversaryreunion

Oct12thMicrobiologySymposium

More pics & updates on Facebook

Field of Microbiology Students

CoffeeHour@WingHallOnSeptember25,wehadourfirstcoffeehourofthesemester.Itgaveeveryoneachancetocatchupandenjoysometastybagels.

TeamAquaticViruswithDr.IanHewson

FormoreinformationonSSWDresearchandamphipodcircoviruses,visitDr.Hewson’sactiveblogsat:http://seastarwastingdisease.wordpress.com;http://www.teamaquaticvirus.com

TeamAquaticVirushavebeeninvestigatingtwoexcitingareasofviralecology:Seastarwastingdisease(SSWD)andcircovirusesofamphipods.

SSWDisadiseaseattributedtothesuddenandmassivedieoffofmillionsofseastarsalongtheNorthernAmericancoastline(fromBajaCalifornia,MexicotoSouthernAlaska).CombiningKoch’spostulatesandviralmetagenomics,theHewsonteamhaveidentifiedacandidatepathogenforSSWD,theseastar-associateddensovirus(SSaDV).

TheyreceivedNSFfundingfora3-yearstudytofurtherinvestigatetheepidemiologyofSSWD.LedbygraduatestudentElliotJackson,theyplantodeterminehowSSaDVcausesdiseaseusingcomparativetranscriptomicanalysisofhostresponsesfromhealthyanddiseasedseastars.Additionally,thegroupplanstoexplorehowthevirusistransmitted,examinetherelationshipbetweengeneticvariabilityandheterogeneityofSSWDsymptoms,andinquireastowhetherthemolecularevolutionofSSaDVhadaneffectonthecurrentepidemic.

Circoviruses,specificallycircularRep-encodingssDNA(CRESS-DNA),haverecentlybeenfoundinhighoccurrenceinmarineandfreshwaterarthropods.MicrobiologygraduatestudentKaliaBistolasexplains,“Circoviruseswereoriginallythoughttoonlyinfectplantsandvertebrates,butitturnsoutthattheymightbemoreubiquitousthanwethought!”Littleisknownhowthesevirusesaffecttheirhostsortheirhost’sroleinfoodwebs.Kalialeadsthegroupinexploringtheecologicalandbiogeochemicalimpactsofamphipodcircoviruses.HerworkfocusesonthefreshwatertaxonDiporeiaspinthelaurentianGreatLakesandthekelpamphipodPeramphithoefemorataontheUSwestcoast.

Latest Publications PetersLab Shietal.2015–ConformationaltogglingcontrolstargetsitechoicefortheheteromerictransposaseelementTn7(NuclAcidsRes) HelmannLab Pandeyetal.2015–MntR(Rv2788)atranscriptionalregulatorthatcontrolsmanganesehomeostasisinMycobacteriumtuberculosis(MolMicrobiol) Dr.JohnHelmann–Editedthevolumeon“ArchaealandBacterialTranscription”intheMETHODSseries(Elsevier) MadsenLab Dr.EugeneMadsen–Releasedthesecondeditionofhistextbook“EnvironmentalMicrobiology:FromGenomestoBiogeochemistry”(Wiley)

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The Microbiology LettersIssue 2 | October 2015

Field of Microbiology Students @ Cornell University

NewsHighlights

OctoberEvents

FarewellwishestoMichelleL.ColeOnOctober2,wecelebratedMichelle’slastdaywithMicroandwishedherthebestonhernewpositionoutsideofCornell.

Callforposters!Don’tforgettoattendandpresentaposteratthe2ndAnnualCornellMicrobiologySymposium.

Presentations and Awards OlgaLastovetsky–2015-2016Procter&Gambleoralpresentationprizewinner

Powered by FOMS: FrancineArroyo-fa257|DanielRojasTapias-dfr47|AzulPinochetBarros-vap48 www.micro.cornell.edu/academics/graduate

October31stHalloweencontest

Oct2-3rdHelmannLab25th

anniversaryreunion

Oct12thMicrobiologySymposium

More pics & updates on Facebook

Field of Microbiology Students

CoffeeHour@WingHallOnSeptember25,wehadourfirstcoffeehourofthesemester.Itgaveeveryoneachancetocatchupandenjoysometastybagels.

TeamAquaticViruswithDr.IanHewson

FormoreinformationonSSWDresearchandamphipodcircoviruses,visitDr.Hewson’sactiveblogsat:http://seastarwastingdisease.wordpress.com;http://www.teamaquaticvirus.com

TeamAquaticVirushavebeeninvestigatingtwoexcitingareasofviralecology:Seastarwastingdisease(SSWD)andcircovirusesofamphipods.

SSWDisadiseaseattributedtothesuddenandmassivedieoffofmillionsofseastarsalongtheNorthernAmericancoastline(fromBajaCalifornia,MexicotoSouthernAlaska).CombiningKoch’spostulatesandviralmetagenomics,theHewsonteamhaveidentifiedacandidatepathogenforSSWD,theseastar-associateddensovirus(SSaDV).

TheyreceivedNSFfundingfora3-yearstudytofurtherinvestigatetheepidemiologyofSSWD.LedbygraduatestudentElliotJackson,theyplantodeterminehowSSaDVcausesdiseaseusingcomparativetranscriptomicanalysisofhostresponsesfromhealthyanddiseasedseastars.Additionally,thegroupplanstoexplorehowthevirusistransmitted,examinetherelationshipbetweengeneticvariabilityandheterogeneityofSSWDsymptoms,andinquireastowhetherthemolecularevolutionofSSaDVhadaneffectonthecurrentepidemic.

Circoviruses,specificallycircularRep-encodingssDNA(CRESS-DNA),haverecentlybeenfoundinhighoccurrenceinmarineandfreshwaterarthropods.MicrobiologygraduatestudentKaliaBistolasexplains,“Circoviruseswereoriginallythoughttoonlyinfectplantsandvertebrates,butitturnsoutthattheymightbemoreubiquitousthanwethought!”Littleisknownhowthesevirusesaffecttheirhostsortheirhost’sroleinfoodwebs.Kalialeadsthegroupinexploringtheecologicalandbiogeochemicalimpactsofamphipodcircoviruses.HerworkfocusesonthefreshwatertaxonDiporeiaspinthelaurentianGreatLakesandthekelpamphipodPeramphithoefemorataontheUSwestcoast.

Latest Publications PetersLab Shietal.2015–ConformationaltogglingcontrolstargetsitechoicefortheheteromerictransposaseelementTn7(NuclAcidsRes) HelmannLab Pandeyetal.2015–MntR(Rv2788)atranscriptionalregulatorthatcontrolsmanganesehomeostasisinMycobacteriumtuberculosis(MolMicrobiol) Dr.JohnHelmann–Editedthevolumeon“ArchaealandBacterialTranscription”intheMETHODSseries(Elsevier) MadsenLab Dr.EugeneMadsen–Releasedthesecondeditionofhistextbook“EnvironmentalMicrobiology:FromGenomestoBiogeochemistry”(Wiley)

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Oct  30th  Halloween  contest  &  coffee  hour  

The Microbiology LettersIssue 2 | October 2015

Field of Microbiology Students @ Cornell University

NewsHighlights

OctoberEvents

FarewellwishestoMichelleL.ColeOnOctober2,wecelebratedMichelle’slastdaywithMicroandwishedherthebestonhernewpositionoutsideofCornell.

Callforposters!Don’tforgettoattendandpresentaposteratthe2ndAnnualCornellMicrobiologySymposium.

Presentations and Awards OlgaLastovetsky–2015-2016Procter&Gambleoralpresentationprizewinner

Powered by FOMS: FrancineArroyo-fa257|DanielRojasTapias-dfr47|AzulPinochetBarros-vap48 www.micro.cornell.edu/academics/graduate

October31stHalloweencontest

Oct2-3rdHelmannLab25th

anniversaryreunion

Oct12thMicrobiologySymposium

More pics & updates on Facebook

Field of Microbiology Students

CoffeeHour@WingHallOnSeptember25,wehadourfirstcoffeehourofthesemester.Itgaveeveryoneachancetocatchupandenjoysometastybagels.

TeamAquaticViruswithDr.IanHewson

FormoreinformationonSSWDresearchandamphipodcircoviruses,visitDr.Hewson’sactiveblogsat:http://seastarwastingdisease.wordpress.com;http://www.teamaquaticvirus.com

TeamAquaticVirushavebeeninvestigatingtwoexcitingareasofviralecology:Seastarwastingdisease(SSWD)andcircovirusesofamphipods.

SSWDisadiseaseattributedtothesuddenandmassivedieoffofmillionsofseastarsalongtheNorthernAmericancoastline(fromBajaCalifornia,MexicotoSouthernAlaska).CombiningKoch’spostulatesandviralmetagenomics,theHewsonteamhaveidentifiedacandidatepathogenforSSWD,theseastar-associateddensovirus(SSaDV).

TheyreceivedNSFfundingfora3-yearstudytofurtherinvestigatetheepidemiologyofSSWD.LedbygraduatestudentElliotJackson,theyplantodeterminehowSSaDVcausesdiseaseusingcomparativetranscriptomicanalysisofhostresponsesfromhealthyanddiseasedseastars.Additionally,thegroupplanstoexplorehowthevirusistransmitted,examinetherelationshipbetweengeneticvariabilityandheterogeneityofSSWDsymptoms,andinquireastowhetherthemolecularevolutionofSSaDVhadaneffectonthecurrentepidemic.

Circoviruses,specificallycircularRep-encodingssDNA(CRESS-DNA),haverecentlybeenfoundinhighoccurrenceinmarineandfreshwaterarthropods.MicrobiologygraduatestudentKaliaBistolasexplains,“Circoviruseswereoriginallythoughttoonlyinfectplantsandvertebrates,butitturnsoutthattheymightbemoreubiquitousthanwethought!”Littleisknownhowthesevirusesaffecttheirhostsortheirhost’sroleinfoodwebs.Kalialeadsthegroupinexploringtheecologicalandbiogeochemicalimpactsofamphipodcircoviruses.HerworkfocusesonthefreshwatertaxonDiporeiaspinthelaurentianGreatLakesandthekelpamphipodPeramphithoefemorataontheUSwestcoast.

Latest Publications PetersLab Shietal.2015–ConformationaltogglingcontrolstargetsitechoicefortheheteromerictransposaseelementTn7(NuclAcidsRes) HelmannLab Pandeyetal.2015–MntR(Rv2788)atranscriptionalregulatorthatcontrolsmanganesehomeostasisinMycobacteriumtuberculosis(MolMicrobiol) Dr.JohnHelmann–Editedthevolumeon“ArchaealandBacterialTranscription”intheMETHODSseries(Elsevier) MadsenLab Dr.EugeneMadsen–Releasedthesecondeditionofhistextbook“EnvironmentalMicrobiology:FromGenomestoBiogeochemistry”(Wiley)

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