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Enterobacteriaceae

Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

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Page 1: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Enterobacteriaceae

Page 2: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

EnterobacteriaceaeI – Habitat

digestive tube(colon) of human and animals150 Species

Facultative anaerobesDiarrheal illnesses3 million death/year4billion infectoions/ worldwide

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Page 4: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

EnterobacteriaceaeII – Pathogenicity

1 – Pthogenic species

Yersinia pestis

Yersinia pseudotuberculosis

Yersinia enterocolitica

Salmonella

Shigella

EHEC

Page 5: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

EnterobacteriaceaeII – Pathogenicity

2 – Opportunistic pathogens

normal flora of intestine

E. coli infectious in urinary tract

KES

(Klebsiella – Enterobacter – Serratia)

Proteus – Providencia -Citrobacter

Page 6: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

EnterobacteriaceaeIII – Morphology

Gram negative bacilli

1-3µ length

Page 7: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Enterobacteriaceae

• Key common properties

Ferment glucose

Reduce nitrates to nitrites

Oxidase negative

Catalase positiveOften motile (Except Shigella & Klebsiella)

Page 8: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Enterobacteriaceae

• Coliforms: Rapid Lactose Fermentating enteric bacteria that are normal and opprtunistic (some strains of E.coli are true pathogens)

• Escherichia Coli • Klebsiella• Enterobacter• Hafnia• Serratia• Citrobacter

Page 9: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Enterobacteriaceae

• Non Coliforms: Lactose Negative may or may not be normal flora:• Opportunistic, normal gut flora • Proteus • Morganella• Providencia• Edwardsiella• Pathgenic enterics:• Salmonella typhi , S.cholarae – suis, S.enteritidis, Arizona hinshawii• Shigella dysenteria , Sh. flexneri , Sh. boydii, Sh. Sonnei• Yersinia enterocolitica• Yersinia pseudotuberculosis• Pathogenic non enteric:• Yersinia pestis

Page 10: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

EnterobacteriaceaeV – Antigenic structure

Somatic O antigen

Flagellar H antigen

K antigen or Vi (capsule)

Page 11: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

EnterobacteriaceaeIV – Culture

media « ordinary »(selenite broth, MaCconky agar, SS

agar, EMB, Hecktoen enteric agar,TSI agar)

facultative aero-anaerobe

types of colonies

S « Smooth »

R « Rough »

M «Mucoid »

Page 12: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Coliform organisms and Diseases

Page 13: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliI – Habitat

80 % of aerobic flora of intestineoutnumbered 9 to 1 by the strictly anearobicbacteria of the gut( Bacteroides and Bifidobacterium)

more fecal contaminationcolititre (water)

Page 14: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliII – Morphology

Gram negative bacilli

often motile

Page 15: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 16: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliIV – Antigenic structure

O157H7 « disease of hamburger »

O111H4 (EPEC)

Page 17: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
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Escherichia coliV I – Pathogenesis:

1 – Urinary Infections

pregnant women +++

females > males

Page 19: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Hormones : dilation of urinary

Page 20: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 21: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 22: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Urinary infections

?0+Particularcases

?+0Particularcases

?

+(monomicrobial)

+(polymicrobial)

+Infection

00Normal

Bacteria

> = 105/ml

Polynuclaires

> = 104/ml

Page 23: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Urinary infections

• Causes 50-80% UTI

• Simple urinary infection– More frequent

– Young females

– healthy

– No clear symptoms

Page 24: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Urinary infections

• Complex urinary infections

– Males

– Pregnant womens, elderly

– Immunocompromised (diabetes, AIDS, transplantations)

– Urithritis, nephritis

– Urinary catheterization ,

Page 25: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Urinary infections

• Treatment of simple UTI

– Monotherapy

– Course (single or < 3 days)

– Quinolones II, cotrimoxazole

• Treatment of complex UTI

– Combination therpay > 5 days

– Aminoglycosides + quinolone II

Page 26: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliV I – Pathogenesis

2 – Septicemia

via urinary tract(+++)

frequent

Page 27: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliV I – Pathogenesis

3 – neonatal

Meningitis

antigen K1

wound infections

pneumonia

Page 28: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliV I – Pathogenesis

4 – Intestinal infections

4-2 EIEC

(« Enteroinvasive E. coli »)(Shigella-like)

Page 29: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 30: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Groupe 2 ٣٠

Page 31: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 32: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliV II – Epidémiologie

Page 33: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliV III – Diagnostic biologique

Page 34: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliIII – cultural characteristic

Page 35: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliIX – Prophylaxie

hygiène

Page 36: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 37: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

Escherichia coliX – Treatment

UTI

Septicémies – Méningites :

flouroquinolones+/- aminoglycosides

diarrhea : réhydration +/- antibiotics

Page 38: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

ANTIBIOTHERAPIE DES DIARRHEES DE CAUSEBACTERIENNE

GERME CAUSAL ANTIBIOTIQUE DURÉ E ALTERNATIVE

SalmonellaShigella

Fluoroquinoloneou cotrimoxazole

5 jours Aminopénicilline

Campylabacter jejuni Macrolide 14 jours Fluoroquinolone*

Yersinia enterocolitica Cycline* oufluoroquinolone*

10 jours Cotrimoxazole

Escherichia coli Cotrimoxazoleou fluoroquinolone*ou cycline*ou aminopénicilline

5 jours

Clostricium difficile Vancomycine (peros)ou métronidazole

10 jours

Vibrio cholerae Cycline* 3 jours Cotrimoxazoleou fluoroquinolone*

* Contre-indiqué chez l’enfant

Page 39: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

KLEBSIELLA

Page 40: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 41: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

K.Pneumoniae On BA

Page 42: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 43: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

• Producing capsule

• K.Pneumoniae RT and intestine of 5%healthy persons

• Pneumonia 2%

• UTI and bacteremia

• K.oxytoca and K.pneumonia(Nosocomial)

Page 44: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

K.Pneumoniae on BA and MAC

Page 45: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 46: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

• K.ozaenae

Chronic rhinitis

K.rhinoscleroma:

Nose and pharynx granuloma

Sclerosis of nasal, pharyngeal, laryngeal and tracheal mucosa

Page 47: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

ENTEROBACTER & HAFNIA

Page 48: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 49: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

• Resident of soil, stool and milk products

• E.aerogenes:

• UTI

Page 50: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

CITROBACTER

Page 51: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 52: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

• Resident of soil, water, stool

• C.freundii

• UTI and bacteremia

Page 53: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
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Serratia

Page 55: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*
Page 56: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*

• S.marcescens:

• Nosocomial opportunist

• Pneumonia

• Bacteremia

• Endocarditis

Page 57: Enterobacteriaceaemicrobiology.free.fr/Presentations/enterobacteriaceae.pdf · Enterobacteriaceae • Non Coliforms: ... Escherichia coli Cotrimoxazole ou fluoroquinolone* ou cycline*