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Efficient stable cell pool/cell line development for large-scale antibody and protein production Hangxing Yu Oct 22, 2015 GenScript

Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

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Page 1: Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

Efficient stable cell pool/cell line development for large-scale antibody

and protein production

Hangxing YuOct 22, 2015

GenScript

Page 2: Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

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Overview

Stable Cell Line Introduction

GenScript CHO-Glutamine Synthetase

Capability & Case Study

Summary

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Stable Cell Line Introduction

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Stable Cell Line Generation

Expression

Vector

Plasmid Construction

SelectionTransfection

Clone Expansion

MTX/MSX

Fed-batch cultureCell line generation & Process development

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Chinese hamster ovary (CHO) cells Easily adapt to production medium

Grow to high cell density

Yield stable glycosylation of antibodies

DUXB11, DG44: lack of dihydrofolate reductase (DHFR) activity

CHOK1: with endogenous DHFR activity

NS0 murine myeloma cells: Non-Ig secreting and cholesterol auxotroph

Lack of endogenous glutamine synthetase enzyme activity

5

Cell Line

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Origin of Replication:SV 40 origin, f1 origin, pBR322 origin

Promoter/Enhancer:1) Cytomegalovirus (CMV) promoter2) Elongation factor alpha (EF1) promoter

Intron Sequence in 5’ untranslated region: Increase export of transcribed mRNA to the cytoplasm from the nucleus.

3’ polyadenylation signal sequence: Maximize mRNA levels

Kozak Sequence GCC GCC (A/G)CC:Enhance the translation initiation

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Expression Vector

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Selectable Marker Selective Reagents

Metabolic Selectable Marker

Dihydrofolate reductase (DHFR) Methotrexate (MTX)

Glutamine Synthetase Methionine Sulphoximine (MSX)

Antibiotic Selectable Marker

Puromycin acetyltransferase Puromycin

Aminoglycoside phosphotransferase Neomycin (G418)

Hygromycin phospotransferase Hygromycin

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Selection Marker

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Random Integration of foreign genes

Disruption of the genome by gene amplification systems

Cell clones are highly heterogeneous!

Active region supporting high gene expression in the chromosome is rare.

High producing clones are rare!

Screening Method:

Serial limiting dilution

Multiple rounds of serial subcloning

Single cell cloning

ELISA for antibody titering measurement

8

Clone Screening

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Medium Development:

Component titration determine the “dose response” to various media components

Media blending a mixture of different media

Spent medium analysis medium changes during the culture process.

Automated screening focus on throughput

9

Feeding Strategy

Page 10: Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

GenScript CHO-Glutamine Synthetase

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Principle of Glutamine SynthetaseExpression

Many mammalian cells require exogenous glutamine for survival.

Expression vector encoding GOI + Glutamine Synthetase gene allows glutamine synthesis.

CHO cells express sufficient Glutamine Synthetase to survive without exogenous glutamine.

CHO cell endogenous Glutamine Synthetase inhibited by MSX necessitating engineered Glutamine Synthetase activity.

ATP

ADP + Pi

Glutamine Synthetase Enzyme

NH4+ + Glutamate

Glutamine

Methionine Sulfoximine

(MSX) is an inhibitor

which binds Glutamine

Synthetase irreversibly

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Objective

CHO K1 Suspension Cells

CHO- Glutamine Synthetase Vector

Cell Line Development

Media & Feed Optimization

GenScript CHO-Glutamine Synthetase

High producing

cell line

To develop a mammalian expression platform that would lead to rapid, efficient and high quality biologics production

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GenScript CHO-Glutamine Synthetase

De novo synthesized expression vector

Developed in-house CHO-K1 clone as expression host

Validated system and developed case studies

Launched CHO-Glutamine Synthetase in April 2015 for

guaranteed gram level expression of rAbs in 4

months

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Vector

Genes encoding Ab codon optimized.

Glutamine Synthetase and Ab gene on same plasmid.

Strong promoter (CMV) drives Ab gene expression.

Relatively weak promoter drives Glutamine Synthetase gene expression.

Favorable integration results in robust gene expression.

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Cell Line

CHO K1 SP

ATCC clone

Several rounds of

optimization

Adapted to suspension &

chemically defined media

Selected for superior

growth and expression

Fully characterized

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Host Cell Line

CHOK1SP: Derived from ATCC clone, optimized suspension in serum free media

CHO-Glutamine Synthetasetechnology facilitates rapid creation of high productivity cell lines coupled with robust growth characteristics

Several rounds of optimization conducted and 100s of clones screened

Ease of selection using glutamine-free medium

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CHO-Glutamine Synthetase Cell Line Development

Codon optimization &Gene synthesis

Transfection

High-titer Pool selection

Cloning or limiting dilution

Repeat

Preliminary clone evaluation

& expansion

Clone evaluation & expansion

Cell banking

Further evaluationProcess

development

Stability study

cGMPMCB

cGMP manufacturing

Fed-batch culture

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Capability & Case Study

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Advantages

Productivity

Stability

Speed

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0

1

2

3

4

5

6

Pool Single cellclone

Batchculture

Fed-batchround 1

Fed-batchround 2

Tite

r (g

/L)

mAb Expression level

mAb Expression level

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Productivity

Use of CHO-Glutamine Synthetase results in high-producing cell lines.

GenScript has created cell lines producing >5g/L of recombinant antibody with production rates in the range 50-100 pg/cell/day.

High volumetric

productivity

Cost

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Development stage crucial to success

GenScript CHO-Glutamine Synthetase Technology - for rapid selection of high-producing cell lines

Quick generation of cell lines suitable for cGMP

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Speed

Gram level mAb productivity achieved in 14-17 weeks.

Milestone Weeks

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17

Pool

Single Cell Clone

Batch Culture

Fed-Batch Culture

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Workflow and Timeline: DHFR vs Glutamine Synthetase

Gene synthesis and plasmids preparation

Transfection and High-titer pool

selection

Single clone selection

Fed-Batch culture

Stability evaluation

Research cell bank preparation

Week 2

Week 4

Week 8

Week 13

Week 17

Week 20

Week 21

Week 2

Week 4

Week 8

Week 20

Week 25

Week 29

Week 32

Week 33

Gene synthesis and plasmids preparation

Transfection and single cell clones

screening

MTX amplification

(gradient increase)

Subcloning for single subclones selection

Fed-Batch culture

Stability evaluation

Research cell bank preparation

DHFR Glutamine Synthetase

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Stability

Glutamine Synthetase cell lines that are consistent in terms of product concentration, growth and product characteristics can be easily created.

0

5

10

15

20

25

30

35

40

45

50

55

60

65

2 4 6 8 10 12 14 16 18 20 22 24 26 28 30 32 34 36 38 40

Tite

r(m

g/L)

& V

iab

le c

ell

den

sity

(x1

0^5

cells

/ml)

Generation

Titer

VCD

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0

20

40

60

80

100

120

140

160

0-50 50-100 100-150 150-200 200-300

# o

f si

ngl

e ce

ll cl

on

es

Titer (mg/L)

Single Cell Clones

24

Case Study: Single Cell Clone Screening

Selected for batch culture

mAb X: Productivity of single cell clones in 96-well plates.

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Case Study: Batch Culture Evaluation

0

10

20

30

40

50

60

70

80

300-500 500-600 600-800 800-1,000

# o

f si

ngl

e ce

ll cl

on

es

Titer (mg/L)

Single Cell Clones

Selected for fed-batch culture, round 1

mAb X: Productivity of single cell clones in batch culture mode in shake flask.

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Case Study: Fed-Batch Culture Evaluation, Round 1

0

10

20

30

40

50

60

70

80

90

0.5-1 1-2 2-3

# o

f si

ngl

e ce

ll cl

on

es

Titer (g/L)

Single Cell Clones

mAb X: Productivity of single cell clones in Fed-Batch culture mode in shake flask, round 1.

25 clones selected for fed-batch culture, round 2

• 25 clones at 2-3g/L were selected for round 2 fed batch culture• Productivity increased to 5-6 g/L after fed-batch culture optimization in round 2

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Case Study: Fed-Batch Culture Evaluation, Round 2

0

5

10

15

20

25

30

5-6

# o

f si

ngl

e ce

ll cl

on

es

Titer (g/L)

Single Cell Clones

mAb X: Productivity of single cell clones in Fed-Batch culture mode, round 2.

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Case Study: Fed-Batch culture evaluation growth profile

A typical single clone expressing mAb-X grown in Fed-Batch mode in shake flask after two rounds of process optimization.

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Protein/Ab Characterization & QC

Attributes Technique

Molecular Weight SDS-PAGE, MS

Purity, Homogeneity HPLC, SEC

ConcentrationProtein assay, UV

spectrophotometer

Identity Western Blotting, MS

Aggregation, Homogeneity SEC

PTM MS

Activity & Function Biochemical Assay

Safety Endotoxin Testing

Page 29: Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

Summary

Page 30: Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

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Summary

• Glutamine Synthetase based selection system

• High productivities without amplification

• Speed – no need for rounds of gene amplification

• Scalable

Glutamine Synthetase

• CHO derived host cell line for expression

• Adapted to suspension and AFCDM

• Selected for superior growth and expressionCHO-K1

• Fully optimized process

• Production concentrations of >5g/L achieved

• High probability of monoclonality

Cell Line Development

Page 31: Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

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About GenScript

32

GenScript

Products & ServicesMake Research Easy

Gene

Peptide

Protein

Antibody

Discovery Biology

Cell Line

Page 32: Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

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Thank you for your participation

We wish you all success in your research

[email protected]

[email protected]

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For details on upcoming and archived webinars, visit http://www.genscript.com/webinars.html

Examining the components of your peptide sample with AccuPep QC – Yu Lu, Ph.D., Senior Scientist, GenScript. October 29, 2015

Optimizing soluble protein expression: codon optimization, RBS design, and expression vector design – Rachel Speer, Ph.D., Marketing Specialist, GenScript. November 11, 2015

Large scale genome editing for metabolic engineering of E. coli – Yifan Li, Ph.D., Senior Scientist, GenScript. November 5, 2015

Antibody drug development: challenges & solutions – Liusong Yin, Ph.D., Senior Scientist, GenScript. November 18, 2015

Page 33: Efficient stable cell pool/cell line development for large ... stablecell line... · Make Research Easy CONFIDENTIAL 4 Stable Cell Line Generation Expression Vector Plasmid Construction

Thank you!