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Towards Figs. 6B, C
Saprobe Lichenized
Plant associate Animal pathogen
Mycoparasite Insect commensal
Equivocal
100
95
4533
100100
76
100
100
100
95
100
100
71100
93
58
100100
2597
95
100
95
72
81
100
100
10052
100
84
64100
93
100100
100100
3348
64
100100
10054
100100
100
89
100
100
10098
7490
100
50100
81
100100
93
10013
8994
10020
79
9855
100
9465
94
++
++++++
+++++
++
++++++
+++++
++
++++
Lich
eniz
ed
Dev
elop
men
t
Deh
isce
nce
Asc
oma
Mar
ine
Ase
xual
onl
y
Pez
izal
esO
rbili
a-le
sG
eogl
ossa
les
Sacc
haro
myc
etal
es
Schi
-zo
sacc
haro
myc
etal
es
Pneu
-m
ocys
tidal
es
Taph
ri-na
les
Out
grou
psN
eo-
lect
ales
Sacc
haro
myc
etes
Taph
rino-
myc
otin
aPe
zizo
myc
etes
Orb
ilio-
myc
etes Geoglossum nigritum
Trichoglossum hirsutum Sarcoleotia globosa
Orbilia auricolor Arthrobotrys elegans
Orbilia vinosa Sarcoscypha coccinea 1
Sarcoscypha coccinea 2 Pseudopithyella minuscula
Galiella rufa Sarcosoma latahense
Aleuria aurantia Cheilymenia stercorea
Anthracobia macrocystis Scutellinia scutellata
Lasiobolidium spirale Pyronema domesticum Ascodesmis sphaerospora Eleutherascus lectardii
Gyromitra californica Gyromitra esculenta
Morchella elata cf. Morchella esculenta cf.
Disciotis venosa Verpa bohemica
Verpa conica Helvella compressa cf. Barssia oregonensis
Tuber gibbosum Caloscypha fulgens
Rhizina undulata Ascobolus crenulatus
Ascobolus carbonarius Saccobolus dilutellus
Plicaria leiocarpa Pachyella babingtonii
Sarcosphaera crassa Peziza vesiculosa
Marcelleina persoonii Candida glabrata
Saccharomyces cerevisiae Saccharomyces castellii
Kluyveromyces lactis Eremothecium gossypii
Lachancea waltii Candida albicans Candida tropicalis
Candida guilliermondii Debaryomyces hansenii
Candida lusitaniae Clavispora lusitaniae
Metschnikowia bicuspidata Zygoascus steatolyticus
Yarrowia lipolytica Lipomyces oligophaga
Taphrina deformans Taphrina wiesneri
Protomyces inouyei Saitoella complicata
Schizosaccharomyces pombe Pneumocystis carinii
Neolecta vitellina Neolecta irregularis
Strobilomyces floccopus Calostoma cinnabarinum
Hygrocybe conica Armillaria mellea
Grifola frondosa Fomitopsis pinicola
Phanerochaete chrysosporium Cotylidia sp.
Coltricia perennis Calocera cornea
Cryptococcus neoformans Ustilago maydis
Agaricostilbum hyphaenes Rhizopus oryzae
Lege
nd fo
r Fig
ures
4 A
-E
Supplemental Figure 6A
Lichenized
Nonporicidal Poricidal Exposed hymenium Marine
AsexualEnclosed hymenium
OstiolarFissitunicateRostrate
Ascohymenial
Development
Ecology
Ascus dehiscence Ascomatal shape Other
DeliquescentAscolocular Operculate
0.1 substitutions per site
0.1 substitutions per site
43
86
100
100
100100
100100
86
39
10097
21
7
36100
74
100
12100
100
28
84
83
72
5570
100
78
100
98
6393
97
99
99
95
40
59
9681
60
73
76
100
38
10098
100
84
35
62
100
38
96100
9693
100
83
19
9557
8599
3814
100
41
8080
10087
10046
99
100
9756
59
34
10093
98
100
35
100
9992
10064
87
100
100
10086
97
100100
++
Lich
eniz
ed
Dev
elop
men
t
Deh
isce
nce
Asc
oma
Mar
ine
Ase
xual
onl
y
Ja-
hnul
alesPl
eosp
oral
es
Pa-
tella
riale
s
Cap
nodi
ales
Arth
onia
les
Sym
bio-
taph
rinal
esD
othi
deal
es
Myr
ian-
gial
esTr
yp-
ethe
liale
s
Bot
ryos
phae
riale
s
Supplemental Figure 6B
Dot
hide
omyc
etes
Arth
o-ni
omyc
etes
Cochliobolus sativus Cochliobolus heterostrophus Pleospora herbarum Dendryphiella arenaria Pleospora herbarum Alternaria alternata Allewia eureka Pyrenophora phaeocomes Pyrenophora tritici-repentis
Coniothyrium obiones Phaeosphaeria avenaria Phaeosphaeria eustoma Phaeosphaeria nodorum Ophiosphaerella herpotricha Pleosporales sp.
Cucurbitaria elongata Leptosphaeria maculans
Coniothyrium palmarum Pyrenochaeta nobilis
Phoma herbarum Ascochyta pisi
Wettsteinina lacustris Massaria platani
Phaeodothis winteri Bimuria novae-zelandiae
Montagnula opulenta Byssothecium circinans
Herpotrichia juniperi Trematosphaeria pertusa
Herpotrichia diffusa Pleomassaria siparia
Arthopyrenia salicis Sporormiella minima
Westerdykella cylindrica Preussia terricola Lophiostoma crenatum
Lophiostoma arundinis Trematosphaeria heterospora
Lepidosphaeria nicotiae Ulospora bilgramii
Verruculina enalia Delitschia winteri Rhytidhysteron rufulum
Lophium mytilinum Aliquandostipite khaoyaiensis
Botryosphaeria ribis Botryosphaeria viticola
Botryosphaeria tsugae Botryosphaeria stevensii
Macrophomina phaseolina Botryosphaeria dothidea
Guignardia gaultheriae Guignardia bidwellii
Trypethelium sp. Trypethelium eluteriae
Hysteropatella sp. Hysteropatella elliptica
Hysteropatella clavispora Kirschsteiniothelia aethiops 1 Kirschsteiniothelia aethiops 2
Tyrannosorus pinicola Venturia inaequalis
Phaeotrichum benjaminii ‘Mycosphaerella pneumatophorae’
Tubeufia paludosa Helicomyces roseus
Tubeufia cerea Dothidea hippophaës Stylodothis puccinioides
Dothidea sambuci Dothidea insculpta
Dothiora cannabinae Sydowia polyspora Delphinella strobiligena Columnosphaeria fagi 1 Columnosphaeria fagi 2
Elsinoë phaseoli Elsinoë centrolobi Elsinoë veneta
Myriangium duriaei Capnodium salicinum Scorias spongiosa
Capnodium coffeae Cercospora beticola
Mycosphaerella fijiensis Mycosphaerella punctiformis Mycosphaerella graminicola
Cladosporium cladosporioides Davidiella tassiana
Trimmatostroma abietis Roccella fuciformis Schismatomma decolorans
Roccellographa cretacea Opegrapha varia
Opegrapha dolomitica Simonyella variegata
Arthonia caesia Symbiotaphrina buchneri
Hyphozyma lignicola Symbiotaphrina kochii
43
Pelti
gera
les
Pertu
sar-
iale
sA
caro
-sp
oral
esC
haet
othy
riale
sEu
rotia
les
Myc
o-ca
licia
les
Cor
-yn
elia
les
Ver
ruca
r-ia
les
Pyre
nula
les
Can
de-
laria
res
Ost
ropa
les s
.l.U
mbi
li-ca
riale
sB
aeo-
myc
etal
es
Leca
nor
ales
Leca
nora
les
Telo
schi
stal
es
Lich
inal
es
Ony
-ge
nale
s
Supplemental Figure 6C
Tow
ards
Fig
. 6A
54
38
100100
30
21
22
81
99
91
93
100
100
100
27
33
100100
6474
10033
100
100
99
91
89
62
99
6625
6364
90
99
100
5190
10053
95
100100
86
100100
96
10093
100
97
52
85
91
93
48100
58
100
10081
64
9825
100
8679
100
100
90
96
99100
97
99
85
58
8793
90100
98
38
71
99
77
38
60100
9048
100
78
10088
54
61
99100
100100
83
98
100
86
++
+
++++
+
+++
++
+
+
++++
+
+++
++
+ Peltula umbilicata Peltula auriculata
Lichinella iodopulchra Usnea antarctica
Usnea sphacelata Flavocetraria nivalis Hypogymnia physodes
Flavoparmelia caperata Canoparmelia caroliniana Cladonia caroliniana
Mycoblastus sanguinarius Lecanora hybocarpa
Crocynia pyxinoides Lopezaria versicolor
Bacidia schweinitzii Ramalina complanata
Physcia aipolia Heterodermia vulgaris
Anaptychia palmulata Pyxine subcinerea
Buellia frigida Teloschistes exilis
Megalospora tuberculosa Letrouitia domingensis
Lobaria scrobiculata Pseudocyphellaria anomala
Lobariella pallida Peltigera degenii
Nephroma parile Collema cristatum
Coccocarpia erythroxyli Lecidea fuscoatra
Rhizocarpon oederi Rhizocarpon superficiale
Phyllobaeis erythrella Phyllobaeis imbricata
Hymenelia lacustris Stictis urceolatum
Stictis radiata Glomerobolus gelineus
Acarosporina microspora Phlyctis argena
Gyalecta jenensis Diploschistes cinereocaesius
Diploschistes ocellatus Trapelia glebosa
Towards Fig. 6D
Pertusaria hemisphaerica Pertusaria dactylina
Icmadophila ericetorum Dibaeis baeomyces
Loxospora ochrophaea Loxospora cismonica
Boreoplaca ultrafrigida Hypocenomyce scalaris
Lasallia pustulata Lasallia papulosa
Umbilicaria mammulata Pleopsidium gobiense Pleopsidium chlorophanum
Acarospora schleicheri Acarospora laqueata
Dactylospora imperfecta Phialophora verrucosa
Dactylospora lobariella Capronia pilosella Ramichloridium anceps
Exophiala dermatitidis Capronia munkii Exophiala pisciphila
Exophiala salmonis Cyphellophora laciniata
‘Glyphium elatum’ Sarcinomyces petricola
Ceramothyrium carniolicum Staurothele frustulenta Agonimia sp. Endocarpon pallidulum Dermatocarpon miniatum
Pyrenula aspistea Pyrgillus javanicus
Granulopyrenis seawardii Pyrenula pseudobufonia
Monascus purpureus Hamigera avellanea
Eupenicillium limosum Eupenicillium javanicum Penicillium freii
Aspergillus protuberus Emericella nidulans
Aspergillus fumigatus Athroderma ciferrii
Coccidioides immitis Spiromastix warcupii
Ajellomyces capsulatum Caliciopsis orientalis Caliciopsis pinea
Dactylospora haliotrepha 1 Dactylospora haliotrepha 2
Dactylospora mangrovei Mycocalicium polyporeaum
Sphinctrina turbinata Candelariella terrigena
Candelariella reflexaTowards Fig. 5 B
Lich
eniz
ed
Dev
elop
men
t
Deh
isce
nce
Asc
oma
Mar
ine
Ase
xual
onl
y
0.1 substitutions per site
Lich
ino-
myc
etes
Leca
noro
myc
etes
Euro
tiom
ycet
es
Towards Fig. 6E
Tow
ards
Fig
. 5 C
+
++
+
++
86
57
82
41
100
86
10013
100
100
24
91
60
19
12
20
10082
4159
100
5679
100
1615
6691
99100
90100
100
9983
10041
100
86
+
++
+
++
++
++
+
++
+
Rhy
tis-
mat
ales Hel
o-tia
les1H
elo-
tiale
s2 Thel
e-bo
lale
sEr
y-si
phal
es Cy-
ttaria
les
Hel
o-tia
les4
Hel
otia
les5
Hel
o-tia
les3
Hel
o-tia
les6
Hel
o-tia
les7
Hel
o-tia
les8
Leot
iom
ycet
es Chlorociboria aeruginosa
Cyttaria darwinii Blumeria graminis
Erysiphe glycines Loramyces macrosporus
Mollisia cinerea Vibrissea truncorum
Connersia rilstonii Leotiomycetes sp.
Cudoniella clavus cf. Lachnum virgineum
Ascocoryne sarcoides Chloroscypha enterochroma
Neobulgaria pura Bisporella citrina
Dark septate endophyte Botryotinia fuckeliana Sclerotinia sclerotiorum
Monilinia laxa Rutstroemia firma
Lambertella subrenispora Meria laricis
Pezicula carpinea Dermea acerina Neofabraea malicorticis
Potebniamyces pyri Bulgaria inquinans Phacidium lacerum
Leuconeurospora pulcherrima Pseudeurotium zonatum
Thelebolus caninus Thelebolus microsporus
Microglossum rufum Leotia lubrica
Cyclaneusma minus Naemacyclus fimbriatus
Coccomyces strobi Tryblidiopsis pinastri
Lich
eniz
ed
Dev
elop
men
t
Deh
isce
nce
Asc
oma
Mar
ine
Ase
xual
onl
y
Supplemental Figure 6D
0.1 substitutions per site
Hyp
ocre
ales
Mic
roas
cale
s L
ulw
orth
- ia
les
Dia
porth
ales
Cal
- o
spha
eria
les
Oph
io-
stom
atal
es
Sord
aria
les
Bol
-in
iale
s
Xyl
aria
les
Cha
e-to
spha
eria
les
Pyx
- i
diop
hora
les
Lab
- o
ulbe
nial
es
Con
-io
chae
tale
s
Mel
a- n
ospo
rale
s C
or-
ono
phor
ales
Tow
ards
Fig
. 6D
86
100
49
37
100
54
100
94
100
10095
100
100
100
10085
72
10098
59
100100
100
97
100
54
100
57
99100
9981
100
92
54
15
12
14
60100
97
8671
14
97
82100
58
3955
66
37
10075
10082
100
10096
9391
94
84
100
16
84
2097
10092
35100
68
34
100
100
957986
92
10095
10096
9653
92
10097
10097
76
98
70
89
78100
100
9825
6892
100
100
6274
43100
100
4575
59
10098
100 +
++
+
+++
+++++
++++++
+
+
++
++++++
+++
++
++
+
+++
+++++
++++++
+
+
++
++++++
+++
+
Hypocrea lutea Hypocrea americana
Sphaerostilbella berkeleyana Cordyceps cardinalis
Epichloë typhina Claviceps purpurea
Balansia henningsiana Stachybotrys chartarum
Stachybotrys subsimplex Peethambara spirostriata
Myrothecium roridum Cordyceps ophioglossoides Cordyceps capitata
Nectria haematococca Gibberella zeae
Pseudonectria rousseliana Ophionectria trichospora
Nectria cinnabarina Niesslia exilis
Hydropisphaera erubescens Acremonium murorum
Roumegueriella rufula Acremonium persicinum Bionectria aureofulva cf. Bionectria ochroleuca
Acremonium alternatum Emericellopsis maritima
Acremonium breve Acremonium strictum
Melanospora zamiae Melanospora tiffanyae
Bertia moriformis Chaetosphaerella phaeostroma
Etheirophora unijubata Torpedospora radiata
Halosphaeria appendiculata Nimbospora effusa
Lignincola laevis Aniptodera chesapeakensis
Sigmoidea marina Corollospora angusta
Corollospora maritima Varicosporina ramulosa
Microascus longirostris Microascus trigonosporus
Doratomyces stemonitis Petriella setifera Graphium sp.
Graphium penicillioides Ceratocystis fimbriata
Ambrosiella xylebori Gondwanamyces capensis
Verticillium dahliae Glomerella cingulata
Lindra thalassiae Lulworthia grandispora
Lindra obtusa Lulworthia uniseptata
Lulworthia lignoarenaria Cryptodiaporthe aesculi Apiognomonia errabunda
Plagiostoma euphorbiae Gnomonia gnomon
Cryptosporella hypodermia Melanconis stilbostoma
Melanconis marginalis Cryphonectria parasitica
Cryphonectria nitschkei Chrysoporthe cubensis Endothia gyrosa
Amphilogia gyrosa Diaporthe phaseolorum
Diaporthe eres Mazzantia napelli
Valsella salicis Leucostoma niveum
Valsa ambiens Calosphaeria pulchella
Pleurostoma ootheca Togninia minima
Ophiostoma stenoceras 1 Ophiostoma stenoceras 2 Ophiostoma piliferum
Annulusmagnus triseptatus Thyridium vestitum
Phomatospora bellaminuta Lanspora coronata
Papulosa amerospora Magnaporthe grisea
Gaeumannomyces medullaris Gelasinospora tetrasperma Neurospora crassa
Sordaria fimicola Podospora anserina
Bombardia bombarda Lasiosphaeria ovina
Chaetosphaeria tortuosa Chaetosphaeria ovoidea
Camarops ustulinoides Camarops microspora
Coniochaeta ostreum Acremonium atrogriseum
Xylaria acuta Xylaria hypoxylon
Graphostroma platystoma Seynesia erumpens Diatrype disciformis Eutypa lata Apiospora montagnei
Khuskia oryzae Amphisphaeria umbrina
Anthostomella torosa Pyxidiophora sp.
Pyxidiophora avernensis Stigmatomyces protrudens
Hesperomyces virescens
Lich
eniz
ed
Dev
elop
men
t
Deh
isce
nce
Asc
oma
Mar
ine
Ase
xual
onl
y
Supplemental Figure 6E
0.1 substitutions per site
Sord
ario
myc
etes
Labo
ul-
beni
omyc
etes
Arthrobotrys elegans Orbilia auricolor
Orbilia vinosa Cheilymenia stercorea Aleuria aurantia Anthracobia macrocystis
Scutellinia scutellata Pyronema domesticum
Lasiobolidium spirale Ascodesmis sphaerospora Eleutherascus lectardii
Sarcoscypha coccinea 1 Sarcoscypha coccinea 2Pseudopithyella minuscula
Galiella rufa Sarcosoma latahense
Verpa conica Verpa bohemica Disciotis venosa
Morchella esculenta cf. Morchella elata cf.
Gyromitra esculenta Gyromitra californica
Helvella compressa cf. Barssia oregonensis
Tuber gibbosum Rhizina undulata
Caloscypha fulgens Plicaria leiocarpa
Pachyella babingtonii Sarcosphaera coronaria Peziza vesiculosa
Marcelleina persoonii Ascobolus crenulatus
Ascobolus carbonarius Saccobolus dilutellus P
eziz
ales
Orb
ilia-
les 100
100
97
81100
10052
49
100100
100
98
99
100100
99100
6775
95100
70
98
100100
9882
61
74
100
8766
10098
98
100
Debaryomyces hansenii Candida guilliermondii
Candida tropicalis Candida albicans
Clavispora lusitaniae Candida lusitaniae
Metschnikowia bicuspidata Saccharomyces castellii Saccharomyces cerevisiae Candida glabrata
Lachancea waltii Eremothecium gossypii
Kluyveromyces lactis Yarrowia lipolytica
Zygoascus steatolyticus Lipomyces oligophaga
Taphrina deformans Taphrina wiesneri
Protomyces inouyei Saitoella complicata
Pneumocystis carinii Schizosaccharomyces pombe
Neolecta irregularis Neolecta vitellina
Phanerochaete chrysosporium Fomitopsis pinicola
Grifola frondosa Strobilomyces floccopus
Calostoma cinnabarinum Hygrocybe conica
Armillaria mellea Coltricia perennis
Cotylidia sp. Calocera cornea
Cryptococcus neoformans Agaricostilbum hyphaenes
Ustilago maydis Rhizopus oryzae
Bas
idio
myc
ota
Sacc
haro
myc
etes
Taph
rino-
myc
otin
aO
utgr
oups
Sacc
haro
myc
etal
esN
eo-
lect
ales
Schi
-zo
sacc
haro
myc
etal
esPn
eum
ocys
tidal
es
Taph
-rin
ales
Pezi
zom
ycet
esO
rbili
o-m
ycet
es Towards Figs. 7B-E
Supplemental Figure 7A
77
93
100
99
98
100
98
100
37
100100
87
100
3373
34100
100
9948
6794
100
61
9770
7269
100
100 100
46
66
83
54
100
0.1 substitutions per site
Pleospora herbarum 2 Dendryphiella arenaria Cochliobolus sativus Cochliobolus heterostrophus Alternaria alternata Allewia eureka
Pyrenophora phaeocomes Pyrenophora tritici-repentis
Coniothyrium obiones Cucurbitaria elongata
Coniothyrium palmarum Pyrenochaeta nobilis
Phaeosphaeria avenaria Phaeosphaeria eustoma Phaeosphaeria nodorum
Pleosporalean sp. Ophiosphaerella herpotricha Leptosphaeria maculans
Phoma herbarum Ascochyta pisi
Phaeodothis winteri Bimuria novae-zelandiae
Montagnula opulenta Wettsteinina lacustris Massaria platani
Byssothecium circinans Herpotrichia juniperi
Trematosphaeria pertusa Herpotrichia diffusa
Pleomassaria siparia Arthopyrenia salicis
Westerdykella cylindrica Sporormiella minima Preussia terricola Lophiostoma arundinis Lophiostoma crenatum
Trematosphaeria heterospora Verruculina enalia
Ulospora bilgramii Lepidosphaeria nicotiae Delitschia winteri
Rhytidhysteron rufulum Lophium mytilinum
Botryosphaeria ribis Botryosphaeria viticola Botryosphaeria tsugae
Botryosphaeria stevensii Botryosphaeria dothidea
Macrophomina phaseolina Guignardia bidwellii Guignardia gaultheriae Trypethelium eluteriae
Trypethelium sp. Aliquandostipite khaoyaiensis
Tubeufia paludosa Helicomyces roseus
Tubeufia cerea Hysteropatella elliptica cf.
Hysterium pulicare cf. Hysteropatella clavispora cf.
Kirschsteiniothelia aethiops 1 Kirschsteiniothelia aethiops 2
Mycosphaerella pneumatophorae Dothidea insculpta Dothidea hippophaës Dothidea sambuci Stylodothis puccinioides
Dothiora cannabinae Delphinella strobiligena Sydowia polyspora Columnosphaeria fagi 1 Columnosphaeria fagi 2
Elsinoë phaseoli Elsinoë centrolobi Elsinoë veneta
Myriangium duriaei Mycosphaerella punctiformis
Mycosphaerella graminicola Cercospora beticola
Mycosphaerella fijiensis Trimmatostroma abietis Capnodium salicinum
Scorias spongiosa Capnodium coffeae
Davidiella tassiana Cladosporium cladosporioides
Tyrannosorus pinicola Venturia inaequalis
Phaeotrichum benjaminii Roccella fuciformis
Schismatomma decolorans Rocellographa cretacea
Opegrapha varia Opegrapha dolomitica
Simonyella variegata Arthonia caesia
Pleospora herbarum 1
Arth
onio
myc
etes
Dot
hide
omyc
etes
Arth
onia
les
Sym
bio-
taph
rinal
esCa
pnod
iale
sM
yria
ngia
les
Ja-
hnul
ales
Tryp
-et
helia
les
Botry
osph
aeria
les
Pleo
spor
ales
Pa-
tella
riale
s
Dot
hide
ales
Symbiotaphrina buchneri Hyphozyma lignicola
Symbiotaphrina kochii
Towards Fig. 7A,C
99
100
100
100100
100
100
100
81
71
100100
6
21100
10076
6
40
18
67
97
6969
323860
100
100
9296
90
97
10086
66
2386
93
10086
9
17
90
100
100
88
47
57
100
98
64
79
10039
100100
9698
10098
99100
98
10099
99
99
84
83100
99
98
9880
100
86
100
10084
1004429
100
100
10096
98
33
26
68
100
10099
100
61
18
17
17
Supplemental Figure 7B
0.1 substitutions per site
Leca
nora
les
Telo
shis
tale
s
Pelti
gera
les
Pertu
-sa
riale
sA
caro
spor
ales
Cha
etot
hyria
les
Euro
tiale
sO
ny-
gena
les
Myc
o-ca
licia
les
Lich
inal
es
Cor
ynel
iale
sV
erru
caria
les
Pyre
nula
les
Can
de-
laria
res
Ost
ropa
les s
.l.U
mbi
li-ca
riale
sB
aeo-
myc
etal
es
52
86
100
100
91
93
47
39
3397
92100
99
59
47
98
100100
100
99
8145
10078
7464
81
10087
99
94
93
66
50
78
100
76
79
67
99
100
100
98
84
9582
100
64100
92100
99
45
99
100100
100
29
71
100100
85
97
92
88
5995
7336
5956
91
100
5492
10093
99
100100
79
100
100
100
5846
6299
100100
10097
34
100
99
71
91
100
22
85100
100
88
99
Leca
nor
omyc
etes
Eu
roti
omyc
etes
Usnea sphacelata Usnea antarctica
Hypogymnia physodes Flavocetraria nivalis Canoparmelia caroliniana
Flavoparmelia caperata Cladonia caroliniana
Mycoblastus sanguinarius Lecanora hybocarpa
Crocynia pyxinoides Lopezaria versicolor
Bacidia schweinitzii Ramalina complanata
Physcia aipolia Heterodermia vulgaris Anaptychia palmulata
Buellia frigida Pyxine subcinerea
Megalospora tuberculosa Teloschistes exilis
Letrouitia domingensis Lobaria scrobiculata Pseudocyphellaria anomala Lobariella pallida
Peltigera degenia Nephroma parile
Collema cristatum Coccocarpia erythroxyli
Lecidea fuscoatra Rhizocarpon superficiale
Rhizocarpon oederi Stictis radiata Stictis urceolatum
Acarosporina microspora Glomerobolus gelineus Acarosporina microspora
Diploschistes ocellatus Phlyctis argena
Gyalecta jenensis Trapelia glebosa Phyllobaeis erythrella Phyllobaeis imbricata Hymenelia lacustris
Icmadophila ericetorum Dibaeis baeomyces
Pertusaria dactylina Pertusaria hemisphaerica
Loxospora ochrophaea Loxospora cismonica
Lasallia pustulata Lasallia papulosa
Umbilicaria mammulata Hypocenomyce scalaris
Boreoplaca ultrafrigida Acarospora laqueata Acarospora schleicheri
Pleopsidium chlorophanum Pleopsidium gobiense
Candelariella terrigena Candelariella reflexa
Dactylospora imperfecta Phialophora verrucosa
Dactylospora lobariella Capronia pilosella Exophiala dermatitidis Capronia munkii Ramichloridium anceps
Exophiala salmonis Exophiala pisciphila
Cyphellophora laciniata Glyphium elatum Sarcinomyces petricola
Ceramothyrium carniolicum Dermatocarpon miniatum Endocarpon pallidulum
Staurothele frustulenta Agonimia sp Pyrenula aspistea
Pyrgillus javanicus Pyrenula pseudobufonia
Granulopyrenis seawardii Eupenicillium javanicus
Eupenicillium limosum Penicillium freii
Aspergillus protuberus Emericella nidulans
Hamigera avellanea Monascus purpureus
Aspergillus fumigatus Chrysosporium georgiae
Coccidioides immitis Spiromastix warcupii
Ajellomyces capsulatum Caliciopsis pinea Caliciopsis orientalis
Dactylospora haliotrepha 1 Dactylospora haliotrepha 2
Dactylospora mangrovei Mycocalicium polyporeaum
Sphinctrina turbinata Peltula auriculata Peltula umbilicata
Lichinella iodopulchra Trichoglossum hirsutum
Geoglossum nigritum Sarcoleotia globosa
Tow
ards
Fig
. 7B
Supplemental Fig. 7C
Lich
inom
ycet
es
Chloroscypha enterochroma Ascocoryne sarcoides
Neobulgaria pura Dark septate endophyte
Bisporella citrina Loramyces macrosporus
Mollisia cinerea Vibrissea truncorum
Connersia rilstonii Leotiomycetous sp.
Cudoniella clavus cf. Lachnum virgineum
Botryotinia fuckeliana Sclerotinia sclerotiorum
Monilinia laxa Rutstroemia firma Lambertella subrenispora
Meria laricis Chlorociboria aeruginosa cf.
Cyttaria darwinii Blumeria gramini
Erysiphe glycines Dermea acerina Pezicula carpinea Neofabreae malicorticis
Thelebolus microsporus Thelebolus caninus
Leuconeurospora pulcherrima Pseudeurotium zonatum
Microglossum rufum Leotia lubrica
Naemacyclus fimbriatus Cyclaneusma minus
Phacidium lacerum Bulgaria inquinans Potebniamyces pyri
Coccomyces strobi Tryblidiopsis pinastriLe
otio
myc
etes
Rhy
tis-
mat
ales
Hel
o-ti
ales
1 Hel
o-ti
ales
2H
elo-
tial
es4
Hel
o-ti
ales
5H
elo-
tial
es8
Hel
o-ti
ales
6
Hel
o-ti
ales
3
Thel
e-bo
lale
s
Ery
-si
phal
es
Cy-
ttar
iale
sH
elot
iale
s7
Towards Fig. 7E
Towards Fig. 7C
67
98
60
10068
11
86
9989
38
8
99100
45100
99
3460
100
4
29
9985
4337
69100
5668
100
22
58100
58100
100
100
100
Supplemental Figure 7D
0.1 substitutions per site
Epichloë typhina Balansia henningsiana
Claviceps purpurea Cordyceps ophioglossoides Cordyceps capitata
Stachybotrys subsimplex Stachybotrys chartarum
Myrothecium roridum Peethambara spirostriata
Hypocrea lutea Hypocrea americana
Sphaerostilbella berkeleyana Cordyceps cardinalis Gibberella zeae
Nectria haematococca Ophionectria trichospora
Pseudonectria rousseliana Nectria cinnabarina
Niesslia exilis Hydropisphaera erubescens Acremonium murorum Roumegueriella rufula
Acremonium persicinum Bionectria ochroleuca Bionectria aureofulva cf.
Acremonium strictum Acremonium breve
Acremonium alternatum Emericellopsis maritima
Melanospora zamiae Melanospora tiffanyae
Bertia moriformis Chaetosphaerella phaeostroma
Etheirophora unijubata Torpedospora radiata
Nimbospora effusa Halosphaeria appendiculata
Lignincola laevis Aniptodera chesapeakensis Corollospora angusta
Corollospora maritima Sigmoidea marina
Varicosporina ramulosa Microascus longirostris Microascus trigonosporus
Doratomyces stemonitis Petriella setifera Graphium sp.
Graphium penicillioides Ceratocystis fimbriata
Ambrosiella xylebori Gondwanamyces capensis
Glomerella cingulata Verticillium dahliae
Lindra thalassiae Lulworthia grandispora
Lindra obtusa Lulworthia uniseptata
Lulworthia lignoarenaria Cryptodiaporthe aesculi Plagiostoma euphorbiae Apiognomonia errabunda Gnomonia gnomon
Cryptosporella hypodermia Melanconis marginalis Melanconis stilbostoma
Cryphonectria nitshckei Cryphonectria parasitica
Chrysoporthe cubensis Endothia gyrosa
Amphilogia gyrosa Valsella salicis Leucostoma niveum
Valsa ambiens Diaporthe phaseolorum
Diaporthe eres Mazzantia napelli Calosphaeria pulchella
Pleurostoma ootheca Togninia minima
Ophiostoma stenoceras 1 Ophiostoma stenoceras 2
Ophiostoma piliferum Annulusmagnus triseptatus
Thyridium vestitum Phomatospora bellaminuta
Lanspora coronata Papulosa amerospora
Gaeumannomyces medullaris Magnaporthe grisea
Neurospora crassa Gelasinospora tetrasperma Sordaria fimicola
Podospora anserina Lasiosphaeria ovina
Bombardia bombarda Chaetosphaeria tortuosa Chaetosphaeria ovoidea
Camarops ustulinoides Camarops microspora
Acremonium atrogriseum Coniochaeta ostreum Xylaria acuta Xylaria hypoxylon
Seynesia erumpens Graphostroma platystoma
Diatrype disciformis Eutypa lata Khuskia oryzae Apiospora montagnei
Amphisphaeria umbrina Anthostomella torosa
Pyxidiophora sp. Pyxidiophora avernensis
Hesperomyces virescens Stigmatomyces protrudens
163 188 189 193 192 X X X X 156 52 158 162 1082 161 190 191 159 X 186 1393 155 1391 154 187 1392 1395 1396 999 X X 1994 751 761 409 737 410 794 1237 914 1380 956 1837 1415 1906 1285 1907 1265 237 413 747 1238 X X 952 X 1167 936 X X X 1223 1985 X X X X 935 924 X 1038 910 172 766 736 748 734 1081 1078 1287 216
17 967 278 72 1361 1394 915 63 51 392 1249 927 929 2179 951 1229 732 X 2197 67 1834
7162
82
21
91
100
100
6277
43100
100
5069
58
42
97
80
71
4689
100
87
1894
100 67
100
93
65
89
9751
100100
77
79100
100
36
10084
85
97
70
100
92
99
100100
91100
100
100
9899
65
100100
100
92
9654
9678
100
97
51
32
15
83100
49
6399
59
100
10099
417044
90
77
60
58100
95
100100
10057
100
9899
90
Hyp
ocre
ales
Mic
roas
cale
s L
ulw
orth
iale
s D
iapo
rthal
es
Cal
o- sp
haer
iale
s
Oph
io-
stom
atal
esSo
rdar
iale
sX
ylar
iale
sBo
li-ni
ales Ch
aeto
-sp
haer
iale
s P
yx-
idi
opho
rale
s
Lab
oul-
ben
iale
sCo
nio-
chae
tale
s
Sord
ario
myc
etes
Labo
ul-
beni
omyc
etes
Mel
a- n
ospo
rale
s
Cor
- o
noph
oral
es
100
100
1007655
100
1009995
9771
100
98100
100
100100
38
42
0.1 substitutions per site
Tow
ards
Fig
. 7D
Supplemental Figure 7E
Ascomatal shape
EuLec
Leo
La
So
Sy
Li
Sa
PeGe Ar
Do
Ca
TaOu
Or
AbsentOstiolarExposedEnclosed
EuLec
Leo
La
So
Sy
Li
Sa
PeGe Ar
Do
Ca
TaOu
OrOperc.Deliq.Fissit.Por.Rostr.Nonp.
Ascus de-hiscence
EuLec
Leo
La
So
Sy
Li
Sa
PeGe Ar
Do
CaTaOu
Or
Non-marineMarine
MarineEuLec
Leo
La
So
Sy
Li
Sa
PeGe Ar
Do
Ca
TaOu
Or
Non-lichenizedLichenized
Lichenization Ascomatal development
YeastAscolocularAsco
EuLec
Leo
La
So
Sy
Li
Sa
PeGe Ar
Do
Ca
TaOu
Or
Supplemental Figure 8
