Biodiversity & Drupal柯智仁臺灣生物多樣性資訊機構中研院生物多樣性研究中心burkeker@gate.sinica.edu.tw

July 10th, 2010 中研院活動中心

生物多樣性？

image: http://web1.nsc.gov.tw/ct.aspx?xItem=7991&ctNode=40&mp=1

生物多樣性「資訊」？•含有物種名稱、以不同形式記載的...

•標本•觀測紀錄•影像•描述•去氧核醣核酸序列 (DNA)

• ...

•以物種學名加以連結

cc by-nd Nick Kurzenko, Greg Rouse, and the U. S. Fish and Wildlife Service

線上內容維護•以大英博物館(NHM)為例

優點 • 高品質• 安排妥當 • 識別度高

缺點 • 不易管理 • 不易更新• 過於博物館導向• 缺乏服務• 所有權不明• 連結性低• 步調緩慢

Lepidoptera

Chalcid Wasps

British Fleas

Martian Meteorites

SolanaceaeSpanish Sandflies

Loch Ness Worms Bumble bees a slide from V.Smith

內容管理系統

Joomla WordPress

DrupalPlone

a slide from V.Smith

系統比較

http://www.idealware.org/comparing_os_cms/a slide from V.Smith

http://scratchpads.eu a multisite implementation of Drupal

a slide from V.Smith

a slide from V.Smith

BiotaTaiwanica - a pilot Drupal project

•名錄及描述資料•目前使用 LifeDesks 模組，正評估 ScratchPads 模組以拓及其它內容

•概念站台http://psybugs.biota.biodiv.tw

tags

latin names

keywords node

node

node

node

vernaculars

categories

image

citation

collecting event

specimen

description

node

literatures

diagnostic descriptions

collecting events

specimens

image metadata

•線上出版流程斷離

展望

Content Types Workflows Products

Taxonomic Information (Name data)

IUCN red listISSG invasive speciesCBD indicators

Darwin Core Checklist Archive (DwC-A)

(system components)

Taxonomic Backbone

Validation Service /File Archiving Service

attributes

Data Store

GIS-ReadyData Store

MetadataAnnotation layers

Species occurrence: pointsSpecies occurrence: polygons

Environmental spatial features - Habitats - Ecosystems - Climate - GeographicOther types of spatial data

MetadataCatalogue

Species Profiling Service

Modeling/StatisticalService

Other service workflows

query producer

Species Profiles (TDWG)Plazi TaxonX

Metadata Packaging Service

Modeling Resultse.g. diagrams, numerical matricsConnections to R

Mapping Service

CASSIA, EML, FGDC-BDP, ISO-19115 or other metadata formats

WMS, WFS

Other results

Species descriptionMultimedia / digital objects - derivedLIterature

Content Types Workflows Products

Taxonomic Information (Name data)

IUCN red listISSG invasive speciesCBD indicators

Darwin Core Checklist Archive (DwC-A)

(system components)

Taxonomic Backbone

Validation Service /File Archiving Service

attributes

Data Store

GIS-ReadyData Store

MetadataAnnotation layers

Species occurrence: pointsSpecies occurrence: polygons

Environmental spatial features - Habitats - Ecosystems - Climate - GeographicOther types of spatial data

MetadataCatalogue

Species Profiling Service

Modeling/StatisticalService

Other service workflows

query producer

Species Profiles (TDWG)Plazi TaxonX

Metadata Packaging Service

Modeling Resultse.g. diagrams, numerical matricsConnections to R

Mapping Service

CASSIA, EML, FGDC-BDP, ISO-19115 or other metadata formats

WMS, WFS

Other results

Species descriptionMultimedia / digital objects - derivedLIterature

LifeDesks Classification modules (EOL) - utilize Drupal taxonomy - provide editable name flags - easy drag & drop edit interface - export in Darwin Core & other formats

LifeDesks Taxon Page modules (EOL) - create content type: Taxon Page - map to Species Profile Model - customizable headers and chapters - connect to EOL as a content partner

Image module (community)and others designed to handlevarious media types

Biblio module (community) - provides forms for managing citations - BibTex import/export - redirect to Google Scholar

Darwin Core module (ScratchPads) - combined with Location module and Gmap module - handle specimen and observation data

Modules for handling geospatial data - may need to combine with other geospatical solutions

Profile - settings of a functioning site - used of quickly setup of a new site

Modules for attributing name entries - maybe one more biological flag needed

WFS module - export geodata as WFS

Taxonomy module (Drupal core) - defines vocabulary - classification is one vocabulary - allows multiple tagging - ability to relate between terms

Location module - manage locality and coordinate

Gmap module - provide Google Map layer

Nice Map module - provide Google Map layer

CCK + Views - create content type - include custom fields - provide forms for entering data - publish as XML using Views modules

Modules for connecting tostatistical solutions

國際生物多樣性年

Biodiversity is lifeBiodiversity is our life

生物多樣性是生命生物多樣性是我們的生命

感謝 Drupal 社群！

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