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Jennifer Lin, [email protected]/0000-0002-9680-2328
CSE 2018, 8 May 2018
Preprints - Crossref’s view of the expanding territories
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• preprints• conf papers
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42,541 preprints
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Volume of registered preprints in Crossref
Jordan Anaya, PrePubMed http://www.prepubmed.org/monthly_stats/
Preprints by publisher (May 5, 2018)• bioRxiv: 24,571• PeerJ Preprints: 8,974• Preprints.org: 4,211• JMIR Preprints: 2,090• ChemRxiv: 729• Therapoid (Open Therapeutics): 2
Preprints metadata• Repository name & hosting platform• Contributors & ORCID• Title• Dates (posted, accepted)• License• Funding• Abstract• Relations• References
Metadata currently depositedOut of 42,541 records, the following metadata have been registered:• License: 9710, 23% (PeerJ Preprints, ChemRxiv)• Funder: 0, 0%• ORCID: 18239, 43% (bioRxiv, PeerJ Preprints,
Preprints.org, ChemRxiv)• Abstracts: 34508, 81% (bioRxiv, PeerJ Preprints, ChemRxiv)• References: 1740, 4% (JMIR) Crossref REST API
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Metadata deposited (all Crossref records)
12,983 articles published from preprints
10.20844/preprints201608.0191.v1 is a preprint of10.3390/data1030014
“Hey Crossref, which papers in my journals have preprints?” Let me check
the REST API…
Let me check the Citedby count in the REST API…
“Hey Crossref, what are my most cited preprints?”
It’s all about relations:relationship types connect the article with its resources
Research nexus: ClusterflockClusterflock: an algorithm optimizing distance-based clusters in orthologous gene families that share an evolutionary history• Paper: https://doi.org/10.1186/s13742-016-0152-3• Preprint: https://doi.org/10.1101/045773 • Supporting data: http://dx.doi.org/10.5524/100247 • Code: https://github.com/narechan/clusterflock • Docker hub: https://hub.docker.com/r/narechan/clusterflock-0.1 • Video demo: https://youtu.be/ELZTVOiqKn8 • Peer reviews: https://doi.org/10.5524/review.100507 and https://
doi.org/10.5524/review.100508
Article
• shares• mentions
• discussions• citations
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Activities surrounding itLiterature
Most highly cited preprints1.Citedby 71 - https://doi.org/10.1101/005165 qqman: an R package for visualizing GWAS results using Q-
Q and manhattan plots. May 14, 2014. 2.Citedby 63 - https://doi.org/10.1101/002824 HTSeq - A Python framework to work with high-throughput
sequencing data. August 19, 2014. (10.1093/bioinformatics/btu638, 2288 citations) 3.Citedby 43 - https://doi.org/10.1101/030338 Analysis of protein-coding genetic variation in 60,706
humans. May 10, 2016. (10.1038/nature19057, 1518 citations) 4.Citedby 38 - https://doi.org/10.1101/002832 Moderated estimation of fold change and dispersion for RNA-
seq data with DESeq2. November 17, 2014. (10.1186/s13059-014-0550-8, 3168 citations) 5.Citedby 28 - https://doi.org/10.1101/021592 Salmon provides accurate, fast, and bias-aware transcript
expression estimates using dual-phase inference. August 30, 2016. (10.1038/nmeth.4197, 103 citations) 6.Citedby 21 - https://doi.org/10.1101/012401 DensiTree 2: Seeing Trees Through the Forest. December 8,
2014. 7.Citedby 21 - https://doi.org/10.1101/011650 FusionCatcher - a tool for finding somatic fusion genes in
paired-end RNA-sequencing data. November 19, 2014. 8.Citedby 18 - https://doi.org/10.1101/006395 Error correction and assembly complexity of single molecule
sequencing reads. June 18, 2014. 9.Citedby 18 - https://doi.org/10.1101/032839 Spread of the pandemic Zika virus lineage is associated with
NS1 codon usage adaptation in humans. November 25, 2015. 10.Citedby 17 - https://doi.org/10.1101/048991 Analysis of shared heritability in common disorders of the
brain. September 6, 2017.
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