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Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 [email protected] u

Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 [email protected]

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Page 1: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Course Introduction: The Brain, chemistry, neural signalingJerome FeldmanSrini NarayanCS182/Ling109/CogSci110Spring [email protected]

Page 2: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

http://inst.eecs.berkeley.edu/~cs182/sp08/

Lecture Overview

Course introduction Neural Processing: Basic Issues Neural Communication: Basics

Page 3: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Instructor Contact Instructor : Srini Narayanan

Office Hours : Email: [email protected]

Instructor : Jerome FeldmanOffice Hours : Monday 1 – 2, Thur. 2:30-3:30Email : [email protected]

TA: Leon BarrettOffice Hours :Email: [email protected]

Page 4: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

The Neural Theory of Language and Thought This is a course on the current status of interdisciplinary

studies that seek to answer the following questions: How is it possible for the human brain, which is a highly

structured network of neurons, to think and to learn, use, and understand language?

How are language and thought related to perception, motor control, and our other neural systems, including social cognition?

How do the computational properties of neural systems and the specific neural structures of the human brain shape the nature of thought and language?

What are the applications of neural computing and embodied language?

Page 5: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Learning

I hear and I forget

I see and I remember

I do and I understand

attributed to Confucius 551-479 B.C.

Page 6: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Tinbergen’s Four Questions

How does it work?

How does it improve fitness?

How does it develop and adapt?

How did it evolve?

Page 7: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Single Cell (Protozoan) Behaviors

No Nervous System Foraging Behavior (move toward food)

Positive chemotaxis

Defensive/Avoidance Behavior Negative chemotaxis

Reproduction Asexual and Sexual reproduction using chemical

messenger proteins (pheromones)

Page 8: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 9: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Earliest Nervous Systems

Earliest neurons dispensed hormones Hydra, jellyfish, corals, sea anemones Basic neural cell (Neuron) Early differentiation into 3 types of neurons

STIMULUS

SensoryNeuron

Inter-Neuron

MotorNeuron E

ffec

tor

Page 10: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Neural Processing

Page 11: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Neurons

• cell body• dendrites (input structure)

receive inputs from other neurons perform spatio-temporal integration

of inputs relay them to the cell body

• axon (output structure) a fiber that carries messages

(spikes) from the cell to dendrites of other neurons

Page 12: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

postsynapticneuron

science-education.nih.gov

Page 13: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Synapse

• site of communication between two cells

• formed when an axon of a presynaptic cell “connects” with the dendrites of a postsynaptic cell

Page 14: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Synapseaxon of presynaptic

neuron

dendrite ofpostsynapticneuron

bipolar.about.com/library

Page 15: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Synapse• a synapse can be excitatory or

inhibitory• arrival of activity at an excitatory

synapse depolarizes the local membrane potential of the postsynaptic cell and makes the cell more prone to firing

• arrival of activity at an inhibitory synapse hyperpolarizes the local membrane potential of the postsynaptic cell and makes it less prone to firing

• the greater the synaptic strength, the greater the depolarization or hyperpolarization

Page 16: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 17: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

UNIPOLAR BIPOLAR

MULTIPOLAR CELLS

Page 18: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Brains ~ Computers

1000 operations/sec 100,000,000,000 units 10,000 connections/ graded, stochastic embodied fault tolerant evolves, learns

1,000,000,000 ops/sec 1-100 processors ~ 4 connections binary, deterministic abstract crashes designed, programmed

Page 19: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Broca’sarea

Parsopercularis

Motor cortex Somatosensory cortex

Sensory associativecortex

PrimaryAuditory cortex

Wernicke’sarea

Visual associativecortex

Visualcortex

Page 20: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

PET scan of blood flow for 4 word tasks

Page 21: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Somatotopy of Action ObservationSomatotopy of Action Observation

Foot ActionFoot Action

Hand ActionHand Action

Mouth ActionMouth Action

Buccino et al. Eur J Neurosci 2001

Page 22: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 23: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 24: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 25: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Neural Communication: 1 Processing within the cell

Page 26: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Transmission of information

Information must be transmitted within each neuron and between neurons

Page 27: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

The Membrane

The membrane surrounds the neuron. It is composed of lipid and protein.

Page 28: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Artist’s rendition of a typical cell membrane

Page 29: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

The Resting Potential

There is an electrical charge across the membrane. This is the membrane potential. The resting potential (when the cell is not firing) is a

70mV difference between the inside and the outside.

inside

outside

Resting potential of neuron = -70mV

+

-

+

-

+

-

+

-

+

-

Page 30: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Ions and the Resting Potential

Ions are electrically-charged molecules e.g. sodium (Na+), potassium (K+), chloride (Cl-).

The resting potential exists because ions are concentrated on different sides of the membrane.

Na+ and Cl- outside the cell. K+ and organic anions inside the cell.

inside

outsideNa+Cl-Na+

K+

Cl-

K+

Organic anions (-)

Na+Na+

Organic anions (-)

Organic anions (-)

Page 31: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Maintaining the Resting Potential Na+ ions are actively transported (this uses

energy) to maintain the resting potential. The sodium-potassium pump (a membrane

protein) exchanges three Na+ ions for two K+

ions.

inside

outside

Na+

Na+

K+K+

Na+

Page 32: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 33: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Neuronal firing: the action potential The action potential is a rapid

depolarization of the membrane. It starts at the axon hillock and passes

quickly along the axon. The membrane is quickly repolarized to

allow subsequent firing.

Page 34: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Action potentials: Rapid depolarization When partial depolarization reaches the activation

threshold, voltage-gated sodium ion channels open. Sodium ions rush in. The membrane potential changes from -70mV to +40mV.

Na+

Na+

Na+

-

+

+

-

Page 35: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Depolarization

Page 36: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Action potentials: Repolarization

Sodium ion channels close and become refractory. Depolarization triggers opening of voltage-gated potassium

ion channels. K+ ions rush out of the cell, repolarizing the membrane.

K+ K+

K+Na+

Na+

Na+

+

-

Page 37: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Repolarization

Page 38: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

The Action Potential

The action potential is “all-or-none”. It is always the same size. Either it is not triggered at all - e.g. too little

depolarization, or the membrane is “refractory”;

Or it is triggered completely.

Page 39: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 40: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Action Potential

Page 41: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Conduction of the action potential.

Passive conduction will ensure that adjacent membrane depolarizes, so the action potential “travels” down the axon.

But transmission by continuous action potentials is relatively slow and energy-consuming (Na+/K+ pump).

A faster, more efficient mechanism has evolved: saltatory conduction.

Myelination enables saltatory conduction.

Page 42: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Myelination

Most mammalian axons are myelinated. The myelin sheath is provided by oligodendrocytes and

Schwann cells. Myelin is insulating, preventing passage of ions through

the membrane.

Page 43: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Saltatory Conduction

Myelinated regions of axon are electrically insulated. Electrical charge moves along the axon rather than

across the membrane. Action potentials occur only at unmyelinated regions:

nodes of Ranvier.

Node of RanvierMyelin sheath

Page 44: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Synaptic transmission Information is transmitted from the presynaptic

neuron to the postsynaptic cell. Chemical neurotransmitters cross the synapse,

from the terminal to the dendrite or soma. The synapse is very narrow, so transmission is

fast.

Page 45: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

terminal

dendritic spine

synaptic cleftpresynaptic membrane

postsynaptic membrane

extracellular fluid

Structure of the synapse An action potential causes neurotransmitter

release from the presynaptic membrane. Neurotransmitters diffuse across the synaptic

cleft. They bind to receptors within the postsynaptic

membrane, altering the membrane potential.

Page 46: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Neurotransmitter release Ca2+ causes vesicle membrane to fuse with

presynaptic membrane. Vesicle contents empty into cleft: exocytosis. Neurotransmitter diffuses across synaptic

cleft.

Ca2+

Page 47: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 48: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu
Page 49: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Ionotropic receptors (ligand gated) Synaptic activity at ionotropic receptors

is fast and brief (milliseconds). Acetylcholine (Ach) works in this way

at nicotinic receptors. Neurotransmitter binding changes the

receptor’s shape to open an ion channel directly.

ACh ACh

Page 50: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Ionotropic Receptors

Page 51: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Excitatory postsynaptic potentials (EPSPs)

Opening of ion channels which leads to depolarization makes an action potential more likely, hence “excitatory PSPs”: EPSPs. Inside of post-synaptic cell becomes less negative. Na+ channels (NB remember the action potential) Ca2+ . (Also activates structural intracellular changes ->

learning.)

inside

outsideNa+ Ca2+

+

-

Page 52: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Inhibitory postsynaptic potentials (IPSPs)

Opening of ion channels which leads to hyperpolarization makes an action potential less likely, hence “inhibitory PSPs”: IPSPs. Inside of post-synaptic cell becomes more negative. K+ (NB remember termination of the action potential) Cl- (if already depolarized)

K+

Cl- +

- inside

outside

Page 53: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Postsynaptic Ion motion

Page 54: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Requirements at the synapse

For the synapse to work properly, six basic events need to happen: Production of the Neurotransmitters

Synaptic vesicles (SV) Storage of Neurotransmitters

SV Release of Neurotransmitters Binding of Neurotransmitters

Lock and key Generation of a New Action Potential Removal of Neurotransmitters from the Synapse

reuptake

Page 55: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Integration of information PSPs are small. An individual EPSP will not produce

enough depolarization to trigger an action potential. IPSPs will counteract the effect of EPSPs at the

same neuron. Summation means the effect of coincident IPSPs

and EPSPs at one neuron. If there is sufficient depolarization at the axon

hillock, an action potential will be triggered.

axon hillock

Page 56: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Three Nobel Prize Winners on Synaptic Transmission

Arvid Carlsson discovered dopamine is a neurotransmitter. Carlsson also found lack of dopamine in the brain of Parkinson patients.

Paul Greengard studied in detail how neurotransmitterscarry out their work in the neurons. Dopamine activated a certain protein (DARPP-32), which could change the function of many other proteins.

Eric Kandel proved that learning and memory processes involve a change of form and function of the synapse, increasing its efficiency. This research was on a certain kind of snail, the Sea Slug (Aplysia). With its relatively low number of 20,000 neurons, this snail is suitable for neuron research.

Page 57: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

Neuronal firing: the action potential The action potential is a rapid

depolarization of the membrane. It starts at the axon hillock and passes

quickly along the axon. The membrane is quickly repolarized to

allow subsequent firing.

Page 58: Course Introduction: The Brain, chemistry, neural signaling Jerome Feldman Srini Narayan CS182/Ling109/CogSci110 Spring 2008 feldman@icsi.berkeley.edu

How does it all work?

One page written assignment

Due in class: January 29 2008