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Biocomputing:
Computing Applications in theBiological Sciences
BIOS 480
Computer Anatomy
Biocomputing:
Computing Applications in theBiological Sciences
BIOS 480
Computer Anatomy
Revised: 8-10-05Revised: 8-10-05
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Basic ComponentsBasic Components
Form FactorForm Factor
ATxATx
CaseCase
Power SupplyPower Supply
MotherboardMotherboard
Expansion CardsExpansion Cards
Input DevicesInput Devices
Output DevicesOutput Devices
Storage DevicesStorage Devices
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Cases:Cases:
DesktopDesktop MiniMini--towertower
TowerTower
ServerServer
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Power Supply:Power Supply:
ATXATX Generally 90Generally 90 --
250 watts250 watts
To MotherboardTo Motherboard
To DrivesTo Drives
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Motherboard:Motherboard:
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Motherboard Components: CPUMotherboard Components: CPU
Microprocessor or CentralMicroprocessor or Central ProcesssingProcesssing
UnitUnit
Flavors:
Intel AMD
Advanced Micro Devices
Cyrix
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Motherboard Components: CPUMotherboard Components: CPU
Pentium IIPentium II
Pentium IIIPentium III
CeleronCeleron
Pentium IVPentium IV
Microprocessors or Central Processing Units:
Intel x86 Architecture
80868086
286286
386 / 386386 / 386 sxsx
486486 dxdx / 486/ 486 sxsx
PentiumPentium--SSPentium ProPentium Pro
Pentium MMXPentium MMX
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MB - MicroprocessorsMB - Microprocessors
PC CPUsPC CPUs -- HistoricHistoric
80868086: (1978) 29k Transistors: (1978) 29k Transistors
IBM PC / 4.7 to 10IBM PC / 4.7 to 10 mHzmHz
Pentium IVPentium IV (2002) 55 m Transistors(2002) 55 m Transistors
up to 3.2up to 3.2 gHzgHz
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MB - MicroprocessorsMB - Microprocessors
The Pentium 4 processor is available at speeds ranging from
1.30 to 3.2 GHz.
Featuring the new Intel NetBurst micro-architecture.
The Pentium 4 processor supports Intel's highest performancedesktop system bus by delivering 3.2 GB of data per second into
and out of the processor for sustained M800-mHz data transfers.
This compares to 1.06 GB/s delivered on the Pentium III
processor's 133-MHz system bus.
Fully compatible with existing Intel Architecture-based
software.
Internet Streaming SIMD Extensions.
Intel MMX media enhancement technology.
Memory cacheability up to 4 GB of addressable memory space
and system memory scalability up to 64 GB of physical memory.
Based upon Intel's 0.18 micron manufacturing process.
Pentium IV:
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Motherboard Components: CPUMotherboard Components: CPU
PentiumPentium -- SS
PentiumPentium -- IVIV
PentiumPentium -- IIIIII
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Motherboard Components: CPUMotherboard Components: CPU
SocketSocket vsvs SlotSlot
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MB - MicroprocessorsMB - Microprocessors
CPU Pin Outs, PentiumCPU Pin Outs, Pentium vsvs 486486
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Motherboard: ChipsetMotherboard: Chipset
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MB - ChipsetMB - Chipset
A collection of chips (integrated circuits),A collection of chips (integrated circuits),
such as the programmable interruptsuch as the programmable interrupt
controller, that support the CPU.controller, that support the CPU.
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Motherboard: Memory - ROMMotherboard: Memory - ROM
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Memory - ROM / CMOS RAMMemory - ROM / CMOS RAM
ROMROM: Read Only Memory: Read Only MemorySemiSemi--permanentpermanent
e.g. ROMe.g. ROM BIOSBIOS (Basic Input Output System)(Basic Input Output System)
e.g. AMI, Phoenix, Awarde.g. AMI, Phoenix, Award
CMOS RAMCMOS RAM
Complimentary metal oxide superconductorComplimentary metal oxide superconductor
BatteryBattery--backed memory used to store systembacked memory used to store system
specific parameters required by the systemspecific parameters required by the system
BIOS to boot.BIOS to boot.
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Motherboard: RAMMotherboard: RAM
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Memory - RAMMemory - RAM
Classic Simms and
Dimms
Rambus Rimms and Continuity
Modules
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Motherboard: Data BusMotherboard: Data Bus
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MB - Data BusMB - Data Bus
1979:1979: ISAISA -- Industry Standard ArchitectureIndustry Standard Architecture19811981 -- IBM XT: 8 bit BusIBM XT: 8 bit Bus
19841984 -- IBM AT: 16 bit BusIBM AT: 16 bit Bus 1987:1987: EISAEISA -- Extended ISA (32 bit)Extended ISA (32 bit)
1987:1987: MCAMCA -- MicrochannelMicrochannel ArchitectureArchitecture 1990:1990: VESAVESA -- Local Bus (32 bit)Local Bus (32 bit)
1993:1993: PCIPCI -- Peripheral ComponentsPeripheral ComponentsInterface (32 bit)Interface (32 bit)
1998:1998: AGPAGP -- Accelerated Graphics PortAccelerated Graphics Port
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MB - Data Bus: Edge ConnectorsMB - Data Bus: Edge Connectors
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Expansion Cards (Adaptors)Expansion Cards (Adaptors)
Usually Integrated NowadaysUsually Integrated Nowadays FDD / HDD ControllerFDD / HDD Controller
I/OI/O -- Parallel / Serial Com BoardParallel / Serial Com Board
Often Integrated on Budget SystemsOften Integrated on Budget Systems VideoVideo
SoundSound
Network Interface Card (NIC)Network Interface Card (NIC)
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Expansion Cards (Adaptors)Expansion Cards (Adaptors)
Other AddOther Add OnsOns SCSI (Small Computer Systems Interface)SCSI (Small Computer Systems Interface)
IEEEIEEE--1394 (FireWire or1394 (FireWire oriLinkiLink))
VideoCaptureVideoCapture
USBUSB -- Universal Serial BusUniversal Serial Bus
ModemModem
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Expansion Cards (Adaptors)Expansion Cards (Adaptors) SCSI (Small Computer Systems Interface)SCSI (Small Computer Systems Interface)
IEEEIEEE--1394 (FireWire or I1394 (FireWire or I--Link)Link)
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Modems: Internal / ExternalModems: Internal / External
Modems and Broadband ConnectivityModems and Broadband Connectivity Modem (Modem (MODMODulationulation -- DEMDEModulationodulation))
Classic Modems on POTSClassic Modems on POTS Plain Old Telephone SystemPlain Old Telephone System
The Old DaysThe Old Days
1,200 baud to 33.61,200 baud to 33.6 kbskbs v90 and K2 Standards 56v90 and K2 Standards 56 kbskbs
ISDN:ISDN: Integrated Services Digital Network (128 kbs)
Broad BandBroad Band ADSLADSL -- Asynchronous Digital Subscriber Line (POTS)Asynchronous Digital Subscriber Line (POTS)
Cable Modem (COAX)Cable Modem (COAX)
Satellite (COAX / POTS)Satellite (COAX / POTS)
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Modems: Internal / ExternalModems: Internal / External External:External:
Cable Modem withCable Modem with
coaxcoax--in and cat5in and cat5 -- RJ45RJ45
terminationtermination
56 K modem with56 K modem withpots/RJ11pots/RJ11 -- in andin and
serial terminationserial termination
InternalInternal
33.6 K ISA bus modem33.6 K ISA bus modem
card with RJ11card with RJ11 -- inin
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Modular Connectors:Modular Connectors:
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Storage Devices (Drives):Storage Devices (Drives):
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Storage Devices:Storage Devices:
FDDFDD -- Floppy Disk DriveFloppy Disk Drive
3.5, HD 1.443.5, HD 1.44 mbmb (LD:720 kb)(LD:720 kb)
HDDHDD -- Hard Disk Drive Types:Hard Disk Drive Types: 4040 gbgb typicaltypical
EIDEEIDE -- Enhanced Integrated Drive ElectronicsEnhanced Integrated Drive ElectronicsSATASATASerial ATASerial ATA
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Storage Devices:Storage Devices:
Removable Media:Removable Media:
DVD Digital Versatile DiscDVD Digital Versatile Disc (8.5(8.5 gbgb))
CDCD--ROMROM (650(650 mbmb))
CDCD--WriteableWriteable
CDCD--ReWritableReWritable
ZipZip (100(100 mbmb) (250) (250 mbmb -- 750750 mbmb))
JazzJazz (1,000(1,000 mbmb) (2) (2 gbgb))
MOMO: Magneto: Magneto--opticaloptical
Tape: Up to 320Tape: Up to 320 gbgb (DLT)(DLT)
RecentRecent
Portable USB/IEEE 1394 Hard DisksPortable USB/IEEE 1394 Hard Disks
Memory Cards and Memory SticksMemory Cards and Memory Sticks
Jump DrivesJump Drives
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Recent Storage Devices and Media:Recent Storage Devices and Media:
FirewireFirewire -- hardhard
diskdisk
USB FlashUSB Flash
memory readermemory reader
and mediaand media
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Storage Devices:Storage Devices:
MediaMedia
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I/O: InputI/O: Input
KeyboardKeyboard
MouseMouse
VoiceVoice
JoystickJoystick
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I/O: InputI/O: Input
Scanners / Digitizing TabletsScanners / Digitizing Tablets
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I/O: Output - Displays
(Monitors):
I/O: Output - Displays
(Monitors):
VGAVGA -- Video GraphicsVideo Graphics
AdapterAdapter
SVGASVGA -- Super VGASuper VGAXVGAXVGA
Dot Pitch / FrequencyDot Pitch / Frequency
ResolutionResolution
Refresh RateRefresh Rate
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I/O: Output - Displays:
LCD Displays
I/O: Output - Displays:
LCD Displays
Flat Panel LCD
Advanced Digital FlexRes
Technology
Built-In Stereo Speakers
Dual Inputs for Analog and
Digital (HD15/DVI-I)
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I/O: OutputI/O: OutputColor DepthColor Depth
65,000 colors, 24 million colors65,000 colors, 24 million colors
((HiColorHiColor,, True ColorTrue Color))
resolutionsresolutions --
1024x768, 1280x1024, 1600x12001024x768, 1280x1024, 1600x1200
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I/O: OutputI/O: OutputPrintersPrinters
LaserjetLaserjet
Dye SublimationDye Sublimation
InkjetInkjet
Dot MatrixDot Matrix
DaisywheelDaisywheel
PlottersPlottersSoundSound
CC AudioAudio -- VideoVideo
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Convergence:Convergence: AudioAudio VideoVideo
Home TheaterHome Theater
Home Automation (XHome Automation (X--10)10)
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Convergence:
Internet
Convergence:
Internet