1
1. Compugen Ltd, Holon Israel 2. Bloomberg~Kimmel Ins�tute for Cancer Immunotherapy, Johns Hopkins University, Bal�more MD * These authors contributed equally COMPUTATIONAL DISCOVERY AND EXPERIMENTAL VALIDATION OF CGEN-15032 AS A NOVEL TARGET FOR CANCER IMMUNOTHERAPY Ofer Levy 1* , Sudipto Ganguly 2* , Ilan Vaknin 1 , Eran Ophir 1 , Einav Safion 1 , Inbal Barbiro 1 , Yosef Diken 1 , Liat Dassa 1 , Tal Friedman 1 , Zoya Alteber 1 , Gady Cojocaro 1 , Nir Rainy 1 , Yair Benita 1 , Benjamin Murter 2 , Xiaoyu Pan 2 , Debebe Theodros 2 , Rupashree Sen 2 , Ayelet Chajut 1 , Vered Daniel Carmi, Zurit Levine 1 , Yona Geffen 1 , Drew Pardoll 2 and Arthur Machlenkin 1 . Compugen is presenting this information as of the date of the presentation and expressly disclaims any duty to update the information contained in this presentation. This presentation contains scientific and commercial information from third-party sources, including data from studies conducted by others . Although Compugen believes that such information is reliable, we have not independently verified any of this information and we do not guarantee the accuracy or completeness of this information. CGEN-15032 GENE KO RESULTS IN DELAYED TUMOR GROWTH IN VIVO GENE STRUCTURE HOMOLOGY HIGHLIGHTS CGEN-15032 AS A NOVEL IMMUNE CHECKPOINT CGEN-15032 IS EXPRESSED IN THE TUMOR MICRO-ENVIRONMENT AND INHIBITS T CELL ACTIVATION COMPUGEN: FROM CODE TO CURE CGEN-15032 INHIBITS TUMOR INFILTRATING LYMPHOCYTE (TIL) ACTIVITY SIMILAR TO PDL1 SUMMARY CGEN-15032 EXPRESSION AT PROTEIN LEVEL IS HIGHER IN NSCLC RELATIVE TO NORMAL LUNG TISSUES EXPRESSION OF CGEN-15032 IN HUMAN AND MOUSE DENDRITIC CELLS (DCs) DISCOVERY OF NOVEL IMMUNE CHECK-POINTS 15032 WAS DISCOVERED BY GENE STRUCTURE HOMOLOGY INTRODUCTION An�body blockade of CTLA4 and PD-1 immune checkpoints emerged as an effec�ve treatment modality for cancer. However, most pa�ents do not achieve sustained benefit, sugges�ng a need for targe�ng of addi�onal immune checkpoints. Towards predic�on of novel immune checkpoints, we developed a set of computa�onal tools including gene structure alignment for the iden�fica�on of func�onal homologs for B7/CD28 genes in the absence of sequence similarity. This discovery pla�orm has been tested and validated extensively and has demonstrated its validity by iden�fying novel immune checkpoints such as TIGIT and PVRIG, which are currently in preclinical development by Compugen. This predic�ve pla�orm was employed to iden�fy an addi�onal immuno-modulatory target, designated CGEN-15032. CGEN-15032 is expressed on cancer cells and on the myeloid component of immune infiltrate within the tumor microenvironment. Several human and mouse in vitro experimental systems have demonstrated an immune-modulatory effect for CGEN-15032. Ectopically expressed CGEN-15032 dampened an�-melanoma ac�vity of tumor-infiltra�ng lymphocytes, derived from melanoma pa�ents. In line with the effect observed in human system, over expression of murine CGEN-15032 in ar�ficial an�gen-presen�ng cells resulted in reduced ac�vity of TCR-transgenic DO11.10 T cells. These func�onal data, in conjunc�on with the expression of 15032 on myeloid and tumor cells, suggest that 15032 is a ligand and part of a novel pathway that inhibits T cell func�on. For Some Immune Genes, Gene Structure is More Conserved Than Sequence. To study the immuno-modulatory func�on of CGEN-15032 and its role in an�-cancer immunity, we generated CGEN-15032 knock-out (KO) mice. MC38 tumors grew slower in CGEN-15032 KO rela�ve to wild-type mice (in average 47%, p<0.01). Furthermore, a combinatorial treatment of CGEN-15032 deficient mice with an�-PDL1 an�body resulted in tumor growth inhibi�on compared with an�-PDL1 treated wild-type mice (in average 40%, p<0.05). Taken together, these data provide experimental valida�on of our computa�onal discovery approach and highlight CGEN-15032 as an a�rac�ve target for cancer immunotherapy. Developing first-in-class therapeu�cs based on computa�onal predic�ve discovery of novel targets CGEN-15032 is a gene structure homolog of B7H3 FROM CODE TO CURE TM IL2 and PD1 have no sequence homologs Both share gene structure homology with func�onally related genes GTEX and TCGA databases CGEN-15032 INHIBITS Ag-SPECIFIC ACTIVATION OF MURINE CD4 T CELL DELAYED MC38 TUMOR GROWTH IN CGEN-15032 KO MICE n=4 MC38 Wild-Type vs CGEN-15032 KO Ganguly and Pardoll, Johns Hopkins University 46% TGI (p<0.01) 43% TGI (p<0.01) CGEN-15032 is a novel target iden�fied by the immune checkpoint func�onal homology computa�onal pla�orm Expression analysis reveals broad expression on epithelial and endothelial cells as well as specific sub-sets of dendri�c cells In vitro checkpoint ac�vity demonstrated in human and mouse experimental systems Human and mouse surrogate an�bodies being generated In vivo tumor growth inhibi�on demonstrated with CGEN-15032 KO mice, both alone and in combina�on with an�-PDL1 treatment Expressed in many tumor types and normal �ssues No substan�al normal vs. cancer differen�al expression at RNA level Expressed on epithelial and endothelial cells as well as immune-cell sub-sets Epithelial expression is similar to B7H3 and CEACAM1 CGEN-15032 RNA IS EXPRESSED SIMILARLY ACROSS HUMAN NORMAL AND CANCER TISSUES Serial sec�ons of NSCLC �ssue stained with CGEN-15032 RNAscope probe and CGEN-15032 Ab IHC H-score IHC H-score Study 1 110 cancer 10 normal Study 2 111 cancer 32 normal Mouse tumor DCs Human DCs Expression (log2(Probe Intensity)) Expression (RPKM) RNA expression in subpopula�ons of human DCs RNA expression in CD103+ DCs isolated from mouse tumors B7 Ligands B7 Receptors CGEN-15032 over expression on melanoma cells dampens Ag-specific ac�va�on of TILs Similar effects observed in 3 addi�onal TILs Similar effects observed with addi�onal read-outs (TNFα, IL2, prolifera�on and ac�va�on markers) CGEN-15032 over expression on CHO-S-IAd cells dampens CD4+ DO11 T cell func�on Similar effects observed with addi�onal read-outs (TNFa and IL2) 624 Melanoma gp100/MART1 specific TIL MART-1 reac�ve melanoma TILs I-Ad CGEN-15032 Counterpart TCR pep�de FROM CODE TO CURE TM RNA-Scope Ab-An�- CGEN-15032 mock mock mock PDL1 mock 15032 mock 15032 mock 15032 PDL1 PDL1

COMPUTATIONAL DISCOVERY AND EXPERIMENTAL …Zurit Levine˜, Yona Geffen ˜, Drew Pardoll˛ and Arthur Machlenkin˜ . Compugenis presentingthisinformationas ofthedateofthepresentationand

  • Upload
    others

  • View
    0

  • Download
    0

Embed Size (px)

Citation preview

  • 1. Compugen Ltd, Holon Israel2. Bloomberg~Kimmel Ins�tute for Cancer Immunotherapy, Johns Hopkins University, Bal�more MD

    * These authors contributed equally

    COMPUTATIONAL DISCOVERY AND EXPERIMENTAL VALIDATION OF CGEN-15032 AS A NOVEL TARGET FOR CANCER IMMUNOTHERAPY Ofer Levy1*, Sudipto Ganguly2*, Ilan Vaknin1, Eran Ophir1, Einav Sa�on1, Inbal Barbiro1, Yosef Diken1, Liat Dassa1, Tal Friedman1, Zoya Alteber1, Gady Cojocaro1, Nir Rainy1, Yair Benita1, Benjamin Murter2, Xiaoyu Pan2, Debebe Theodros2, Rupashree Sen2, Ayelet Chajut1, Vered Daniel Carmi, Zurit Levine1, Yona Geffen1, Drew Pardoll2 and Arthur Machlenkin1 .

    Compugen is presenting this information as of the date of the presentation and expressly disclaims any duty to update the information contained in this presentation. This presentation contains scientific and commercial information from third-party sources, including data from studies conducted by others. Although Compugen believes that such information is reliable, we have not independently verified any of this information and we do not guarantee the accuracy or completeness of this information.

    CGEN-15032 GENE KO RESULTS IN DELAYED TUMOR GROWTH IN VIVO

    GENE STRUCTURE HOMOLOGY HIGHLIGHTS CGEN-15032 AS A NOVEL IMMUNE CHECKPOINT

    CGEN-15032 IS EXPRESSED IN THE TUMOR MICRO-ENVIRONMENT AND INHIBITS T CELL ACTIVATION

    COMPUGEN: FROM CODE TO CURE

    CGEN-15032 INHIBITS TUMOR INFILTRATING LYMPHOCYTE (TIL) ACTIVITY SIMILAR TO PDL1

    SUMMARY

    CGEN-15032 EXPRESSION AT PROTEIN LEVEL IS HIGHER IN NSCLC RELATIVE TO NORMAL LUNG TISSUES

    EXPRESSION OF CGEN-15032 IN HUMAN AND MOUSE DENDRITIC CELLS (DCs)

    DISCOVERY OF NOVEL IMMUNE CHECK-POINTS 15032 WAS DISCOVERED BY GENE STRUCTURE HOMOLOGY

    INTR

    ODU

    CTIO

    N

    An�body blockade of CTLA4 and PD-1 immune checkpoints emerged as an effec�ve treatment modality for cancer. However, most pa�ents do not achieve sustained benefit, sugges�ng a need for targe�ng of addi�onal immune checkpoints. Towards predic�on of novel immune checkpoints, we developed a set of computa�onal tools including gene structure alignment for the iden�fica�on of func�onal homologs for B7/CD28 genes in the absence of sequence similarity. This discovery pla�orm has been tested and validated extensively and has demonstrated its validity by iden�fying novel immune checkpoints such as TIGIT and PVRIG, which are currently in preclinical development by Compugen. This predic�ve pla�orm was employed to iden�fy an addi�onal immuno-modulatory target, designated CGEN-15032.

    CGEN-15032 is expressed on cancer cells and on the myeloid component of immune infiltrate within the tumor microenvironment. Several human and mouse in vitro experimental systems have demonstrated an immune-modulatory effect for CGEN-15032. Ectopically expressed CGEN-15032 dampened an�-melanoma ac�vity of tumor-infiltra�ng lymphocytes, derived from melanoma pa�ents. In line with the effect observed in human system, over expression of murine CGEN-15032 in ar�ficial an�gen-presen�ng cells resulted in reduced ac�vity of TCR-transgenic DO11.10 T cells. These func�onal data, in conjunc�on with the expression of 15032 on myeloid and tumor cells, suggest that 15032 is a ligand and part of a novel pathway that inhibits T cell func�on.

    For Some Immune Genes, Gene Structure is More Conserved Than Sequence.

    To study the immuno-modulatory func�on of CGEN-15032 and its role in an�-cancer immunity, we generated CGEN-15032 knock-out (KO) mice. MC38 tumors grew slower in CGEN-15032 KO rela�ve to wild-type mice (in average 47%, p