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Chemical Microscopy Studies of Chemical Microscopy Studies of Peat from the Arctic Coastal PlainPeat from the Arctic Coastal Plain
Thaw Lake Basin: Barrow, Alaska
Heidi Heidi BialkBialk GREF Presentation GREF Presentation June 2003 June 2003
qq Introduction IntroductionØ Background
qq Project Goals Project GoalsØ ObjectivesØ Hypotheses
qqq Experimental Methods Experimental Methods Experimental MethodsØ Sample Collection and Sample Preparation
qq Preliminary Results Preliminary ResultsØ Data Collection: XANES and MicroscopyØ Summary of Preliminary Results
qq Conclusions ConclusionsØ Future Directions
qq Acknowledgements Acknowledgements
OverviewOverview
Whale Bone: Barrow, Alaska
Background: Why the ArcticCoastal Plain?
q Soils of the tundra biome are estimated to contain 13%of the world soil C pool
qPotential impact of climate warming on carbonaccumulation in the arctic tundra has multiplescenarios.
qAn improved understanding of the chemical nature ofpeat is needed in order to better predict impacts ofclimate change.
Age Classification of BasinsAge Classification of Basins
Young Medium
Old Ancient
Arctophila fulva, Caliergon Eriophorum augustifolium
Carex aquatilus, Dichranum elongatum and Sphagnum Eriophorum vaginatum
Photos by Dr. Wendy Eisner
Background Cont’d: Landsat-7 Background Cont’d: Landsat-7 Imagery of the Coastal Plain Imagery of the Coastal Plain
http://k2.gissa.uc.edu/~weisner/thawpage_files/frame.htm
young
old
ancient
medium
Background Cont’dq There have been several studies on the
progression of events within the thaw lake cycle(Billings and Peterson., 1980; Eisner., 1998a; Eisner andPeterson., 1998b).
q CPMAS-NMR used as a tool to characterizewhole peat samples along with soluble extractsfrom the Arctic (Ping et al., 2001)
q Spectra do not reveal organic origins.q Our approach will be similar, focusing on whole
insoluble residues using synchrotron x-raybased methods that include microscopy.Øchemical imaging
ObjectivesObjectives
q Bridge a gap in the current understandingof peat mats from the arctic coastal plainØQuantify fresh source material in peat mats and
assess the extent of decomposition
ØEstimate the amount of chemically identifiablecell wall material of the following origin:ü vascular plants through a chemical mapping based on lignin
ümoss, fungal, and microbial cell wall material
Dominant Vegetation
Permafrost
Active LayerPeat Core
Fresh Material ?
vascular avascular
-Fungi-Mosses-Microbial cell walls
Main Hypothesesq Chemical imaging will distinguish detritus
of a vascular origin vs. detritus of anavascular origin via a chemical mapping oflignin. (Kogel-Knaber., 2002)
q There are chemical characteristics of fungaland bacterial cell wall material that will allowfurther distinction of detritus origin.
q Chemical imaging will reflect an increase in thedegree of decomposition of detritus with depth.(Dai et al., 2001)
Dominant Vegetation
Permafrost
Active Layer Peat Core
Fresh Material ?
vascular avascular
-Fungi-Mosses-Microbial cell walls
SynchrotronX-ray
Analysis
Bulk XANES Mark II Grasshopper Port 103 Averages over an entire sample
Chemical MicroscopyMephistoSelective Electronic Imaging
Sample Collection: Vegetation
Eriophorum vaginatum(graminoid)
ancientRI Basin
Carex aquatilus (graminoid),Dichranum elongatum andSphagnum (mosses)
oldTC Basin
Eriophorum augustifolum(graminoid)
mediumGolf Course Basin
Arctophila fulva (graminoid),Caliergon (moss)
youngFootprint Lake Basin
Dominant Vegetation (other species present)
Age Lake Site
Table 1. Parent Vegetation from drained thaw lake basins in Barrow, Alaska, at 71 degrees N latitude
Sample Collection Cont’d
qMicrobial Cell WallIsolation (Dufrene et al.,1997; Dengis et al., 1995)
Ø Bacteria: Archaea
q Peat Cores
http://k2.gissa.uc.edu/~weisner/thawpage_files/frame.htm
Sample Preparation
q Soft X-ray Analysis in Bulk Mode (Port 103)Ø Samples ground and embedded into indium foil
Ø Coated with a 7 angstrom Pt-Pd alloy film
Ø Eliminates charging
q Soft X-ray Analysis in Microscopic ModeØ Samples fixed in a Polybed-812 & Spurr’s carbon based
resin
Ø Sectioned to 8 micrometers to minimize sample charging
Ø Smooth sample required for quality imaging
280 285 290 295 300 305
Energy, eV
Inte
nsi
ty
Aspen Lignin Cellulose
Bulk Data Collection: XANESBulk Data Collection: XANESSpectra of Cellulose and LigninSpectra of Cellulose and Lignin
Alaskan Peat
280 285 290 295 300 305 310 315 320 325 330
Energy
Data Collection: XANES Spectrum of Data Collection: XANES Spectrum of Arctic Peat at the Carbon K-edge Arctic Peat at the Carbon K-edge
Carbon K-edge (Eriophorum Augustifolum)
280 285 290 295 300 305 310 315 320
Energy (eV)
Inte
nsity
Data Collection: XANES SpectrumData Collection: XANES Spectrumof of EriophorumEriophorum augustifolumaugustifolum at theat the Carbon K-edgeCarbon K-edge
280 285 290 295 300 305 310 315 320 325 330 80 285 290 295 300 305 310 315 32
Inte
nsit
y
Key Points from XANES Analysis Key Points from XANES Analysis
Energy (eV) Energy (eV)
Inte
nsi
ty
Inte
nsi
ty
Alaskan Peat Eriophorum Augustifolium
Data Collection: Soft X-ray Data Collection: Soft X-ray Microscopy of Isolated Peat Region Microscopy of Isolated Peat Region
at the Carbon K-edgeat the Carbon K-edge
- Peat- Resin
Summary of Preliminary Resultsq Bulk soft x-ray analysis at the carbon K-
edge distinguishes between fresh plantmaterial and peat.q Chemical microscopy is feasible due to a
chemical contrast between embeddingresin and peat.q Changes in methodology have improved
data quality.q Chemical microscopy will provide insight
into the nature of peat originating from thearctic coastal plain.
Future Directions
q Complete bulk spectra of parentvegetation
q Collect bulk and microscopic imagesat various depth intervals along apeat core
q Utilize IR microscopy techniques
q Analyze and interpret spectra
Arctic Ocean
AcknowledgementsAcknowledgements
CollaboratorsCollaborators::-Dr. Bockheim (UW-Madison)-Dr. DeStassio (SRC)-Dr. Xiaoyan Dai (post-doc)-Brad Frazier (SRC)
Technical Support:Technical Support: -Dr. Kim Peterson (UA- Fairbanks) -Randy Massey (UW-Madison) -Dr. Russ Spears (UW-Madison) -Dan Wallace (SRC) -Adam Hitchcock (SRC)
FundingFunding::- Global Research Environmental Fellowship (GREF)
Other: Other: --Barrow Arctic Consortium Barrow Arctic Consortium (BASC)(BASC)
Sample Collection
qPollen
Øproxy for vegetation used inpaleoecological research
ØEriophorum scheuzeri, Arctophila fulva,Carex aquatilus
Alaskan Peat
280 285 290 295 300 305 310 315 320 325 330
Energy
Data Collection: XANES Spectrum of Data Collection: XANES Spectrum of Arctic Peat at the Carbon K-edge Arctic Peat at the Carbon K-edge
Fresh Material?
Data Collection: Soft X-rayData Collection: Soft X-ray Microscopy of Isolated Peat Region Microscopy of Isolated Peat Region at the Nitrogen K-edge at the Nitrogen K-edge
Double Normalization
Intensity = {(Sample Unknown TEY)(Nickel Mesh)} {(Silicon Chip TEY)(Nickel Mesh)}
q Fungal Cell Walls
ØChitin
ØCellulose
ØPolysaccharides
ØAmino sugars
q Bacterial Cell Walls
Ø Lipids
Ø Lipopolysaccharides& polysaccharides
ØPeptidoglycan
ØAlkyl macromolecules
ØAmino sugars
üN-acetyl muramicacid
Potential Pitfalls
q Sample Collection
Ødecomposition may not necessarily increasewith depth due to fine root penetration of thepeat mat and cryoturbation
q Data Analysis
Ødifficulty in obtaining quality data, samplecharging may limit confidence in ourquantification
Other Methods in PeatCharacterization
q Amino sugar analysis (bacterial vs fungalcell wall contributions)
q Isomer analysis with GC/MS
q Sulfur XANES – distinguish bacterial cellwall material?
q Lignin extraction in a mix of humicextracts
Expected Results
q Relationship between amount of freshmaterial vs depth/age
Ø depth and age may not be linear
Ø fresh material vs time may be moreappropriate
Research Timetable
- Complete thesispublications anddefend thesis
-Chem. Microscopy ofPeat
- Pollen Isolation andAnalysis
-Write and submitpublication on thosefindings
- Continued analysis ofcore peat sample
-Cell Wall Isolation
- Soft X-rayspectroscopy ofparent vegetation andcell wall material
- Write NSF proposal
- Write and submitpublication on initialresults
2005 2004 2003