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CHAPTER 2 The Chemical Context of Life

CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds. Organisms are composed of matter - anything that takes up space

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Page 1: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

CHAPTER 2The Chemical Context of Life

Page 2: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.1 Matter is made of elements and compounds.

Organisms are composed of matter - anything that takes up space or has mass

An element is a substance that cannot be broken down by chemical reactions.

Fe, Ca, K

A compound is a substance consisting of two or more elements in a fixed ratio.

NaCl, HCl, H2O2 , C6H12O6

Page 3: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Matter - elements and compounds

Life requires about 25 elements C, O, H, and N make up 96% of all living

matter S, P, Ca, and K make up the remaining 4%

Trace elements are those that are required, but only small amounts. N and I

Deficits may have severe consequences

Page 4: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Nitrogen deficiency - growth of plant

Iodine deficiency – enlargement of thyroid gland

Page 5: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Table 2.1

Page 6: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.2 – An element’s properties depend on its structure

An atom is the smallest unit of matter that still retains the properties of an element. Similar to a cell being the basic unit of life

Subatomic particles help us to better understand atoms. Protons (p+) Neutrons (n0 - no charge) Electrons (e-)

Page 7: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.2 Properties and Structure

Atomic number is the # of p+

In neutral (uncharged atom) also equals e-

Mass number (Atomic mass) = p+ + n0

Isotopes are the different forms of an element. # of n0 varies in the nucleus Often used as radioactive markers/tracers for

testsYou should be able to identify and determine mass

and atomic number for elements on the p-table.

Page 8: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.2 – Properties and Structure

The e- of an atom have different energy – ability to do work.

e- have stored (potential)energy because of their position in relation to the nucleus. 1st shell (closest to nucleus) least energy 2nd shell more energy than 1st, etc.

Outer most shell contains valance e-

identified by group number (groups ↑↓) # of unpaired e- indicates reactivity of element

Page 9: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Third shell (highest energylevel)

Second shell (higherenergy level)

Energyabsorbed

First shell (lowest energylevel)

Atomicnucleus

Energylost

e- Energy Shells

Page 10: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Valence e- of common elements

Hydrogen

1H

Lithium

3LiBeryllium

4BeBoron

5BCarbon

6CNitrogen

7NOxygen

8O

Fluorine

9FNeon

10Ne

Helium

2HeAtomic number

Element symbol

Electron-distributiondiagram

Atomic mass

2He

4.00Firstshell

Secondshell

Thirdshell

Sodium

11NaMagnesium

12Mg

Aluminum

13AlSilicon

14SiPhosphorus

15PSulfur

16S

Chlorine

17ClArgon

18Ar

Page 11: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.3 Chemical Bonding

Atoms will bond with other atoms to gain stability. Stable when valence shell is full.

Covalent bonds Ionic bonds

Page 12: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Chemical Bonding

Covalent bonds are formed when 2 atoms share a pair or pairs of valence e-. Hydrogen (H) atoms will share their e-.

They become H-H. H2O – H covalently bonded to O

More on this in Ch.3

Page 13: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.3

Page 14: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.3 – Chemical Bonding

Electronegativity is a measure of an atoms ability to the attract the e- of another atom to form a covalent bond. Sharing of e- results in a strong bond. Two types of covalent bonds

Nonpolar Polar

Page 15: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Covalent bonding…

Nonpolar when the e- are shared equally results in no charge on either atom

involved

Polar when one atom is bonded to a more electronegative atom results in charge (+/-) on one atom

Page 16: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

+ +

H H

O

H2O

Polarity of H2O

Page 17: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.3 Chemical Bonding

Ionic bonds occur when two atoms are so unequal in their attraction for e- that one atom will strip the e- from its partner. These bonds are not as strong as covalent

bonds.

An ion is a charged atom; Cations have a “+” charge, ca+ion Anions have a “–” charge, a negative ion

Compounds formed by ionic bonds are salts.

Page 18: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Ionic Bonds

Na Cl Na Cl

NaSodium atom Chlorine atom

Cl Na+

Sodium ion(a cation)

Cl–Chloride ion

(an anion)

Sodium chloride (NaCl)

Page 19: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.3 Chemical Bonding

The advantage of weak bonding is that the contact/bond between atoms can be brief.

Hydrogen bonds occur when H is covalently bonded to an electronegative atom and attracted to another electronegative atom. Water and ammonia Water and water Bases in DNA

Page 20: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Hydrogen Bonding +

+

+

+

+

Water (H2O)

Ammonia (NH3)

Hydrogen bond

Page 21: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Hydrogen bonding…

Page 22: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Hydrogen bonding…

Page 23: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Shape and Function

Molecules have distinct shape and size Related to atoms and bonds contained

within As mentioned before shape/structure is

directly related to function Determines how molecules interact and

respond to each other Opiates and endorphins – chemicals with

similar shapes interact with similar receptors on the brain, causing similar effects

Page 24: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.4 – Reactions make or break bonds.

Chemical reactions involve breaking and making new chemical bonds. Start with reactants. End with products.

Coefficient and subscript tells you how much of each

What is the reverse reaction of photosynthesis?

Page 25: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

Chemical Reactions

Page 26: CHAPTER 2 The Chemical Context of Life. 2.1 Matter is made of elements and compounds.  Organisms are composed of matter - anything that takes up space

2.4 – Reactions make or break bonds.

Chemical equilibrium occurs when the forward and reverse reactions occur at the same rate. Concentrations have stabilized Concentrations are NOT equal each other