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Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel, St. Louis Community College

Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

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Page 1: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Chapter 2: Chemistry

Raw materials and fuel for our bodies

Lectures by Mark Manteuffel, St. Louis Community College

Page 2: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

2.1–2.3

Atoms form

molecules through

bonding.

Page 3: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

2.1 Everything is made of atoms.

An element is a substance that cannot be broken down chemically into any other substances.

An atom is a bit of matter that cannot be subdivided any further without losing its essential properties.

Page 4: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Atomic Structure:The nucleus, protons, and neutrons

Page 5: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Atomic Structure: Electrons

Page 6: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Atomic Numbers

Insert new figure 2.3

Page 7: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Isotopes

insert new fig 2.4

Page 8: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Radioactive Atoms

A few atomic nuclei are not stable and break

down spontaneously.

These atoms are radioactive.

They release, at a constant rate, a tiny, high-

speed particle carrying a lot of energy.

Page 9: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

2.2 An atom’s electrons determine how (and whether) the atom will bond with other atoms.

Electron shells

Page 10: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Electron Shells

Insert new fig 2-6

Page 11: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

The Versatility of Carbon

Insert fig 2-7

Page 12: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Ions

Insert new fig 2-8

Page 13: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

2.3 Atoms can bond together to form molecules or compounds.

Page 14: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Products of bonding!

Molecules

Page 15: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,
Page 16: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Covalent Bonds

Insert fig 2-9 to right side of slide

Page 17: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Ions and Ionic Bonds

Insert fig 2-10

Page 18: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Hydrogen Bonds

Insert fig 2-11

Page 19: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Insert fig 2-12

Page 20: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

2.4–2.6

Water has

features that

enable it to

support all life.

Page 21: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

2.4 Hydrogen bonds make water cohesive.

Insert fig 2-13

Page 22: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,
Page 23: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Take-home message 2.4

Water molecules easily form hydrogen bonds, giving water great cohesiveness.

Page 24: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

2.5 Water has unusual properties that make it critical to life.

Cohesion

Large heat capacity

Low density as a solid

Good solvent

Page 25: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Cohesion

Page 26: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Heat Capacity

Page 27: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Why do coastal areas have milder, less variable climates than inland areas?

Page 28: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Low Density as a Solid

Page 29: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,
Page 30: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Why don’t oceans freeze as easily as fresh water lakes?

Page 31: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

2.6 Living systems are highly sensitive to acidic and basic conditions.

Page 32: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Hydrogen Ionsand Hydroxide Ions

Ionized Hydroxide Molecule

OH -

Non-Ionized Water Molecule

H2OO O

H H H

Page 33: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

pH Scale

The amount of H+ in a solution is a measure of its acidity and is called pH.

Acids

Bases

Page 34: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,
Page 35: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

H+ Ions and Acids

H+ very reactive

Acids can donate H+ to other chemicals

Stomach acids

Page 36: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Bases

Low H+

High OH

Antacids

Baking soda, seltzer, milk of magnesia

Page 37: Chapter 2: Chemistry - HK Highmwalston.rsd17.org/uploads/5/7/5/2/57520997/bio_honors_biochem... · Chapter 2: Chemistry Raw materials and fuel for our bodies Lectures by Mark Manteuffel,

Blood pH

Buffers

• can quickly absorb excess H+ ions to keep a solution from becoming too acidic

• can quickly release H+ ions to counteract any increases in OHconcentration