Cellular Respira,on: Harvesng Chemical Energy is to make ATP

1

•  Chapter9

CellularRespira,on:Harves,ngChemical

Energy

2006-2007

What’s the point?

The point is to make ATP!

ATP

PrinciplesofEnergyHarvest

•  Catabolicpathway√Fermenta<on√CellularRespira<on C6H12O6+6O2--->6CO2+6H2O+E(ATP+heat)

Harves<ngstoredenergy•  Glucoseisthemodel– catabolismofglucosetoproduceATP

C6H12O6 6O2 ATP 6H2O 6CO2 → + + +

CO2 + H2O + heat fuel (carbohydrates)

COMBUSTION = making a lot of heat energy by burning fuels in one step

RESPIRATION = making ATP (& some heat) by burning fuels in many small steps

CO2 + H2O + ATP (+ heat)

ATP glucose

glucose + oxygen → energy + water + carbon dioxide

resp

irat

ion

O2 O2

+ heat

enzymes ATP

Howdoweharvestenergyfromfuels?•  Digestlargemoleculesintosmallerones– breakbonds&moveelectronsfromonemoleculetoanother•  aselectronsmovethey“carryenergy”withthem•  thatenergyisstoredinanotherbond,releasedasheatorharvestedtomakeATP

e-

+ + e-

+ – loses e- gains e- oxidized reduced

oxidation reduction

redox

e-

Howdowemoveelectronsinbiology?•  Movingelectronsinlivingsystems– electronscannotmovealoneincells•  electronsmoveaspartofHatom•  moveH=moveelectrons

p e

+

H

+ H

+ – loses e- gains e- oxidized reduced

oxidation reduction

C6H12O6 6O2 6CO2 6H2O ATP → + + +

oxidation

reduction H e-

2

Couplingoxida<on&reduc<on•  REDOXreac<onsinrespira<on

–  releaseenergyasbreakdownorganicmolecules•  breakC-Cbonds•  stripoffelectronsfromC-HbondsbyremovingHatoms–  C6H12O6→CO2=thefuelhasbeenoxidized

•  electronsaYractedtomoreelectronega<veatoms

–  inbiology,themostelectronega<veatom?–  O2→H2O=oxygenhasbeenreduced

–  coupleREDOXreac<ons&usethereleasedenergytosynthesizeATP

C6H12O6 6O2 6CO2 6H2O ATP → + + +

oxidation

reduction

O2

Oxida<on&reduc<on•  Oxida<on– addingO–  removingH–  lossofelectrons–  releasesenergy– exergonic

•  Reduc<on–  removingO– addingH– gainofelectrons– storesenergy– endergonic

C6H12O6 6O2 6CO2 6H2O ATP → + + +

oxidation

reduction

Movingelectronsinrespira<on•  Electroncarriersmoveelectronsby

shuYlingHatomsaround–  NAD+→NADH(reduced)–  FAD+2→FADH2(reduced)

+ H reduction

oxidation

P O–

O–

O

–O

P O–

O–

O

–O

C C

O

NH2

N+

H

adenine

ribose sugar

phosphates

NAD+ nicotinamide Vitamin B3 niacin

P O–

O–

O

–O

P O–

O–

O

–O

C C

O

NH2

N+

H NADH

carries electrons as a reduced molecule

reducing power!

How efficient! Build once, use many ways

H

like $$ in the bank

Oxidizingagentinrespira<on

•  NAD+(nico<namideadeninedinucleo<de)

•  Removeselectronsfromfood(seriesofreac<ons)

•  NAD�+isreducedtoNADH

•  Enzymeac<on:dehydrogenase

•  Oxygenistheeventuale-acceptor

Electrontransportchains

•  Electroncarriermolecules(membraneproteins)

•  ShuYleselectronsthatreleaseenergyusedtomakeATP

•  Sequenceofreac<onsthatpreventsenergyreleasein1explosivestep

•  Electronroute: food--->NADH--->

electrontransportchain--->oxygen

Cellularrespira<on:overview•  (anaerobic)•  1.Glycolysis:cytosol;degrades

glucoseintopyruvate•  (aerobic)•  Pyruvateoxida<on•  2.Kreb’sCycle:mitochondrial

matrix;pyruvateintocarbondioxide

•  3.ElectronTransportChain:innermembraneofmitochondrion;electronspassedtooxygen

3

2006-2007

What’s the point?


ATP

Glycolysis•  Breakingdownglucose

–  “glyco–lysis”(splifngsugar)

–  ancientpathwaywhichharvestsenergy

•  whereenergytransferfirstevolved•  transferenergyfromorganicmoleculestoATP•  s<llisstar<ngpointforALLcellularrespira<on

–  butit’sinefficient•  generateonly2ATPforevery1glucose

–  occursincytosol

glucose → → → → → pyruvate 2x 6C 3C

In the cytosol? Why does that make evolutionary sense?

That’s not enough ATP for me!

Evolu<onaryperspec<ve•  Prokaryotes–  firstcellshadnoorganelles

•  Anaerobicatmosphere–  lifeonEarthfirstevolvedwithoutfreeoxygen(O2)inatmosphere

–  energyhadtobecapturedfromorganicmoleculesinabsenceofO2

•  Prokaryotesthatevolvedglycolysisareancestorsofallmodernlife–  ALLcellss<llu<lizeglycolysis

You mean we’re related? Do I have to invite them over for the holidays?

Enzymes of glycolysis are “well-conserved”

Overview10reac<ons– convertglucose(6C)to2pyruvate(3C)

– produces:4ATP&2NADH

– consumes:2ATP

– netyield:2ATP&2NADH

glucose C-C-C-C-C-C

fructose-1,6bP P-C-C-C-C-C-C-P

DHAP P-C-C-C

G3P C-C-C-P

pyruvate C-C-C

DHAP = dihydroxyacetone phosphate G3P = glyceraldehyde-3-phosphate

ATP 2

ADP 2

ATP 4

ADP 4

NAD+ 2

2Pi

enzyme

enzyme

enzyme enzyme

enzyme

enzyme

enzyme

enzyme

2Pi 2H

2

Glycolysissummaryendergonic invest some ATP

exergonic harvest a little ATP & a little NADH

net yield ü 2 ATP ü 2 NADH

4 ATP

ENERGY INVESTMENT

ENERGY PAYOFF G3P C-C-C-P

NET YIELD

like $$ in the bank

-2 ATP

Substrate-levelPhosphoryla<on•  Inthelaststepsofglycolysis,wheredidtheP

comefromtomakeATP?–  thesugarsubstrate(PEP)

P is transferred from PEP to ADP ü kinase enzyme ü ADP → ATP

I get it! The Pi came directly from the substrate!

H2O 9

10

Phosphoenolpyruvate (PEP)


Pyruvate Pyruvate

enolase

pyruvate kinase ADP

ATP

ADP

ATP

H2O

CH3

O-

O

C

O-

C

C

C

P

O O

O

CH2

ATP

4

Energyaccoun<ngofglycolysis

•  Netgain=2ATP+2NADH–  someenergyinvestment(-2ATP)–  smallenergyreturn(4ATP+2NADH)

•  16Csugar→23Csugars

2 ATP 2 ADP

4 ADP

glucose → → → → → pyruvate

2x 6C 3C

All that work! And that’s all I get?

ATP 4

2 NAD+ 2 But glucose has so much more to give!

Isthatallthereis?•  Notalotofenergy…–  for1billonyears+thisishowlifeonEarthsurvived•  noO2=slowgrowth,slowreproduc<on•  onlyharvest3.5%ofenergystoredinglucose– morecarbonstostripoff=moreenergytoharvest

Hard way to make a living!

O2

O2

O2

O2

O2

glucose → → → → pyruvate 6C 2x 3C

7

8

H2O 9

10

ADP

ATP

3-Phosphoglycerate (3PG)






Pyruvate Pyruvate

ADP

ATP

ADP

ATP

ADP

ATP

H2O

NAD+

NADH

NAD+

NADH

Pi Pi 6

Glycolysis

glucose + 2ADP + 2Pi + 2 NAD+ → 2 pyruvate + 2ATP + 2NADH

Butcan’tstopthere!

•  GoingtorunoutofNAD+–  withoutregenera<ngNAD+,energyproduc<onwouldstop!

–  anothermoleculemustacceptHfromNADH•  soNAD+isfreedupforanotherround

Pi NAD+

G3P

1,3-BPG 1,3-BPG NADH

NAD+

NADH Pi

DHAP

raw materials → products

NADH

pyruvate

acetyl-CoA

lactate

ethanol

NAD+

NAD+

NADH

NAD+

NADH

CO2

acetaldehyde

H2O

Krebs cycle

O2

lactic acid fermentation

with oxygen aerobic respiration

without oxygen anaerobic respiration “fermentation”

HowisNADHrecycledtoNAD+?AnothermoleculemustacceptHfromNADH

recycle NADH

which path you use depends on who you are…

alcohol fermentation

Fermenta<on(anaerobic)•  Bacteria,yeast

1C 3C 2C

pyruvate → ethanol + CO2

§ Animals, some fungi

pyruvate → lactic acid 3C 3C

§  beer, wine, bread

§  cheese, anaerobic exercise (no O2)

NADH NAD+

NADH NAD+

back to glycolysis→→


recycle NADH

AlcoholFermenta<on

1C 3C 2C

pyruvate → ethanol + CO2

NADH NAD+

Count the carbons!

§ Dead end process § at ~12%

ethanol, kills yeast

§ can’t reverse the reaction

bacteria yeast


5

recycle NADH

§ Reversible process § once O2 is

available, lactate is converted back to pyruvate by the liver

Lac<cAcidFermenta<onpyruvate → lactic acid

3C 3C NADH NAD+

→

Count the carbons!

O2

animals some fungi


PyruvateisabranchingpointPyruvate

O2 O2

mitochondria Krebs cycle aerobic respiration

fermentation anaerobic respiration

pyruvate → → → → → → CO2

Glycolysisisonlythestart•  Glycolysis

•  Pyruvatehasmoreenergytoyield–  3moreCtostripoff(tooxidize)–  ifO2isavailable,pyruvateentersmitochondria–  enzymesofKrebscyclecompletethefulloxida<onofsugartoCO2

2x 6C 3C glucose → → → → → pyruvate

3C 1C

pyruvate → → → acetyl CoA + CO2

Oxida<onofpyruvate•  Pyruvateentersmitochondrialmatrix

–  3stepoxida<onprocess–  releases2CO2(count the carbons!)–  reduces2NAD→2NADH(movese-)–  produces2acetylCoA

•  AcetylCoAentersKrebscycle

NAD

3C 2C 1C [ 2x ] Where does the CO2 go? Exhale!

Krebscycle•  akaCitricAcidCycle–  inmitochondrialmatrix– 8steppathway•  eachcatalyzedbyspecificenzyme•  step-wisecatabolismof6Ccitratemolecule

•  Evolvedlaterthanglycolysis– doesthatmakeevolu<onarysense?•  bacteria→3.5billionyearsago(glycolysis)•  freeO2→2.7billionyearsago(photosynthesis)•  eukaryotes→1.5billionyearsago(aerobicrespira<on=organelles→mitochondria)

1937 | 1953

Hans Krebs 1900-1981

4C

6C

4C

4C

4C

2C

6C

5C

4C

CO2

CO2

citrate

acetyl CoA

Count the carbons! 3C pyruvate

x2

oxidation of sugars

This happens twice for each glucose molecule

6

4C

6C

4C

4C

4C

2C

6C

5C

4C

CO2

CO2

citrate

acetyl CoA

Count the electron carriers! 3C pyruvate

reduction of electron carriers

This happens twice for each glucose molecule x2

CO2

NADH

NADH

NADH NADH

FADH2 ATP

So we fully oxidized glucose C6H12O6

↓ CO2 & ended up with 4 ATP!

Whassup?

What’s the point?

§ Krebs cycle produces large quantities of electron carriers u NADH u FADH2 u go to Electron

Transport Chain!

Electron Carriers = Hydrogen Carriers

What’s so important about electron carriers?

H+

H+ H+

H+

H+ H+ H+ H+

H+

ATP ADP + Pi

Energyaccoun<ngofKrebscycle

Netgain = 2ATP = 8NADH+2FADH2

1 ADP 1 ATP ATP

2x

4 NAD + 1 FAD 4 NADH + 1 FADH2

pyruvate → → → → → → → → → CO2 3C 3x 1C

ValueofKrebscycle?•  Iftheyieldisonly2ATPthenhowwastheKrebscycle

anadapta<on?–  valueofNADH&FADH2

•  electroncarriers&Hcarriers–  reducedmoleculesmoveelectrons–  reducedmoleculesmoveH+ions

•  tobeusedintheElectronTransportChain

like $$ in the bank

Kreb’sCycle:review•  Ifmolecularoxygenispresent…….•  Eachpyruvateisconvertedinto

acetylCoA(beginw/2): CO2isreleased; NAD

+--->NADH; coenzymeA(fromBvitamin), makesmoleculeveryreac<ve

•  Fromthispoint,eachturn2Catomsenter(pyruvate)and2exit(carbondioxide)

•  Oxaloacetateisregenerated(the“cycle”)

•  Foreachpyruvatethatenters: 3NAD+reducedtoNADH;1FAD+reducedtoFADH2;1ATPmolecule

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ATPaccoun<ngsofar…•  Glycolysis→2ATP•  Kreb’scycle→2ATP•  Lifetakesalotofenergytorun,needtoextractmoreenergythan4ATP!

A working muscle recycles over 10 million ATPs per second

There’s got to be a better way!

I need a lot more ATP!

ThereisabeYerway!•  ElectronTransportChain– seriesofproteinsbuiltintoinnermitochondrialmembrane•  alongcristae•  transportproteins&enzymes

–  transportofelectronsdownETClinkedtopumpingofH+tocreateH+gradient

– yields~34-36ATPfrom1glucose!– onlyinpresenceofO2(aerobicrespira<on)

O2 That sounds more like it!

G3P Glycolysis Krebs cycle

8 NADH 2 FADH2

RemembertheElectronCarriers?

2 NADH

Time to break open the piggybank!

glucose

ElectronTransportChain

intermembrane space

mitochondrial matrix

inner mitochondrial membrane

NAD+

Q

C

NADH H2O

H+

e–

2H+ + O2

H+ H+

e– FADH2

1 2

NADH dehydrogenase

cytochrome bc complex

cytochrome c oxidase complex

FAD

e–

H

H → e- + H+

NADH → NAD+ + H

H

p e

Building proton gradient!

What powers the proton (H+) pumps?…

ElectronTransportChain

Intermembrane space

Mitochondrial matrix

Q

C

NADH dehydrogenase



Inner mitochondrial membrane

H+

H+ H+

H+

H+ H+

H+ H+ H+

ATP NAD+

Q C

NADH H2O

H+

e–

2H+ + O2

H+ H+

e– FADH2 1 2

NADH dehydrogenase



FAD

e–

StrippingHfromElectronCarriers•  Electroncarrierspasselectrons&H+toETC–  HcleavedoffNADH&FADH2–  electronsstrippedfromHatoms→H+(protons)

•  electronspassedfromoneelectroncarriertonextinmitochondrialmembrane(ETC)

•  flowingelectrons=energytodowork–  transportproteinsinmembranepumpH+(protons)acrossinnermembranetointermembranespace

ADP + Pi

TA-DA!! Moving electrons do the work!

H+ H+ H+

8

But what “pulls” the electrons down the ETC?

electrons flow downhill to O2 oxidative phosphorylation

O2 H2O

Electronsflowdownhill•  Electronsmoveinstepsfromcarriertocarrierdownhilltooxygen–  eachcarriermoreelectronega<ve–  controlledoxida<on–  controlledreleaseofenergy

make ATP instead of fire!

H+

ADP + Pi

H+ H+

H+

H+ H+

H+ H+ H+ Wedidit!

ATP

•  SetupaH+gradient•  AllowtheprotonstoflowthroughATPsynthase

•  SynthesizesATP

ADP+Pi→ATP

Are we there yet?

“proton-motive” force

•  Thediffusionofionsacrossamembrane–  buildupofprotongradientjustsoH+couldflowthroughATPsynthaseenzymetobuildATP

Chemiosmosis

Chemiosmosis links the Electron Transport Chain to ATP synthesis

So that’s the point!

PeterMitchell•  Proposedchemiosmo<chypothesis–  revolu<onaryideaatthe<me

1961 | 1978

1920-1992

proton motive force

H+

H+

O2 +

Q C

ATP

Pyruvate from cytoplasm

Electron transport system

ATP synthase

H2O

CO2

Krebs cycle

Intermembrane space Inner

mitochondrial membrane

1. Electrons are harvested and carried to the transport system.

2. Electrons provide energy to pump protons across the membrane. 3. Oxygen joins

with protons to form water. 2H+

NADH

NADH

Acetyl-CoA

FADH2

ATP

4. Protons diffuse back in down their concentration gradient, driving the synthesis of ATP.

Mitochondrial matrix

2 1

H+

H+

O2

H+

e-

e- e-

e-

ATP

9

§ ETC backs up u nothing to pull electrons down

chain u NADH & FADH2 can’t unload H

§ ATP production ceases §  cells run out of energy §  and you die!

Takingitbeyond…•  WhatisthefinalelectronacceptorinElectronTransportChain?

O2 § So what happens if O2 unavailable?

2006-2007

What’s the point?


ATP

Review:CellularRespira<on

•  Glycolysis: 2ATP(substrate-levelphosphoryla<on)

•  Kreb’sCycle: 2ATP(substrate-levelphosphoryla<on)

•  Electrontransport&oxida<vephosphoryla<on: 2NADH(glycolysis)=6ATP2NADH(acetylCoA)=6ATP6NADH(Kreb’s)=18ATP2FADH2(Kreb’s)=4ATP

•  38TOTALATP/glucose

2006-2007

Cellular Respiration Other Metabolites & Control of Respiration

Beyondglucose:Othercarbohydrates•  Glycolysisacceptsawiderangeofcarbohydratesfuels

polysaccharides → → → glucose hydrolysis

other 6C sugars → → → glucose modified

§  ex. starch, glycogen

§  ex. galactose, fructose

N H

H

C—OH

|| O H

| —C— |

R

Beyondglucose:Proteins

amino group = waste product excreted as ammonia, urea, or uric acid

N H

H

C—OH

|| O H

| —C— |

R waste glycolysis

Krebs cycle

proteins → → → → → amino acids hydrolysis

2C sugar = carbon skeleton = enters glycolysis or Krebs cycle at different stages

10

fatty acids → 2C acetyl → acetyl → Krebs groups coA cycle

Beyondglucose:Fats

3C glycerol

enters glycolysis as G3P

enter Krebs cycle as acetyl CoA

2C fatty acids

fats → → → → → glycerol + fatty acids hydrolysis

glycerol (3C) → → G3P → → glycolysis

•  Coordina<onofchemicalprocessesacrosswholeorganism– diges<on•  catabolismwhenorganismneedsenergyorneedsrawmaterials

–  synthesis•  anabolismwhenorganismhasenoughenergy&asupplyofrawmaterials

– byregula<ngenzymes•  feedbackmechanisms•  rawmaterialss<mulateproduc<on•  productsinhibitfurtherproduc<on

Metabolism

CO2

2006-2007

ControlofRespira<on

FeedbackControl

FeedbackInhibi<on•  Regula<on&coordina<onofproduc<on– finalproductisinhibitorofearlierstep•  allostericinhibitorofearlierenzyme

– nounnecessaryaccumula<onofproduct– produc<onisself-limi<ng

A → B → C → D → E → F → G

allosteric inhibitor of enzyme 1

enzyme 1

→

enzyme 2

→

enzyme 3

→

enzyme 4

→

enzyme 5

→

enzyme 6

→

X

Respondtocell’sneeds

Why is this regulation important? Balancing act: availability of raw materials vs. energy demands vs. synthesis

•  Keypointofcontrol– phosphofructokinase

•  allostericregula<onofenzyme–  whyhere?“can’tturnback”stepbeforesplifngglucose

•  AMP&ADPs<mulate•  ATPinhibits•  citrateinhibits

AMetaboliceconomy•  Basicprinciplesofsupply&demandregulatemetabolic

economy–  balancethesupplyofrawmaterialswiththeproductsproduced

–  thesemoleculesbecomefeedbackregulators•  theycontrolenzymesatstrategicpointsinglycolysis&Krebscycle–  levelsofAMP,ADP,ATP

»  regula<onbyfinalproducts&rawmaterials–  levelsofintermediatescompoundsinpathways

»  regula<onofearlierstepsinpathways–  levelsofotherbiomoleculesinbody

»  regulatesrateofsiphoningofftosynthesispathways

11

AMetaboliceconomy•  Basicprinciplesofsupply&demandregulatemetabolic

economy–  balancethesupplyofrawmaterialswiththeproductsproduced

–  thesemoleculesbecomefeedbackregulators•  theycontrolenzymesatstrategicpointsinglycolysis&Krebscycle–  levelsofAMP,ADP,ATP

»  regula<onbyfinalproducts&rawmaterials–  levelsofintermediatescompoundsinpathways

»  regula<onofearlierstepsinpathways–  levelsofotherbiomoleculesinbody

»  regulatesrateofsiphoningofftosynthesispathways2006-2007

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Cellular Respira,on: Harvesng Chemical Energy is to make ATP