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Catalytic DNA-Based Biosensors Catalytic DNA-Based Biosensors for Effective Detection of Lead for Effective Detection of Lead
IonsIons
September 28 , 2009
Bishnu Regmi
Warner Research Group Louisiana State University
Baton Rouge, LA
Outline
• Objective• Articles• Background• Current Analytical Methods• DNAzyme-Based Methods
Colorimetric Method Fluorometric Method
• Comparison• Critique• Acknowledgement
Objective
To develop a highly sensitive, selective, and more practical method for routine analysis of lead content in environmental and biological materials.
• Objective
• Articles
• Background
• Current Analytical Methods
• DNAzyme-Based Methods
Colorimetric Method
Fluorometric Method
• Comparison
• Critique
• Acknowledgement
Articles
Label-Free Colorimetric Detection of Lead Ions with a Nanomolar Detection Limit and Tunable Dynamic Range by using Gold Nanoparticles and DNAzymeZidong Wang, Jung Heon Lee, and Yi Lu*
Adv. Mater. 2008, 20, 3263-3267
Engineering a Unimolecular DNA-Catalytic Probe for Single Lead Ion MonitoringHui Wang, Youngmi Kim, Haipeng Liu, Zhi Zhu, Suwussa Bamrungsap, and Weihong Tan*
J. Am. Chem. Soc. 2009, 131, 8221-8226
•Objective
• Articles
• Background
• Current Analytical Methods
• DNAzyme-Based Methods
Colorimetric Method
Fluorometric Method
• Comparison
• Critique
• Acknowledgement
Introduction
No known biological or physiological role in humans or other animals
But it has been widely used by human beings since ancient times
It has been used:
• Manufacture of automotive batteries
• Lead sheets, pipes, solder, bullets, insecticide, ceramic glazes, paints
• Tetraethyl lead, additive in gasoline to increase the octane rating
http://www.epa.gov/ttn/atw/hlthef/lead.html#ref1 (accessed September 11, 2009)
Potential Sources Lead Exposure
• Air: Combustion of gasoline, solid waste, oil, and coal; emissions from iron and steel manufacture, lead smelters, and tobacco smoke
• Food and soil
• Flaking paint, paint chips and dust
• Drinking water
• Workplace
http://www.epa.gov/ttn/atw/hlthef/lead.html#ref1 (accessed September 11, 2009)Lead and Your Health, National Institute of Environmental Health Sciences
Molecular Mechanism of Lead Toxicity
• Similar to the divalent ions Ca2+ and Zn2+, hence inhibits or mimics their action
• Able to interact with proteins--amine, carboxyl and sulfhydryl groups: distortion of enzymes and structural proteins
o Binding of lead to transporter inhibit or alter the ion transport across the membrane
o Inhibition of delta aminolevulinic acid dehydratase and ferrochelatase of heme biosynthetic pathway
Cornelis et al. Handbook of Elemental Speciation II - Species in the Environment, Food, Medicine and Occupational Health, Wiley,2005, 262-264Warren et al. TIBS 1998, 23, 217-221
Warren et al. TIBS 1998, 23, 217-221
Clinical Manifestations of Lead Poisoning
• Severe cramping abdominal pain
• Encephalopathy
• Hypertension
• Constipation
• Elevated excretion of heme biosynthetic intermediates
• Premature birth and low birth weights
http://www.atsdr.cdc.gov/csem/lead/pbphysiologic_effects2.html (accessed September 12, 2009)Warren et al. TIBS 1998, 23, 217-221
Toxicity Levels
Before mid-1960s: toxic threshold for children 60 µg/dL (600 ppb)
1978 : 30 µg/dL (300 ppb)
1985: 25 µg/dL (250 ppb)
1991 : 10 µg/dL (100 ppb)
Adverse effects even below 10 µg/dL
10 µg/dL = 0.1 ppm =100 ppb = 483 10 µg/dL = 0.1 ppm =100 ppb = 483 nMnM
http://www.labmanager.com/articles.asp?ID=60
‘Action level’ in water = 15 ppb
http://www.cdc.gov/nceh/lead/policy/changeBLL.htm
BTLL defined in different years
0
100
200
300
400
500
600
1965 1970 1975 1980 1985 1990 1995 2000 2005
Years
Blo
od to
xic
lead
leve
l (pp
b)
Source:http://www.cdc.gov/nceh/lead/data/State_Confirmed_byYear_1997_to_2006.xls
Status of Lead Poisoning in Louisiana
0.00%
0.50%
1.00%
1.50%
2.00%
2.50%
3.00%
3.50%
1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007
Year
Per
cen
tag
e o
f te
sted
ch
ildre
n w
ith
blo
od
le
ad le
vel a
bo
ve 1
0 u
g/d
L
•Objective
• Articles
• Background
• Current Analytical Methods
• DNAzyme-Based Methods
Colorimetric Method
Fluorometric Method
• Comparison
• Critique
• Acknowledgement
Current Analytical Methods
• Flame atomic absorption spectrometry (AAS)
• Graphite furnace atomic absorption spectrometry (GFAAS)
• Anodic stripping voltammetry (ASV)
• Inductively coupled plasma-atomic emission spectroscopy (ICP-AES)
• Inductively coupled plasma mass spectrometry (ICP-MS)
Advantages and Limitations of ICP-MS
• Commercially available
• Extremely sensitive (ppt)
• Very selective
• Rapid
• Multi-element analysis
• Wide dynamic range of 105
• Good accuracy and precision
Schutz et al. Occupational and Environmental Medicine, 1996;53:736-740Agilent ICP-MS Journal March 2005 – Issue 22http://web.uct.ac.za/depts/geolsci/facilities/icpms/lectures/lec2.html (accessed September 12, 2009)Li et al. Analytica Chimica Acta 2000, 419, 65-72
• Instrument very expensive
• High running cost due to large argon consumption ( 17 L/min)
• Not suitable for on-site and in situ analysis
• Requires sample pretreatment and skilled operators
• Relatively big volumes of samples
•Objective
• Articles
• Background
• Current Analytical Methods
• DNAzyme-Based Methods
Colorimetric Method
Fluorometric Method
• Comparison
• Critique
• Acknowledgement
DNAzymes
• Discovered in 1994
• Single stranded DNA molecules that catalyze diverse chemical and biological reactions
• Most of them require metal ions for their activity
• Not found in nature, but can be obtained by in vitro selection
Liu J., Cao Z., Lu Y. Chem. Rev. 2009, 109, 1948-1998
Breaker R. R. and Joyce F. G. Chem. Biol. 1994, 1, 223-229
Conserved core for 17E:CCGAGCCGGTCGAAA
rA
Adenosine Ribonucleotide
Liu J., Cao Z., Lu Y. Chem. Rev. 2009, 109, 1948-1998
Brown et al. Biochemistry 2003, 42, 7152-7161
Mechanism of Cleavage
Preparation of Lead-Specific DNAzyme
Prepared by in vitro selection procedure
Breaker R. R. and Joyce F. G. Chem. Biol. 1995, 2, 655-660
rA
Adenosine Ribonucleotide
Basic Principle of the Label-Free Colorimetric Assay
Wang Z., Lee J. H., Lu Y. Adv. Mater. 2008, 20, 3263-3267
Lead-Induced Cleavage and Effect of EDTA
Wang Z., Lee J. H., Lu Y. Adv. Mater. 2008, 20, 3263-3267
Calibration Curve and Selectivity
Detection limit: 3nM
Dynamic range: 3 nM - 1 µM.
Linear fitting range:
3 nM -100 nM
Wang Z., Lee J. H., Lu Y. Adv. Mater. 2008, 20, 3263-3267
Calibration Curve at pH 5.5
Dynamic range:
120 nM-20 µM
Wang Z., Lee J. H., Lu Y. Adv. Mater. 2008, 20, 3263-3267
Conclusions
• Simple
• Fast
• Sensitive and Selective
• Low detection limit: 3 nM
• Tunable dynamic range
• Suitable for on-site and real-time detection of lead ions
• Can be extended to other metal ions
• Objective
• Articles
• Background
• Current Analytical Methods
• DNAzyme-Based Methods
Colorimetric Method
Fluorometric Method
• Comparison
• Critique
• Acknowledgement
Basic Principle of the Fluorometric Method
Wang et al. J. Am. Chem. Soc. 2009, 131, 8221-8226
The Sequences used in the Study
D10 5′-/Dabcyl/-TATCTCTTCTCCGAGCCGGTCGAAATAGTGAG(T)10ACTCACTATrAGGAAGAGATA-/FAM/-3′
D7 5′-/Dabcyl/-ATCTTCCGAGCCGGTCGAAATAGTGAG-(T)10ACTCACTATrAGGAAGAT-/FAM/-3′
D5 5′-/Dabcyl/-ATTCCCCGAGCCGGTCGAAATAGTGAG-(T)10ACTCACTATrAGGAAT-/FAM/-3′
Wang et al. J. Am. Chem. Soc. 2009, 131, 8221-8226
http://www.sigmaaldrich.com/etc/medialib/docs/SAFC/General_Information/6-fam_flyer.Par.0001.File.dat/6-fam_flyer.pdf
N N N
HN
OP
N
O
OCN
6-Fluorescein (FAM) phosphoramidite
5′-4-(4-Dimethylaminophenylazo)benzoic acid (Dabcyl) phosphoramidite
Fluorescence Signal in the Presence and Absence of Lead Ions
Wang H. et al. J. Am. Chem. Soc. 2009, 131, 8221-8226
Quantifiable detection range 3 nM to 20 uM
Calibration Curve
Wang et al. J. Am. Chem. Soc. 2009, 131, 8221-8226
D10, 200 nM
Detection limit: 3 nM
Quantifiable detection range: 2 nM to 20 µM
Selectivity Studies of the Sensor
Wang et al. J. Am. Chem. Soc. 2009, 131, 8221-8226
Wang et al. J. Am. Chem. Soc. 2009, 131, 8221-8226
Single Lead Ion Reaction Kinetics
• Simple
• Rapid
• High sensitivity with a quantifiable detection range 3 nM to 20 µM
• High selectivity: more than 80-fold over other divalent metal ions
• Detection limit: 1600 times better than atomic spectroscopy
• Single ion monitoring
Conclusions
• Objective
• Articles
• Background
• Current Analytical Methods
• DNAzyme-Based Methods
Colorimetric Method
Fluorometric Method
• Comparison
• Critique
• Acknowledgement
ICP-MS Fluorometric
Colorimetric
LOD ~ 0 .1 nM 3 nM 3 nM
Precision 1-5% NA NA
Accuracy
1-10% NA NA
Dynamic Range 105 103 102
Selectivity Selective Selective Selective
Simplicity Sophisticated Simple Simplest
Instrument Cost $ 150-200 K $ 40-50 K $ 40-50 K
Comparison
Schutz et al. Occupational and Environmental Medicine, 1996;53:736-740Thomas Robert, Practical Guide to ICP-MS, Marcel Dekker Inc. 2004, p271Li J. et al. Analytica Chimica Acta 2000, 419, 65-72Wolf R. E. Atomic Spectroscopy 1997, 18, 169-174
• Objective
• Articles
• Background
• Current Analytical Methods
• DNAzyme-Based Methods
Colorimetric Method
Fluorometric Method
• Comparison
• Critique
• Acknowledgement
Critique
• Simple
• Fast
• Cost-effective
• Sensitive
• Selective
• Suitable for on-site analysis• Do not describe the analysis of real world samples
• Large error bars, low precision
• For fluorometric method, the signal seems to level off at ~2 µM not at 20 µM
• Selectivity more than 80-fold, does not seem from the figure 4
Acknowledgements
Dr. Warner Dr. Warner Monica Sylvain Monica Sylvain Warner Research Group Warner Research Group