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By: Luis Fuentes-Montero (Luiso) Esmeralda, Esmeralda, program for treating Laue images program for treating Laue images

By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

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Page 1: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

By: Luis Fuentes-Montero(Luiso)

Esmeralda,Esmeralda,program for treating Laue imagesprogram for treating Laue images

Page 2: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

What does ESMERALDA do?

• Image Visualizations• Algorithms for finding peaks• Tools for crystal orientation• Intensity integration• Saves files to be used at next stages

Page 3: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Image HandlingDifferent colour Palettes

Page 4: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Image HandlingAdjustable contrast

Page 5: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Image Handling• 3D view

Page 6: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Image Handling

Peak finding Tool

Page 7: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Image Handling

Peak finding Tool

Page 8: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Image Handling Peak finding Tool

Page 9: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Image Handling Peak finding Tool

Page 10: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Three algorithms for orienting the crystal automatically

Angular comparison

• The fastest one• Almost completely

automatic• No need of starting

point• Almost always finds

a solution

All Possible rotations

• The Slowest one• Completely automatic• If there is a starting

point becomes not so slow

• Always finds a solution

• Almost as fast as angular comparison

• Almost completely automatic

• No need of starting point

• Always finds a solution

Scanning and successive approaches (Renninger rotations)

Page 11: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Orienting with Esmeralda

Page 12: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images
Page 13: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images
Page 14: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

orienting the crystal

Page 15: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

orienting the crystal

Page 16: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Evolution and improvement in the peak integration algorithm

Page 17: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Peak integration Background subtraction

Page 18: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Peak integration

Background Treatment

I1

Page 19: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Peak integration Background subtraction

Page 20: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Peak integration Pixel treatment

Page 21: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Peak integration Pixel treatment

Page 22: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Peak integration Pixel treatment

Page 23: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Peak integration

d1

d2

Pixel treatment

P

I1

I2(-312.6782 , -50.82541 ) I= 373636.9 (-307.6769 , -49.22461 ) I= 145032.8

Page 24: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Integration along a curve

Page 25: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

Steps to follow (time to run Esmerlada)

• Edit cfl file with new cell• Open cfl file• Open image(s)• Adjust contrast• Find peaks• Select nodal peaks• View calculated spots and compare with the experimental

ones (in quantity)• Adjust wavelength parameters• Try to orient a few times with automatic algorithms.• Try to orient manually.• Have a look at the symmetry and compare calculated-

experimental

Page 26: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

peculiarities of stereographic projection

Page 27: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

peculiarities of stereographic projection

Page 28: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

peculiarities of stereographic projection

Page 29: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

peculiarities of stereographic projection

Page 30: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images

How to contact Luiso:

[email protected][email protected]@gmail.com

Page 31: By: Luis Fuentes-Montero (Luiso) Esmeralda, program for treating Laue images