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Biological Characteristics of Biological Characteristics of Bacteria Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

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Page 1: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Biological Characteristics of BacteriaBiological Characteristics of Bacteria

•The Growth, Survival & Death of

Microorganism

•Cultivation of Microorganism

•Microbial Metabolism

Page 2: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

The growth of microorganisms

Growth is the orderly increase in all the components of an organism such as size and/or population number.

The rule for bacteria growth can be described as

single cell dynamics and population dynamics

Page 3: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Bacteria multiply by binary fission, the process in which a parent cell splits into two daughter cells with approximately equal size.

Growth:Growth: single cell dynamics

a. Bacterial cell first can been seen to enlarge or elongate.

a

b. Then followed by the formation of transverse membrane and new cell wall.

b

c. The new membrane and cell wall grow inward from the outer layers.

c

d. The cell divided into two daughter cells.d

Page 4: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

•Under optimal conditions, the average time required for a

population of bacteria to double in number (for complete cell

division) is called as generation time or doubling time.

•The generation time for many common bacteria is 20-30 min, for a

few of slow-growing bacteria such as Tuberculosis bacteria might be

up to 18-20 h.

Growth:Growth: single cell dynamics

Page 5: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

•When microorganisms are grown, due to some factors such as

nutrient limitation and waste accumulation, growth rate cannot

maintain for a long time.

Growth:Growth: population cell dynamics

•If a liquid medium is incubated with microbial cells, and the

number of viable bacterial cells per milliliter is measured and

plotted, we can obtain a curve that called as growth curve.

•Normally characterized by the phases lag, log (or exponential)

growth, stationary growth, and death.

Page 6: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

How to Graph Bacterial Growth (i)How to Graph Bacterial Growth (i)

(I) Measuring the numbers of bacteria.

Common methods include:

a) Turbidity: to measure the total bacteria (live and dead) in liquid

cultures. This is usually quantitated with a spectrophotometer,

the absorption wavelength at 600 nm will be measured.

b) Colony counting method: that means counting the colony

numbers on a medium plate after inoculated with a known

volume of bacterial liquid culture.

Page 7: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Measuring total bacteria (live + dead) in liquid culture——Turbidity (Cloudiness)

The cloudiness of a liquid media caused by

bacteria growth that are generally invisible to

the naked eye, similar to smoke in air.

Page 8: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Measuring viable bacteria

colony

A visible cluster of bacteria

growing on the surface of or

within a solid medium,

presumably cultured from a

single cell

Page 9: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

How to Graph Bacterial Growth (ii)How to Graph Bacterial Growth (ii)

(II) Plotting the log of turbidity or number of living cells

versus time is referred to as the growth curve (four or six

phases):

GrowthGrowth Curve (four Curve (four

phases)phases)

Page 10: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Y-axis presents the log number of living cellsX-axis presents the period of time (usually in hours)The curve can be divided into six phages represented by the letters A-F

GrowthGrowth curve (six phases)

A: lag phase,B: acceleration phase,C: log (exponential) phase,D: deceleration phase,E: stationary phase,F: death phase

Page 11: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

What are the characteristics of bacteria in each phase?

Page 12: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Growth curve (four phases)

•The Lag Phase (A and B):

Bacteria are becoming "acclimated" to the new environmental conditions (pH, temperature, nutrients, etc.) (A).

Enzymes and intermediates are formed and accumulate until they are present in concentrations that are permit growth (B).

An increase in bacterial mass per unit of

volume, but no increase in cell count.

The metabolism of the bacteria adapts to the

conditions of the nutrient medium.

Page 13: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Growth curve (four phases)

•The Exponential/log Phase (C):

Conditions are optimal for growth.

The living bacteria population increases rapidly with

time at an exponential growth in numbers, and the

growth rate increasing with time.

The bacteria are suitable for biochemical and morphological identification,

The bacteria are suitable to use for drug sensitivity test

Page 14: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Growth curve (four phases)

•The Maximum Stationary Phase (D and E):

With the exhaustion of nutrients and accumulation of

metabolic wastes, the growth rate has slowed to the

point where the growth rate equals the death rate (D).

Effectively, there is no net growth in the living bacteria

population (E).

The bacteria produce spores, toxins (e.g.

exotoxin) and antibiotics.

Page 15: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Growth curve (four phases)

•The Decline Phase (F):

The living bacteria population decreases with time, due to a

lack of nutrients and toxic metabolic by-products.

In many cases (but not always) the bacteria autolyse (during

the death phase) and the turbidity decreases.

Page 16: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

AABB

CC

DD

EE

FF

/exponential growth/exponential growth

accelerationacceleration

retardationretardation

/decline

maximummaximum

AABB

CC

DD

EE

FF

/exponential growth/exponential growth

accelerationacceleration

retardationretardation

/decline

maximummaximumSection Phase Growth rate

A Lag Zero

B Acceleration Increasing

C Exponential

/Log

Constant

D Retardation Decreasing

E Maximum stationary

Zero

F Decline/death Negative

GrowthGrowth curve

Page 17: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Biological Characteristics of BacteriaBiological Characteristics of Bacteria

• The Growth, Survival & Death of

Microorganism

• Cultivation of Microorganism

• Microbial Metabolism

Page 18: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

What are the requirements for

bacterial growth?

Page 19: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Bacterial chemical components

• Water: free water and compound water.

• Inorganic salt: phosphus, potassium, magnesium, calcium, nitrium, etc.

• Protein: 50-80% of dry weight according bacterial kinds and age.

• Sugar: mainly distributing in cell wall and capsule.

• Lipids: composed of lipid, fatty acid, wax, etc.

• Nucleic acid: RNA and DNA.

Page 20: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Sources of metabolic energy

• fermentation An enzyme-induced chemical change in organic compounds

that takes place in the absence of oxygen. The change usually

results in the production of organic acids and energy

• respiration The process cells use to convert the energy in the chemical

bonds of nutrients to ATP energy.

Aerobic respiration

Anaerobic respiration

Page 21: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Sources of metabolic energy

•photosynthesis Reduction of an oxidant via a specific series of electron carriers

establishes the proton motive force.

Respiration: the energetically favorable oxidation of organic matter

by an electron acceptor such as oxygen

Photosynthesis: the reductant and oxidant are created

photochemically by light energy absorbed by pigments in the membrane

Page 22: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Bacterial Nutrition and Growth

•Nutrient Requirements:

Water

Carbon source (C)

Nitrogen source (N)

Inorganic salts

Growth factors

Sulfur source (S)

Phosphorus source (P)

•Environmental factors for bacteria growth:

Temperature

Gas (oxygen)

pH

Osmotic pressure

Page 23: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

1) Carbon source

Based on their source of carbon including nitrogen, bacteria are

divided into two groups : Autotrophs and Heterotrophs.

Autotrophs: This group of bacteria has a more complete enzyme

system so they can obtain energy and various nutrients from simple

compounds such as carbon from CO2.

Nutrient Requirements

None of these organisms are pathogenic !

Page 24: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Heterotrophs: This group of bacteria has a simpler set of

enzymes so they must use organic carbon for growth.

It can be further divided into:

Parasitic bacteria: grow in and feed on a different organism.

Saprophytic bacteria: obtain their nutrients from dead or decaying organic

matter.

Most of pathogenic bacteria are parasitic bacteria.

Some saprophytic bacteria cause disease by acting on food to

produce toxins.

Page 25: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

2) Nitrogen source

A major component of proteins, nucleic acids, and other

compounds.

Nitrogen fixation: The ability to assimilate N2 reductively via

NH3. This process requires a large amount of metabolic energy and is

readily inactivated by oxygen. It is a property unique to prokaryotes,

especially in divergent bacteria, that have evolved quite different

biochemical strategies to protect their nitrogen-fixing enzymes from

oxygen.

Nutrient Requirements

Page 26: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

3) Mineral source

Required for appropriate osmotic pressure.

Additionally, also needed to stabilize or activate certain

enzymes.

Nutrient Requirements

In formulating a medium for the cultivation of most microorganisms,

it is necessary to provide sources of potassium, magnesium, calcium,

and iron, usually as their ions (K+, Mg2+, Ca2+, and Fe2+).

Page 27: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

4) Growth factors

A growth factor is an organic compound which a cell

must contain in order to grow but unable to synthesize.

A number of different growth factors are required for

bacterial growth such as amino acids, purines, pyrimidines,

and some certain vitamins.

Nutrient Requirements

Page 28: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

5) pH

Most bacteria have a narrow optimal pH range.

Neutralophiles: grow best at neutral pH (pH 6.0-8.0, 7.5)

Some can survive/grow

- Acidophiles (pH 1.0-6.5 )

- Alkaliphiles (pH 9.0-11 )

Environmental factors for bacteria growth

Internal pH is regulated by a set of proton transport systems in the

cytoplasmic membrane, including a primary, ATP-driven proton pump.

Page 29: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

6) Temperature

Different microbial species are vary widely in their optimal

temperature ranges for growth:

Mesophilic forms 30-37 ℃

All human microbial pathogens belong to this forms

Psychrophilic forms 15-20 ℃

Thermophilic forms 50-60 ℃

Environmental factors for bacteria growth

Page 30: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

High Temperature

static action cidal action

Page 31: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

6) Temperature

Heat-shock response:a transient synthesis of a set of "heat-shock proteins," when

exposed to a sudden rise in temperature above the growth

optimum. These proteins appear to be unusually heat-

resistant and to stabilize the heat-sensitive proteins of the

cell.

Cold shock response: the killing of cells by rapid as opposed to slow cooling.

Page 32: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

7) Gas Requirements According to the requirement of O2 during bacteria growth,

bacteria can be divided into four groups:

Aerobic Anaerobic

1. Obligate aerobe: Growth No growth

2. Microaerophile: Growth at low O2 No growth

3. Obligate Anaerobe: No growth Growth

4. Facultative aerobe: Growth Growth

Environmental factors for bacteria growth

Page 33: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Obligate aerobes

• grow in presence of oxygen

• no fermentation

• oxidative phosphorylation

(Electron transfer through the cytochrome system liberating free

energy which is transformed into high-energy phosphate bonds)

Page 34: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Microaerophile (Microaerophilic bacteria)

grow – low oxygen (2-5%)

killed – high oxygen

Page 35: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• no oxidative phosphorylation• fermentation• killed by oxygen• lack certain enzymes:

Obligate anaerobes

peroxidase

O2-

+2H+

H2O2

superoxide dismutase

catalase

H2O + O2

H2O /NAD NADH

Page 36: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Facultative anaerobes

• fermentation and oxidative phosphorylation • aerobic respiration• survive in oxygen

Page 37: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Cultivation methods

Concerning two parts:

I. Choice of suitable medium

II. Isolation of bacteria for pure culture

Page 38: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

I. Choice of suitable I. Choice of suitable

mediummedium

Page 39: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Medium (I)

(1) raise a crop of cells of a particular species that is on ha

nd;

(2) determine the numbers and types of organisms present

in a given material;

(3) isolate a particular type of microorganism from a natur

al source.

Page 40: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Medium (I)

• A classification of media based on their respective usages:

Basic medium

Enrichment medium

Selective medium

Differential medium

Page 41: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Basic medium:

supplies only the minimal nutritional requirements of a

particular microorganism. e.g. broth

Enrichment medium:

Nutrient broth, nutrient agar, peptone water are commonly used

in enrichment media. e.g. blood agar plate

Page 42: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Selective medium:

Supports the growth of desired bacteria while inhibiting the

growth of many or most of the unwanted ones, either by

adding one or more selective agents which is a "poison" to the

unwanted bacteria but not harmful to desired bacteria, or by

including certain nutrients for the desired ones and deleting

certain nutrients for the unwanted ones.

e.g. L-G medium for M. tuberculosis

Page 43: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Differential medium

This medium allows two or more different bacteria to grow,

but it contains dyes and/or other components upon which

different bacteria act in various ways to produce a variety of

end products or effects (usually by showing different colors).

e.g. SS agar

Page 44: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Medium (II)

• Classification according to physical condition

(according to the content of solidifying agent):

liquid medium

Solid medium

Semi-solid medium

Page 45: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• Agar

•The major solidifying agent used in bacteriological media.

• An polysaccharide gum that extracted from certain red algae.

• Agar can be dissolved at 100 C, and solidified at about 43 C.

•Added 1.5-2.0% of Agar for solid plates or slanted media, 0.1-

0.5% for semisolid media.

Page 46: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Usage of different media

• liquid medium

Used to obtain a large number of bacteria, and to perform

drug sensitivity test and bacterial growth assay.

The bacteria grown in liquid medium will display some

certain characteristics of bacteria (alignment and clustering)

that can't be seen easily in solid media.

Page 47: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• Phenomena of bacterial growth in liquid medium

(i) forming cloudiness in broth

(growth with uniform turbid pattern),

(i) forming a ring at the top of broth

(growth with suspension pattern)

(ii) forming sediment at the bottom of

broth

(growth with sedimentary pattern)

ii ii ii iii iii

Page 48: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Solid medium

Used to obtain a large number of bacteria, isolate identical clones

of bacteria (colony), and to perform drug sensitivity test.

A colony is a bacterial cluster which propagated (multiplied)

from a single initial bacterial cell (So a colony is a pure bacterial

culture).

Colony can be used to determine the original bacterial numbers

by counting colonies and to evaluate viability of bacteria (colony

forming units, CFU).

Page 49: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Semisolid medium

Test the motility of bacteria (a bacterium has a flagellum or

flagella whether or not )

Positive: bacteria grow into the medium

give cloudiness to the medium.

Negative: bacteria grow in situ.

Page 50: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Cultivation methods

II. Isolation of bacteria in pure II. Isolation of bacteria in pure

culture culture

Page 51: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

•In order to study the properties of a given bacterium, it is

necessary to handle it in pure culture (free of all other

types of bacteria).

•Several methods are used to get pure-culture purpose:

a) Platingpour-plate methodStreaking

b) Dilution

Page 52: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Pour-plate methodPour-plate method

Pour Plate

A suspension of bacteria is mixed

with melted agar at 50 C and poured

into a dish. When the agar solidifies,

the bacterial cells are immobilized in

the agar and grow into colonies after

incubation.

If the suspension was sufficiently

dilute, the colonies will be well

separated.

Page 53: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

StreakingStreaking

Procedure:

  1.  Flame the loop and streak a loopful of broth culture as at A in the diagram.   2.  Reflame the loop and cool it.   3.  Streak as at B to spread the original inoculum over more of the agar.   4.  Reflame the loop and cool it.   5.  Streak as at C.   6.  Reflame the loop and cool it.   7.  Streak as at D.   8.  Incubate the plate inverted.

Page 54: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

StreakingStreaking

By spreading a large amount of bacteria over the surface of a plate,

the amount of bacteria is diluted and individual cells are spread. 

From these individual cells a single colony arises. 

Wire loop

Dish

Colony (pure culture)

Page 55: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• DilutionDilution

•A much less reliable method for pure culture.

a) The suspension is serially diluted and samples of each

dilution are plated.

b) If only a few samples of a particular dilution exhibit

growth, it is presumed that some of these cultures started

from single cells.

Page 56: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Steps in isolation and identification

•Sample collection

•Isolation (pure culture)

•Identification (microscopy and biochemical)

•Classification (species, type)

•Susceptibility to antibiotics

Page 57: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• Sample collection:

Depending on the disease suspected, different types of

specimens can be taken for culture,

e.g. stool for diarrhoea, and urine for urinary tract

infection.

Page 58: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• Susceptibility to antibiotics

A pure culture of bacteria can be tested for antibiotic resistance

by evenly swabbing it over an agar plate and pressing discs of

antibiotic into the agar. After a period of incubation, sensitivity

or resistance to the antibiotic can be determined by measuring

the zone that forms around the disc.

Large zones mean the bacteria

are sensitive to the drug

Small or nonexistent zones are

signs of resistance.

Page 59: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Biological Characteristics of BacteriaBiological Characteristics of Bacteria

• The Growth, Survival & Death of

Microorganism

• Cultivation of Microorganism

• Microbial Metabolism

Page 60: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Microbial Metabolism

Metabolism refers to all the biochemical reactions that occur in a

cell or organism.

1) pathways for the interconversion of focal metabolites

2) assimilatory pathways for the formation of focal metabolites

3) biosynthetic sequences for the conversion of focal metabolites to

end products

4) pathways that yield metabolic energy for growth and

maintenance.

Page 61: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Microbial Metabolism

The key concepts of glycolysis, Krebs Cycle, oxidative

phosphorylation have been or will be discussed in biochemistry.

Concentrates here are put on the products of bacterial metabolism

with medical importance (e.g. for laboratory diagnosis or for

bacterial pathogenesis).

Page 62: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• Medical Important Metabolic Products

1. anabolic processes (synthesis or build up)

2. catabolic processes (decomposition or break down)

Page 63: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Catabolic Products and Biochemical Testing

a. Carbohydrate Fermentation Tests

Medium: Carbohydrate fermentation broth with a

Durham tube (a small inverted vial filled with the

carbohydrate fermentation broth).

If gas is produced during fermentation of the sugar, it is

trapped at the top of the Durham tube and appears as a

bubble.

pH indicator: phenol red

Page 64: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

a. Carbohydrate Fermentation Tests

Principle: Because the type of enzyme(s) produced by

bacteria is genetically controlled, the fermented pattern of

sugars may be unique to a species, but may be different

between different species.

Fermentation products are usually acid (lactic acid, acetic

acid etc.), neutral (ethanol etc.) or gases (carbon dioxide,

hyrogen, etc).

Page 65: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

a. Carbohydrate Fermentation Tests

Result:

positive

yellow color

yellow color with gas bubble

negative

red color, no gas bubble

Page 66: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

b. Methyl Red (MR) Test

Medium: contains glucose and peptone

Indicator: methyl Red

All enterics oxidize glucose for energy; however the end

products vary depending on bacterial enzymes.

Page 67: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

b. Methyl Red (MR) Test

For bacteria (e.g. E. coli ) that produces acids, causing the pH to

drop below 4.4. When the pH indicator methyl red is added to this

acidic broth it will be cherry red (a positive MR test).  

For bacteria (e.g. Klebsiella and Enterobacter) that produce more

neutral products from glucose (e.g. ethyl alcohol, acetyl methyl

carbinol). In this neutral pH the growth of the bacteria is not

inhibited. The bacteria thus begin to attack the peptone in the broth,

causing the pH to rise above 6.2. At this pH, methyl red indicator is

a yellow color (a negative MR test).

Page 68: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Result:Result:

Page 69: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

c. Voges-Proskauer (VP) Test

Medium: contains glucose and peptone Indicator: Barritt's A (alpha-napthol) and Barritt's B (potassium hydroxide)

When these reagents are added to a broth in which acetyl methyl carbinol is present, they turn a pink-burgundy color (a positive VP test).

This color may take 20 to 30 minutes to develop.

E. coli does not produce acetyl methyl carbinol, but Enterobacter and Klebsiella do.

Page 70: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

c. Voges-Proskauer (VP) Test

Page 71: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

d. Citrate Utilization Test

The citrate test utilizes Simmon's citrate

media to determine if a bacterium can grow

utilizing citrate as its sole carbon and

energy source.

Growth of bacteria in the media leads to

development of a Prussian blue color

(positive citrate).

Page 72: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

e. Indole TestThe test organism is inoculated into tryptone broth, a rich

source of the amino acid tryptophan.

Indole positive bacteria such as E. coli produce tryptophanase,

an enzyme that cleaves tryptophan, producing indole and other

products.

When Kovac's reagent is added to a

broth with indole in it, a dark pink

color develops.

Page 73: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

I M Vi C test

VP testCitrate utilization test

Indol testMethyl test

I M Vi CE. coli + + — —

C. perfringens — — + +

Page 74: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• f. Hydrogen Sulfide (H2S ) formation

To determine the ability of a bacterium to produce hydrogen

sulfide (H2S) by enzymatic reaction on amino acids such as

cysteine, cystine and methionine.

The hydrogen sulfide combines with ferrous

sulfide (Fe2S) in the triple sugar iron (TSI)

agar to form a black to dark insoluble

precipitate.

Page 75: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• g. Urease Test

Medium: urea agar slant

Indicator: phenol red

Principle: The hydrolysis of urea by urease produces ammonia and carbon dioxide. The formation of ammonia alkalinizes the medium, and the pH is detected by the color change from light orange to pink-red.

Positive result: pink-red color

Negative result: light orange

Page 76: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

What are the medically important

anabolic products of bacteria?

Page 77: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Synthetic Products

• Pyrogens • Toxins and Invasive Enzymes• Antibiotics• Vitamins• Bacteriocins• Pigments

Page 78: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• Pyrogens Pyrogens

• the products of many bacteria, especially gram-negative

bacteria, which resulting in fever when injected into animals or

humans.

• They are polysaccharides in cell wall (G+ bacteria) or LPS

(G- bacteria).

• They are highly resistant to high heat (not being destroyed

heating at 121C for 15-20 min), but can be destroyed by

heating to 250 C for 30 min.

• They can be removed from most fluid materials by adsorption

using special materials.

Page 79: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• Toxins Toxins andand Invasive Enzymes Invasive Enzymes

• According to difference on the chemical composition,

toxicity, bioactivity, antigenicity and so on, bacterial

toxins can be divided into exotoxin (polypeptide or

protein) and endotoxin (LPS).

• Invasive enzymes secreted by bacteria can help bacteria

to invade host. So they contributed to the pathogenesis of

bacteria.

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• AntibioticsAntibiotics

• The substance produced by many fungi and a

small number of bacteria that selectively kill or

inhibit other organisms.

Page 81: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• VitaminsVitamins

• A few bacteria produce various vitamins, e.g.

some certain bacteria growing in the intestine

produce vitamin K. This action is thought to be

beneficial to the host.

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• BacteriocinsBacteriocins

• Substances produced by specific strains of bacteria

that are lethal against other strains of the same or

related species.

• They are protein or lipopolysaccharide-protein

complexes.

Page 83: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

• pigmentspigments

• Produced by a small number of bacteria with

characteristic colors.

I) water soluble Pseudomonas aeruginosa can produce a green water soluble

pigment, so that the color is distributed throughout the culture.

II) liposolubleStaphylococcus aureus can produce a golden yellow liposoluble

pigment and this color only show in their colonies.

• Help to identify some of bacteria.

Page 84: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Pseudomonas aeruginosa produces a blue-green pigment, which diffuses into the medium giving the plate a characteristic color.

                        

                               

     Staphylococcus aureus produces a golden yellow pigment and give the colonies this color.

Page 85: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

The medical significance of these products

Products Medical significance

pyrogen

Pathogenicity of bacteriatoxin

Invasive enzyme

Antibiotic Treatment of infectious diseasesVitamin

Bacteriocin Identification of bacteria

pigment

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Antibiotics and

Antibiotic Resistance

Page 87: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Antibiotics

Antibiotics are powerful medicines that fight bacterial infection

Literal translation• anti – against• biotic – living things

Page 88: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

How antibiotics workAntibiotics can be either• Broad Spectrum

– Kill a wide range of bacteria e.g. Penicillin

• Narrow Spectrum

– Kill a specific type or group of bacteria e.g. Isoniazid, Rifampicintablets

Antibiotics work in one of two ways• Bactericidal

– Kills the bacteria

• Bacteriostatic– Prevents the bacteria from dividing

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Miracle Cure?

– Before the 1930s there were no treatments for bacterial infections

– Following the discovery of penicillin industry started searching for more antibiotics in nature

– Streptomycin was the first drug to have an effect on tuberculosis – a condition previously untreatable

– Surgeons could attempt more dangerous operations

Page 90: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Miracle Cure?

– Many antibiotics prescribed by the doctor are broad spectrum

– These kill the body’s good bacteria as well as the bad

– With the good bacteria gone there is more room for bad microbes to invade!

Overuse of antibiotics can damage our normal/good bacteria.

Page 91: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Miracle Cure?

Antibiotics resistance Many bacteria have developed the ability to become

resistant to antibiotics.

These bacteria are now a major threat in our hospitals.

Antibiotic resistant bacteria include Methicillin Resistant Staphylococcus aureus (MRSA)

Page 92: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Antibiotic Resistance

The Causes

– Overuse

• Antibiotics used to treat infections when they are not needed or not effective i.e. for the flu

– Misuse

• Not completing a prescribed course

• Using antibiotics not prescribed for you

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Bacterialcidal Mechanism

Cell Wall Cell Membrane

Mitochondria DNA RibosomalComplex

Page 94: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Bacterialcidal Mechanism

• Damaging or inhibiting synthesis of the bacterial cell

wall (penicillins, cephalosporins, monobactams,

carbapenems, bacitracin, vancomycin, cycloserine,

fosfomycin)

• Damaging or inhibiting synthesis of the cell

membrane (polymyxins)

Page 95: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Bacterialcidal Mechanism

• Metabolizing or inhibiting DNA synthesis of nucleic acids

(rifampin, nitrofurantoins, nitromidazoles)

• Modifying ribosomal energy metabolism (sulfonamides,

trimethroprim, dapsone, isoniazid)

• Inhibiting ribosomal protein biosynthesis (aminoglycosides,

tetracyclines, chloramphenicol, erythromycin, clindamycin, spectinomycin,

mupirocin, fusidic acid)

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Acquired Bacterial Resistance

VirusPlasmid

Page 97: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Acquired Bacterial Resistance

• Receiving a plasmid bearing a resistance gene from

another bacterium directly

• Receiving a resistance gene from other bacterium by

viral transfection

• Chromosomal mutation

• DNA scavenged from dead bacteria

Page 98: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Mechanisms of resistance

Penicillins,Cephalosporins

Tetracycline

Streptococcus pneumoniae resistance to penicillins

MRSA penicillin

binding protein PBP2A

Imipenem resistant Pseudomonas aeruginosae

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Mechanisms of resistance

• Antibiotic modification: some bacteria have enzymes that cleave or modify antibiotics: e.g. β-lactamase inactivates penicillin

• Denied access: membrane becomes impermeable for antibiotic: e.g. imipenem

• Pumping out the antibiotic faster than it gets in: e.g. tetracyclines

• Altered target site: antibiotic cannot bind to its intended target because the target itself has been modified

• Production of alternative target (typically enzyme): e.g. Alternative penicillin binding protein (PBP2a) in MRSA

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Loss of Antibiotic Resistance

• Antibiotic resistant bacteria are at a selective

disadvantage - they must expend energy and

resources to manufacture proteins that confer

resistance

• The prevalence of resistant bacteria declines after

antibiotics are withdrawn

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How antibiotic resistance can be prevented

– Antibiotics should be the last line of defence NOT the first

• Most common infections will get better by themselves through time, bed rest, liquid intake and healthy living.

– Only take antibiotics prescribed by a doctor

– If prescribed antibiotics, finish the course.

– Do not use other peoples or leftover antibiotics • they be specific for some other infection

Page 102: Biological Characteristics of Bacteria The Growth, Survival & Death of Microorganism Cultivation of Microorganism Microbial Metabolism

Summary

1) Definitions: pyrogen, antibiotic and acteriocin

2) Bacteria growth curve, especially the characteristics and application of log

phase and maximum stationary phase.

3) The medically important antibiotic products of bacteria

4) The requirements of bacterial growth

5) The mode of bacterial reproduction