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BeispielbildSYNTHESYS II:
Updating the BioCASe Technology Suite
Jörg HoletschekBotanic Garden & Botanical Museum Berlin-DahlemDept. of Biodiversity Informatics and LaboratoriesKönigin-Luise-Straße 6-814195 Berlin
TDWG Annual Meeting 2011October 16th – 21st, New Orleans
2SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
The BioCASe Technology Suite
Biological Collection Access Service
Set of Standards and Software Packages for publishing primary biodiversity data of natural history collection & observation databases
Developed and maintained by EU-funded projects:
2001-05 BioCASE Project (Biological Access Service for Europe)
2005-09 SYNTHESYS (Synthesis of Systematic Resources)
2009-13 SYNTHESYS II
3SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
ABCD and BioCASe Protocol
4SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
BioCASe Provider Software
Publishes occurrence data as a BioCASe web service
Compatible with several protocols (BioCASe, DiGIR) and data schemas (ABCD, DarwinCore, ABCD-EFG, ABCD-DNA)
Works with SQL-compliant databases
Currently ~95 installations serving ~1,500 collections with ~33.5m records to GBIF and BioCASe
Platform independent
5SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
BioCASe Data Portals
6SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
Updating BioCASe: DNA/EFG Extensions
EFG: Extension for Geosciences (Paleontology, Mineralogy)
Network with currently 7 data providers
ABCD-DNA Extension,Network with currently 5 members
7SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
Updating BioCASe: AVH/HISPID
8SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
Traditional BioCASe Web Service
Web Service
9SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
New GBIF Indexing Approach: DwC Archives
10SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
From ABCD to DarwinCore Archives
BioCASE ABCD Web Service
1. Dumping: BioCASe Provider Software
2. Transforming: Pentaho Data Integration
ABCD Archive
DarwinCore Archive(s)
Networks
BioCASe Provider Software 3
11SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
From ABCD to DarwinCore Archives
12SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
Outlook
BioCASe Data portals
rely on the availability of a web service for single record retrieval
need to be made DwC-Archive ready
ABCD- version 3 (assuming funding…)- Ontology?
13SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans
Jörg Holetschek
Botanischer Garten & Botanisches MuseumAbteilung Biodiversitätsinformatik & Labors
Königin-Luise-Straße 6-814195 Berlin-Dahlem
[email protected]. +49 30 838 50150
www.bgbm.org/biodivinf
www.biocase.orgwiki.bgbm.org/bpssearch.biocase.org
