Supplementary Figure S12 Genetic and physical map for linkage group A4 showing distribution and colinearity of SNP markers. The representative integrated map of the four populations for linkage group A4 is shown on the left and the physical map is shown on the right. Marker positions in centiMorgans are on the left of the bar of the genetic map. Physical map distances are in ‘x100,000’ bases. SNPs have been shown with corresponding Brassica rapa gene names in parentheses. Connectors show the order of markers among the two maps.

Tetralocular ovary and high silique width in yellow sarson lines of Brassica rapa (subspecies trilocularis) are due to a mutation in Bra034340 gene, a homologue of CLAVATA3 in Arabidopsis

Theoretical and Applied Genetics

Satish Kumar Yadava1, Kumar Paritosh1, Priya Panjabi-Massand1,2, Vibha Gupta1, Atika Chandra1,4, Y S Sodhi1, Akshay K Pradhan1,2, Deepak Pental1,2*

Address: 1Centre for Genetic Manipulation of Crop Plants, University of Delhi South Campus, Benito Juarez Road, New Delhi – 110021. India. 2Department of Genetics, University of Delhi South Campus, Benito Juarez Road, New Delhi – 110021. India.

3Present address: Department of Botany, University of Delhi, Delhi – 110007. India.

4Present address: Department of Botany, Maitreyi College, University of Delhi, New Delhi – 110021. India.

*Corresponding authordpental@gmail.comTelephone: 91-011-24112609Fax: 91-011-24116392

BC_CT_1185(Bra040318)3.2BC_CT_1282(Bra039326)3.3

BC_CT_1280(Bra037656)5.0

BC_CT_1155(Bra037697)7.5

BC_CT_1014(Bra016906)9.1

BC_CT_1236(Bra016937)10.3BC_CT_1237(Bra016957)10.7BC_CT_1235(Bra016925)11.4

BC_CT_1187(Bra017140)13.8

BC_CT_1021(Bra021922)17.0

BC_CT_1015(Bra017189)18.8

BC_CT_1086(Bra017221)20.4

BC_CT_1254(Bra021912)23.8

BC_CT_1253(Bra021714)30.2BC_CT_1109(Bra021713)30.5BC_CT_1623(Bra034314)33.9BC_CT_1630(Bra035667)34.3BC_CT_1622(Bra034303)34.8BC_CT_1626(Bra034358)34.9BC_CT_1621(Bra034294)35.3BC_CT_1624(Bra034315)35.3BC_CT_1625(Bra034343)35.4BC_CT_1619(Bra034279)35.4Bra034340(CLAVATA3)35.6BC_CT_1627(Bra034366)36.3BC_CT_1628(Bra034367)36.3BC_CT_1631(Bra035696)36.8BC_CT_1629(Bra034386)36.8BC_CT_1613(Bra032046)37.8BC_CT_1614(Bra032047)BC_CT_1612(Bra032040)38.2

BC_CT_1617(Bra032175)39.2BC_CT_1606(Bra030196)39.3BC_CT_1616(Bra032169)39.4BC_CT_1608(Bra030212)40.0BC_CT_1140(Bra032166)40.2BC_CT_1609(Bra030249)42.1BC_CT_1610(Bra030269)43.2BC_CT_1186(Bra030275)43.2BC_CT_1611(Bra030286)44.4BC_CT_1646(Bra030331)45.2BC_CT_1634(Bra030339)45.4BC_CT_1647(Bra025489)47.4BC_CT_1642(Bra025520)BC_CT_1588(Bra025518)48.4

BC_CT_1644(Bra025524)48.6BC_CT_1589(Bra025534)49.0BC_CT_1639(Bra025556)49.2BC_CT_1640(Bra025550)49.2BC_CT_1641(Bra025548)49.4BC_CT_1645(Bra025554)49.4BC_CT_1590(Bra025576)49.5BC_CT_1638(Bra025597)BC_CT_1591(Bra025595)50.0

BC_CT_1633(Bra025600)50.3BC_CT_1594(Bra025660)50.6BC_CT_1593(Bra025652)50.8BC_CT_1592(Bra025651)50.8BC_CT_1605(Bra028238)51.3BC_CT_1635(Bra028205)51.7BC_CT_1595(Bra028104)BC_CT_1598(Bra028119)51.9

BC_CT_1037(Bra032751)52.1BC_CT_1600(Bra028124)BC_CT_1039(Bra033478)52.2

BC_CT_1599(Bra028120)BC_CT_1597(Bra028112)52.2

BC_CT_1601(Bra028183)52.4BC_CT_1143(Bra032690)52.6BC_CT_1604(Bra028208)53.0BC_CT_1603(Bra028195)53.1BC_CT_1632(Bra028187)53.3BC_CT_1602(Bra028189)53.3BC_CT_1163(Bra039785)54.2BC_CT_1164(Bra039811)54.4BC_CT_1188(Bra014847)55.2BC_CT_1189(Bra014815)55.9BC_CT_1231(Bra014757)58.3BC_CT_1078(Bra014498)61.5BC_CT_1077(Bra014449)63.1BC_CT_1011(Bra014449)63.2

BC_CT_1282(Bra039326) 187.2BC_CT_1185(Bra040318) 186.3BC_CT_1280(Bra037656) 184.1BC_CT_1155(Bra037697) 182.5

BC_CT_1014(Bra016906) 177.8BC_CT_1235(Bra016925) 176.9BC_CT_1236(Bra016937) 176.3BC_CT_1237(Bra016957) 175.1

BC_CT_1187(Bra017140) 164.7

BC_CT_1015(Bra017189) 162.2BC_CT_1086(Bra017221) 160.5

BC_CT_1021(Bra021922) 153.0BC_CT_1254(Bra021912) 152.6

BC_CT_1253(Bra021714) 141.6BC_CT_1109(Bra021713) 141.5

BC_CT_1630(Bra035667) 130.6BC_CT_1631(Bra035696) 128.5BC_CT_1629(Bra034386) 126.5BC_CT_1628(Bra034367) 125.5BC_CT_1627(Bra034366) 125.4BC_CT_1626(Bra034358) 125.0BC_CT_1625(Bra034343) 124.0Bra034340(CLAVATA3) 123.9

BC_CT_1624(Bra034315) 122.3BC_CT_1623(Bra034314) 122.2BC_CT_1622(Bra034303) 121.5BC_CT_1621(Bra034294) 120.8BC_CT_1619(Bra034279) 119.7BC_CT_1612(Bra032040) 116.8BC_CT_1613(Bra032046)BC_CT_1614(Bra032047) 116.1

BC_CT_1140(Bra032166) 108.0BC_CT_1616(Bra032169) 107.5BC_CT_1617(Bra032175) 106.9BC_CT_1606(Bra030196) 104.8BC_CT_1608(Bra030212) 103.0BC_CT_1609(Bra030249) 100.0BC_CT_1610(Bra030269) 98.4BC_CT_1186(Bra030275) 97.9BC_CT_1611(Bra030286) 97.2BC_CT_1646(Bra030331) 94.2BC_CT_1634(Bra030339) 93.8BC_CT_1647(Bra025489) 87.7BC_CT_1588(Bra025518) 85.4BC_CT_1642(Bra025520) 85.1BC_CT_1644(Bra025524) 84.8BC_CT_1589(Bra025534) 84.5BC_CT_1641(Bra025548) 83.0BC_CT_1640(Bra025550) 82.9BC_CT_1645(Bra025554) 82.8BC_CT_1639(Bra025556) 82.7BC_CT_1590(Bra025576) 81.0BC_CT_1591(Bra025595) 79.8BC_CT_1638(Bra025597) 79.5BC_CT_1633(Bra025600) 79.1BC_CT_1592(Bra025651) 76.1BC_CT_1593(Bra025652) 75.9BC_CT_1594(Bra025660) 75.2BC_CT_1605(Bra028238) 73.1BC_CT_1604(Bra028208) 70.6BC_CT_1635(Bra028205) 70.3BC_CT_1603(Bra028195) 69.1BC_CT_1602(Bra028189) 68.6BC_CT_1632(Bra028187) 68.4BC_CT_1601(Bra028183) 68.2BC_CT_1600(Bra028124) 62.9BC_CT_1599(Bra028120) 62.3BC_CT_1598(Bra028119) 62.2BC_CT_1597(Bra028112) 61.6BC_CT_1595(Bra028104) 61.2BC_CT_1143(Bra032690) 58.2BC_CT_1037(Bra032751) 52.5BC_CT_1039(Bra033478) 48.2

BC_CT_1163(Bra039785) 39.2BC_CT_1164(Bra039811) 37.4BC_CT_1188(Bra014847) 35.8

BC_CT_1189(Bra014815) 33.5

BC_CT_1231(Bra014757) 28.5

BC_CT_1078(Bra014498) 10.5

BC_CT_1077(Bra014449)BC_CT_1011(Bra014449) 6.9

A4 - Integrated Genetic Map A4 - Physical Map