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BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II http://www.science-groove.org/Now/Oxida tive.html

BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

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Page 1: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

BC368

Electron Transport Chain

CH 19 (pp 731-747)

March 19, 2015

Biochemistry of the Cell II

http://www.science-groove.org/Now/Oxidative.html

Page 2: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Last fall, Michael Phelps was pulled over in Baltimore after police spotted him driving erratically.

A Breathalyzer test revealed that Phelps’ blood alcohol content was 0.14, well over the 0.08 legal limit.

Case Study

Page 3: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Ethanol is oxidized; dichromate is reduced.

Reaction can be monitored through a color change of the chromium species.

Redox Reactions

2 Cr2O72-

+ 3 C2H5OH + 16 H+ --> 4 Cr3+ + 3 CH3CO + 11 H2O

Page 4: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Cr2O72-

+ 14 H+ + 6 e- --> 2 Cr3+ + 7 H2O

C2H5OH + H2O --> CH3COOH + 4 e- + 4 H+

Half Reactions

2 Cr2O72-

+ 3 C2H5OH + 16 H+ -->

4 Cr3+ + 3 CH3COOH + 11 H2O

Reduction (cathode)

Oxidation (anode)

Overall:

Page 5: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Half Reactions

In general,

’cell = ’cathode - ’anode

Higher tendency for reduction

Lower tendency for reduction

Reduced Oxidized

Standard reduction potentials are for reduction.

Page 6: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Cr2O72-

+ 14 H+ + 6 e- --> 2 Cr3+ + 7 H2O

C2H5OH --> CH3COOH + 2 e- + 2 H+

cell = 1.33 V - 0.058 V = 1.27 V

Half Reactions

Reduction (cathode); = 1.33 V

Oxidation (anode); = 0.058 V (for the reduction)

Page 7: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Half Reactions

In general,

’cell = ’cathode - ’anode

Reduced Oxidized

’cell > 0 is favorable

G’ = -nF’cell

Page 8: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

ATP is made through oxidative phosphorylation, powered by the free energy released from electron transfer from NADH to O2.

a) Given the following reduction potentials, calculate the available standard free energy from this process.

NAD+ + H+ + 2 e- NADH E’º = -0.32 V1/2 O2 + 2 H+ + 2 e- H2O E’º = 0.82 V

b) If three ATP’s are synthesized per electron pair transferred, what is the efficiency of the process?

In-Class Problem

Page 9: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

ETC Video

Page 10: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Chemiosmotic Mechanism

Electron transport chain sets up an H+ gradient (proton motive force).

Energy of the pmf is harnessed to make ATP.

Page 11: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

MitochondrionFig 19-2

Double membrane, with inner membrane very impermeable

TCA occurs in the matrix

ETC in the inner membrane

Page 12: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Cardiolipin

Page 13: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

The patient was delivered by emergency C-section at 31 weeks of gestation. He required intubation in the delivery room because of apnea and bradycardia and was treated in the Neonatal Intensive Care Unit. A follow-up chest X-ray taken at 1 month of age showed an enlarged heart and prompted a cardiology consult. Although there was no clinical evidenceof congestive heart failure, the cardiac ultrasound showed a significant decrease in left ventricular function. The family history was significant in that the patient’s maternal uncle died from sudden infant death syndrome.

At 11 months of age, the patient’s mother was concerned about his poor weight gain and development because he was not yet sitting alone.

Case Study

Page 14: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

At his 20th-month visit, persistent muscle weakness, growth delays, and congestive cardiomyopathy led the cardiologist to make a genetics referral. Two days following this clinic visit,however, the patient presented to his primary care provider with cough, wheezing, runny nose, and one day of fever and mental status change. His condition deteriorated, requiring intubation, and he was transferred to the Pediatric Intensive Care Unit. The diagnosis was pneumonia, and severe lactic acidosis was found. He failed to respond to aggressive treatment and died from repeated ventricular fibrillation that occurred 10 days later. Autopsy limited to the heart was performed. The gross and microscopic findings were characteristic of Barth syndrome. The heart weighed 100 g (average for his age is 56 g, and 100 g is the average for a 7-year-old).

Case Study

Page 15: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Case Study

Page 16: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

A small number of boys suffer from Barth syndrome (~50 births/year in the United States).

Patients with Barth syndrome have abnormal mitochondria and cannot maintain normal rates of ATP production. These patients develop life- threatening cardiomyopathy and muscle weakness.

Barth’s results from a mutation on the X chromosome in the gene coding for taffazin, an enzyme involved in the biosynthesis of cardiolipin.

Cardiolipin

Page 17: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Electron transport chain

Page 18: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

ETC carriers: Coenzyme Q

Fig 19-3

Mobile electron carrier within the bilayer

1- or 2-electron acceptor

Page 19: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

ETC carriers: FMN

Prosthetic group of ETC protein (complex I)

1- or 2-electron acceptor

Page 20: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

ETC carriers: Cytochromes

Heme proteins

Cytochrome c is a soluble peripheral protein

Most are integral proteins

Page 21: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

ETC carriers: Iron-sulfur proteins

Fig 19-5

Page 22: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

ETC carriers: Copper centers

CuA center CuB center

Page 23: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Electron Transport Chain: Proteins

Page 24: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Electron Transport Chain

~Fig 19-16

Page 25: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Complex I

Page 26: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Alternate Entries

Fig 19-8

Page 27: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Alternate Entries

Complex II (aka succinate dehydrogenase)

Page 28: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Alternate Entries

Fig 19-8

Page 29: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Alternate Entries

Fig 19-8

Page 30: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Electron Transport Chain

Page 31: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Complex III

Page 32: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Complex III

Fig 19-11

Page 33: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Electron Transport Chain

Page 34: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Complex IV

Fig 19-14

Page 35: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Complex IV

Page 36: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Electrons flow from carriers with low to high reduction potential.

Succinate dehydrogenase

Electron Transport Chain

This is energetically downhill.

Page 37: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Some carriers pump protons.

Succinate dehydrogenase

Electron Transport Chain4 H+ in

4 H+ in

2 H+ in

Per electron pair:

2 H+ out

4 H+ out

4 H+ out

Page 38: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Flow direction

Page 39: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Flow direction

Page 40: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Inhibitors of electron transport

Fig 19-6

Page 41: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Case Study

Four carriers (a, b, c, d) are required for respiration in a novel bacterial electron-transport system. In the presence of substrate and O2, three different inhibitors block respiration as shown. What is the order of carriers?

Inhibitor a b c d

1 + + - + 2 - - - + 3 + - - +

“+” = fully oxidized; “-” = fully reduced

Page 42: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Q Cycle

Page 43: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Q Cycle

Page 44: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Q Cycle

Page 45: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

O2 consumption as a measure of electron transport

An oxygen electrode can measure O2 consumption in respiring mitochondria.

Page 46: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

O2 consumption as a measure of electron transport

An oxygen electrode can measure O2 consumption in respiring mitochondria.

Substrate added

Substrate consumed

Page 47: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

O2 consumption as a measure of electron transport

An oxygen electrode can measure O2 consumption in respiring mitochondria.

Page 48: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Coupling of electron transport and ATP synthesis

Data can be reported as O2 concentration or O2 consumption.

Page 49: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Coupling of electron transport and ATP synthesis

Fig 19-20

Page 50: BC368 Electron Transport Chain CH 19 (pp 731-747) March 19, 2015 Biochemistry of the Cell II

Coupling of electron transport and ATP synthesis

Fig 19-20