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Hands-on Soil Infrared Spectroscopy Training Course Getting the best out of light 11 – 14 November 2013 Applications of soil spectroscopy on Land Health Surveillance Ermias Betemariam Erick Towett

Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

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Page 1: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Hands-on Soil Infrared

Spectroscopy Training Course

Getting the best out of light

11 – 14 November 2013

Applications of soil spectroscopy on Land Health Surveillance

Ermias Betemariam

Erick Towett

Page 2: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Context (i) • Soil comes to the global agenda:

– Sustainable intensification took soil as a x-cutting

– Global Environmental Benefits - land degradation and soils are among the priority global benefits (GEF/UNCCD)

• SOC as useful indicator of soil health

• Importance of soil carbon in global carbon cycle and climate mitigation

• carbon trading purposes requires high levels of measurement precision

• Increasing demand for soil data at fine spatial resolution

1 Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 3: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Context There is a lack of coherent and rigorous sampling and assessment

frameworks that enable comparison of data (i.e. meta-studies) across a wide range of environmental conditions and scales

Soil monitoring is expensive to maintain Soil degradation and loss is a challenge High spatial variability in soil properties- large data sets reduce

uncertainty

Context (iI)

High spatial variability of SOC can rise sevenfold when scaling up from point sample to landscape scales, resulting in high uncertainties in calculations of SOC stocks. This hinders the ability to accurately measure changes in stocks at scales relevant to emissions trading schemes (Hobley and Willgoose, 2010)

Soil spectroscopy key for Land Health Surveillance

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 | 2

Page 4: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Land Health (SD4)

Land Health - the capacity of land to sustain delivery of essential ecosystem services

Land health surveillance aims to provide statistically valid estimates of land health problems, quantify key risk factors associated with land degradation, and target cost-effective interventions to reduce or reverse these risks.

3 Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 5: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Land Health Projects

No. Name of project

1 Africa Soil Information Service (AfSIS)/Africa Soils (SSA)

2 Strengthening capacity for diagnosis and management of soil micronutrient deficiencies (SSA)

3 Soil monitoring protocol for the World Bank Living Standards Measurement Study (Ethiopia & ..)

4 Carbon sequestration options in pastoral & agro-pastoral systems in Africa (Burkina Faso & Ethiopia)

5 Land health surveillance for high value biocarbon development (Kenya, Burkina Faso & Sierra Leone)

6 Land health surveillance system for smallholder cocoa in Ivory Coast

7 Trees for food security in Eastern Africa (Rwanda, Ethiopia, Burundi & Uganda)

8 Land health surveillance for mitigation of climate change in agriculture (Kenya & Tanzania)

9 Land health surveillance system in support of Malawi food security project (Malawi)

10 Land health surveillance system for targeting agroforestry based interventions for sustainable land productivity in the western highlands of Cameroon

11 A Protocol for Measurement and Monitoring Soil Carbon Stocks in Agricultural Landscapes

Land Health Projects (i)

4 Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 6: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

5

Land Health Projects (ii)

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 7: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Land Health out-scaling projects (iii)

Tibetan Plateau/ Mekong

Parklands Malawi

National surveillance systems

Regional Information Systems

Project baselines

Rangelands E/W Africa SLM Cameroon MICCA E. Africa

Global-Continental Monitoring Systems

Evergreen Ag / Horn of Africa

CRP5 pan-tropical basins AfSIS

EthioSIS- Ethiopia

6

Cocoa - CDI

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 8: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

AfSIS ✓60 primary sentinel sites

➡ 9,600 sampling plots ➡ 19,200 “standard” soil samples ➡ ~ 38,000 soil spectra

AfSIS: Soil functional properties (1)

7

EthioSIS 97 Sentinel sites

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 9: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

AfSIS: Soil functional properties Spectral diagnostics tools can be used to

produce soil maps

Prediction map for soil organic carbon for

sub-Saharan Africa. (Source: Africa Soil Information

Service)

8 Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 10: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

AfSIS: Soil functional properties

From polygon-based to probabilistic mapping

+

Probability of observing

cultivation Current lime requirement ? ~ min

[prob(pH < 5.5), prob(cult)]

Probability topsoil pH < 5.5

... very acid soils

Grid-based probabilistic maps increases the reliability of the map and its power to be combined with other data sources (remote sensing & terrain data)

(Walsh, 2013)

=

Taxonomic soil classification systems provide little information on soil functionality in particular the productivity function (Mueller et al 2010)

9 Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 11: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Living Standards Measurement Study-LSMS-IMS (3) Improve measurements of agricultural productivity through methodological validation and research

Mobile phones for quick soil screening- being tested

10

Low cost MIR soil testing for smallholder farmers

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 12: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Carbon sequestration in pastoral & agro-pastoral systems (4)

Effects of range management on soil organic carbon stocks in savanna ecosystems of Burkina Faso & Ethiopia

Fire (controlled burning -19 years) – Burkina Faso

Grazing (Exclosures 12- 36 years) – Ethiopia

Fire influence: • Carbon allocation - SOC gain • Decrease input - SOC loss

11

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 13: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Results No Sig difference in SOC between burned and unburned plots

12

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 14: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Results

No Sig difference in SOC between burned and unburned plots

13

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 15: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Results

No sig. difference in SOC between closed and open plots for all age categories

14

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 16: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Challenges in cocoa production Biocarbon development in East and West Africa (5) • Develop effective and cost efficient carbon monitoring, reporting and

verification systems that can enable smallholders to access carbon markets

• Soil spectroscopy will be key component

Estimating biocarbon using LiDAR data- Taita, Kenya (a) indigenous forest, (b) mixed stand of local and exotic species (Eucalyptus sp.) and (c) cropland with scattered trees

Janne et al., 2013

15

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 17: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Smallholder cocoa in Ivory Coast-V4C (6)

Disease + pest?

Soil fertility?

Major challenges

LDSF and soil spectroscopy to

identify constraints & target

interventions in cocoa production

16

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 18: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Trees for food security –ACIAR

Rwanda

Ethiopia

Characterize land health constraints and assessing Agroforestry intervention outcomes

17

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 19: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Mitigating Climate Change in Agriculture-MICCA (8)

East African Dairy Development

(EADD- Kenya)

Conservation agriculture

(CARE- Tanzania)

Characterize (baseline) and assess impacts of climate smart agriculture practices

18

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 20: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Measurement and Monitoring Soil Carbon Stock (11)

Can we measure soil carbon cost effectively?

19

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 21: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Land Health Surveillance

Consistent field protocol

Soil spectroscopy Coupling with remote sensing Prevalence, Risk factors, Digital

mapping

Sentinel sites

Randomized sampling schemes

20

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 22: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Measurement and Monitoring Soil Carbon Stock (11)

Why measure

carbon? 1

What will the

protocol deliver? 2

3 How much will it

cost?

4 Sampling

5 Field work

6 Lab work

7 Data analysis

8 Presenting results

21

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 23: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Sample size determination

Sample allocation Moisture content

Soil Carbon stock Error

Measurement and Monitoring Soil Carbon Stock (11)

Web and excel based tool

…. and reporting

DATA INFORMATION KNOWLEDGE WISDOM

22

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 24: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

A management that leads to a DECREASE in bulk density will UNDER ESTIMATES SOC stocks & vice versa

C conc.(%) Depth(cm) Bulk density (g/cm) SOC stock (Mg/ha) Error

1.5 150 1.2 270 1.5 150 1 225 -16.67%

Monitoring SOC stocks

(Ellert and Bettany, 1995)

Bulk density as confounding variable in comparing SOC stocks

Think mass not depth

Why cumulative soil mass?

23

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 25: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

0

2000

4000

6000

10 50 100 150 200 250

Cost (U

SD

)

Number of samples

NIR spectroscopy

Thermal oxidation

Sample preparation

Soil sampling

0

3

6

9

12

15

Cost p

er

sam

ple

(U

SD

)

NIR spectroscopy Thermal oxidation

Sample preparation Soil sampling

Cost –error analysis

0

2000

4000

6000

8000

0 500 1000 1500

Co

st (

USD

)

Number of samples

Thermal oxidation

NIR spectroscopy

Comparisons of costs of measuring SOC using a commercial lab and NIR

Cost IR is cheaper (~ 56%) than dry combustion method for large number of samples

Throughput Combustion ~ 30-60 samples/day NIR ~ 350 samples/day MIR ~ 1000/day

Cost –error analysis

24

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 26: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Cost –error analysis

0.00

2.00

4.00

6.00

8.00

10.00

0 200 400 600 800 1000

Hal

f 9

5%

co

nfi

den

ce in

terv

al (

t C

ha-1

)

Number of samples

0.00

2.00

4.00

6.00

8.00

10.00

0 5000 10000 15000 20000

Hal

f 9

5%

co

nfi

den

ce in

terv

al (

t C

ha-1

)

Cost of carbon measurement (USD)

Cost –error analysis

Costs of measurement often exceed the benefits – soil spectroscopy address this challenge

25

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 27: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Activity Sources of uncertainty

Sampling Sampling design (random, stratified random)

Sample size

SOC measurement

Natural variability (spatial)

Sample preparation (e.g. contamination, subsampling)

Lab method used (instrument resolution)

Human error

Field data collection (e.g. soil mass, volume)

SOC prediction using IR

Imported uncertainties (from reference data)

Model (assumption)

Instrument and human errors

Mapping SOC

Covariates used

Image pre -processing (geometric and radiometric corrections)

Scale/resolution (e.g. farm vs landscape)

Model (assumption, strength)

Sources of uncertainty

26

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 28: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Common causes of measurement uncertainty

• the instruments used,

• the item being measured,

• the environment,

• the operator,

• other sources

27

CASE 1 High precision (repeatable) High accuracy Random error (less biased)

CASE 2 High precision (repeatable) Low accuracy Systematic error (biased)

CASE 3 Low precision (not repeatable) High accuracy Random error (less biased)

CASE 4 Low precision (not repeatable) Low accuracy Systematic error (biased)

Accuracy versus precision

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 29: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Things to be careful!

Proper labeling Avoid contamination

Lets do it right

28

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 30: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Data archiving/publishing Datasaving – dataverse: http://thedata.harvard.edu/dvn/

29

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 31: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

• More research on cost-effective measurement tools

• Web services are needed that allow optimised soil information to be automatically exchanged via the internet

• Proximal soil sensing

• Reduce uncertainties in measurements- error propagates

• Develop national capacities, networking and partnership

• Baselines are established for important soil properties across Africa

• Soil spectroscopy filling the data gaps- at National, Regional & Global levels

• Enable decision makers have clear understanding of soil status and trends

• Spectroscopy is proved good- adoption and application

• Cross sentinel/regional sites analysis

Finally…

30

Ermias Betemariam, Erick Towett | Hands-on soil infrared spectroscopy training course | Nairobi | May 2014 |

Page 32: Applications of soil spectroscopy on Land Health Surveillanceworldagroforestry.org/sites/default/files...Land Health (SD4) Land Health - the capacity of land to sustain delivery of

Thank you