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Cell-wall active agents
• Penicillins– Narrow spectrum:
• penicillinase susceptible• penicillinase resistant
– Broader spectrum
• Cephalosporins– Narrow spectrum (1° generation)– Broader spectrum (2-4° generations)
• Carbapenems• Aztreonam• Vancomycin
Penicillins
• All derived from 6-aminopenicillanic acid and have -lactam ring
• Vary in resistance to stomach acid, polar, not metabolized easily
• usually excreted unchanged in urine both via glomerular filtration and tubular secretion (latter is inhibited by Probenicid)
• Ampicillin and nafcillin also excreted in bile• Procaine/benzathine forms of penicillin G injected i.m. to
give long half-life, otherwise plasma half life is short (30-60 min)
• Most only cross blood brain barrier when meninges are inflamed.
Penicillins• Bactericidal• Targets (peptidoglycan synthesis)
– Penicillin binding proteins (PBPs)– Transpeptidase– Activate some autolytic enzymes
• Resistance usually due to -lactamases – (esp. Staph and many Gram-negatives)
• Resistance also known via changing PBPs– (methicillin-resistance in Staph – (PenG resistance in pneumococcus)
• Porins mutations in Pseudomonas may allow resistance
Clinical use of penicillinsNarrow spectrum, penicillinase-susceptible drugs
penicillin G (parenteral – unstable in stomach acid)
penicillin V (given orally)
Used for streptococci, meningococcus, Gram-positive bacilli (Bacillus), Spirochetes (Treponema)
Resistance reported for
most Staph aureus,
many Neisseria gonorrhoeae
many Strep pneumoniae
Clinical use of penicillins (cont.)Very narrow spectrum, penicillinase-resistant agents
(methicillin)
nafcillin
oxacillin
Primarily used for infections by Staph. aureus and Staph. epidermidis
Resistance seen with MRSA and with some organisms making ESBLs
Clinical use of penicillins (cont.)
Broader spectrum, penicillinase-susceptible agents
Ampicillin and amoxicillin
Used for PenG susceptible agents
and for
enterococci, Listeria, E. coli, Proteus, Haemophilus influenzae, Moraxella catarrhalis
Used in combination with penicillinase inhibitors (e.g. clavulanic acid)
Synergy shown with aminoglycosides for Listeria and enterococci
Clinical useBroader spectrum, penicillinase-susceptible agents (cont.)
Piperacillin and ticarcillin
Active against several Gram-negative rods Pseudomonas, Enterobacter, some Klebsiella
Synergistic with main glycosides
Often used with penicillinase inhibitors
Clinical use of penicillins (cont.)
Toxicity of penicillins
Nausea, diarrhea are fairly common, especially with oral penicillins
Allergy (including anaphylaxis or induction of Type II and III reactions). Persons with allergy may be desensitized if necessary using a ~3-4 h rapid desensitization protocol
Methicillin may cause nephritisNafcillin may cause neutropeniaAmpicillin often causes a maculopapular rash. This can be
very pronounced if ampicillin is given to someone with mononucleosis (EBV) when this reaction is almost diagnostic for infective mononucleosis.
Cephalosporins
• Most administered parenterally• Many partly metabolized by liver but still usually
excreted in urine (like penicillins)• But cefoperazone & ceftriaxone (mainly via bile)• Most 1° and 2 ° generation do not enter CSF (even
if meninges inflamed)• Targets same as penicillins – i.e, bactericidal drugs• Tendency to be more resistant than penicillins to
-lactamases, but not to all. • Note: MRSA is resistant to cephalosporins
1st generation cephalosporins
Cefazolin (parenteral) and cephalexin (oral)– Used for Gram-positive cocci– Many E. coli and Klebsiella pneumoniae
NOT for – Gram-neg cocci– enterococci– MRSA, – most Gram-neg rods
Second generation cephalosporins
Extended coverage of Gram-negatives
Less coverage of Gram-positives
Diverse activity shown by different members
Cefotetan, cefotoxin (Bacteroides fragilis - anaerobe)
often resistant to ESBLs
Cefomandole, cefuroxime, cefaclor
(H. influenzae. M. cattharalis)
Third generation cephalosporins
Extended coverage of Gram-negatives
Enter CSF (except cefoperazone and cefiximine)
Resistance associated with extended spectrum beta-lactamases (ESBLs in Klebsiella and E. coli especially)
Active against several Gram-neg including Neisseria
ceftriaxone parenteral and cefiximine oral for gonococcus)
cefoperazone & ceftazidime active against Pseudomonas
One injection of ceftriaxone (~ 8h half life) usually effective for acute otitis media
Fourth generation cephalosporins
Cefepime –Expands coverage of 3rd generation to include activity against Gram+ found in 1st generation cephalosporins
–Used for penicillin-resistant pneumococci and for several -lactamase producing Gram-negatives including Enterobacter
Cephalosporins - Toxicity
•Allergy (cross-reactivity within cephalosporins as group)
•Some cross-reaction with penicillins•Pain at injection site•Phlebitis after i.v. administration•May increase nephrotoxicity of aminoglycosides•Disulfuram reaction with some (e.g. cefoperaxzone, cefotetan, cefamandole)
Other -lactams
•Aztreonam (a monobactam. Acts on PBP3)
–No activity on Gram-positive bacteria or anaerobes–Resistant to -lactamases produced by many Gram-negative rods including Klebsiella and Pseudomonas but not resistant to ESBLs.
–Synergistic with aminoglycosides–Prolonged half-life in renal failure
–No significant cross-allerginicity with penicillin
Other -lactams
•Imipenem, meropenem (carbapenems)
–Wide activity against Gram positive cocci, Gram-negative rods, and anaerobes
–Used with aminoglycoside for Pseudomonas infection–Resistant to ESBLs
–Imipenem is administered with cilastin to prevent inactivation by renal dehydropeptidase
CNS toxicity at high concn
Vancomycin• Bactericidal glycoprotein inhibiting cell wall formation• Binds D-Ala-D-Ala pentapeptide side chain to prevent
transpeptidation in growing peptidoglycan• Resistance in VRE and VRSA is due to change of one D-
ala to D-lactate• Narrow spectrum of use
– Mainly for MRSA, penicillin-resistant pneumococcus and C. difficile
• Eliminated unchanged in urine. Not absorbed from gut so only used orally for C. difficile
• Nephrotoxic, ototoxic, RED MAN syndrome with rapid infusion
P AmRNA
30S
50S
tRNA
aa-tRNA
X
Tetracyclines: Mode of ActionReversible binding to 30S ribosome subunit blocking aminoacyl-tRNA access to acceptor site (A site)
Tetracyclines• Drugs usually given orally and absorbed from small intestine
– BUT Interference of uptake by food, divalent and trivalent cations (Ca++, Mg+
+, Fe++, Bi +++, Al+++ ) in antacids, dairy products.
• Active against many Gram + and Gram – bacteria including anaerobes, rickettsiae, chlamydiae, mycoplasmae.
• Tigecycline has wider range. – Must be given i.v.– MRSA included, but NOT Pseudomonas nor Proteus
• Some tetracyclines act against protozoa and those filarial nematodes that have endosymbiotic bacteria– (e.g. doxycyline: Entamoeba and Plasmodium falciparum)
Tetracyclines
• Enter all body fluids well except CSF – (~10-20% plasma level)
• Actively excreted in bile and into feces– some enterohepatic circulation
• Also excreted in urine – But NOT doxycycline nor tigecycline
Tetracyclines toxicity
• Allergies• Minor effects on liver• Vestibular toxicity• Occasional photosensitivity• Kidney excretion means doses need to be watched in
renal failure
• Special effect on growing bones • Enter breast milk and cross placenta• Chelation with calcium causes binding to growing
bones/teeth - damage
23
Tigecycline (Tygacil)
• Became available 2005• Has very broad spectrum of activity including
– MRSA, VRSA, VISA, and coagulase-neg Staph– Penicillin resistant and susceptible streptococci– Enterococci (including VRE)– Gram-positive rods– Enterobacteriaceae – Acinetobacter (multidrug resistant)– Anaerobes (Gram + and -)– Chlamydiae, rickettsiae, Legionella, – fast growing mycobacteria
• NOT effective against Pseudomonas or Proteus where the efflux pump is effective at removing it thereby causing intrinsic resistance.
Macrolides
• Erythromycin, azithromycin, clarithromycinOral bioavailability
Active against Campylobacter, Mycoplasma, Legionella, Gram-pos cocci, some Gram-negs
Erythromycin widely used for community acquired pneumonia
Macrolides
• Azithromycin – Concn in tissues and phagocytes higher than plasma.
Slow release allows once a week dosing (half life 2-4 days). Especially useful for chlamydial infections
• Clarithromycin – Used for Mycobacterium avium
Aminoglycosides
• Broad spectrum
Gentamicin
Amikacin
Tobramycin
Netilmicin
• Those with limited clinical application
Streptomycin
Neomycin
Kanamycin
Do not work alone on serious infections by enterococci orstreptococci but can increase antimicrobial activity of other drugs when used in combination for these infections
Mistranslation – one effect of aminoglycosides
puglisi.stanford.edu/research.html
Gentamicin in major groove of RNAat site where aa-tRNA interacts with mRNA. Distortion of ribosomal site by antibiotic causes misreading of codons.
Interaction is within the 30S subunit
Aminoglycosides
• Highly charged (polycations) and poor lipid solubility • Do not penetrate human cell cytoplasm well.• Generally given by i.v. or i.m. injection.• Mainly excreted in urine• Action independent of microbial concentration so very
useful for intrabdominal infections• Persistent suppression of microbial growth after dropping
to non-lethal level (post antibiotic effect)• High dose once a day is more effective and less toxic
than same amount split and administered in 3 doses per day
• Toxicity largely depends on time the drug remains above a toxic concentration
Aminoglycosides - Toxicity
• Neuromuscular blockade – binding calcium in presynaptic region – reversible with
calcium gluconate
• Nephrotoxicity – interference with tubular function including excess
loss of Mg and Ca: increased toxicity in combination with vancomycin, amphotericin B, diuretics, several others. Generally reversible
• Ototoxicity (auditory and vestibular) – non-reversible
Novel uses in the works for aminoglycosides
• Treatment of genetic disease in humans when caused by premature stop codon in gene.
Spectinomycin
• Similar structure to aminoglycosides
• Target is on 30S ribosome
• Used to treat penicillin-resistant Neisseria gonorrhoeae
Others (all act on 50S subunit)Chloramphenicol
Wide spectrum of activity. Significant toxicities. Inactivated by liver (liver action has low activity in newborn)Aplastic anemia (gray baby syndrome)Restricted uses (e.g. serious rickettsial infections)
Clindamycin (a lincomycin) MLSB resistance knownWorks like macrolidesBacteroides, several anaerobesIncreased danger of Clostridum difficile colitis
Quinupristin-dalfopristin MLSB resistance known Mixture of streptogramins VRE if Enterococcus faecium (but not E. faecalis)
LinezolidVRSA, MRSA, VRE (both E. faecium and E.faecalis)May cause mild thrombocytopenia and bone marrow suppression
Drugs affecting nucleic acid synthesis
• Folate inhibitors– Sulfonamides (derivatives of sulfanilamide
structural analog of p-aminobenzoic acid)– Trimethoprim, pyrimethamine
• DNA gyrase inhibitors– Quinolones
Spectrum of sulfonamides
Gram-positives and gram-negatives
Nocardia
Chlamydia
Some protozoa
Note: Sulfonamides stimulate rickettsial growth.
Poor activity against anaerobes
Adverse reactions of sulfonamides• Allergies• Photosensitivity• Nausea and diarrhea• Fever and skin rashes, exfoliative dermatitis• Steven-Johnson syndrome (<1% treatment courses)• Inactivation in part in liver• Crystalluria, hematuria (drugs and inactivated forms excreted in
urine and precipitate at acid pH)• Hematopoietic reactions
– Hemolytic anemia or aplastic anemia– Granulocytopenia, thrombocytopenia, leukemoid– Glucose-6-DH deficiency – enhanced hemolytic reactions
• If given in late pregnancy– Kernicterus (brain damage due to excess jaundice)
Trimethoprim (TMP)• Mainly excreted in urine• Good absorption orally. Lipid solubility enhances
distribution (more than sulfamethoxazole - SMX) including into CSF
• Extended use gives similar side effects to sulfonamides• Reduces length of sulfonamide treatment time when
used in combination with the sulfonamide• E.g. TMP-SMX for UTIs and Pneumocystis prophylaxis
• Pyrimethamine-sulfadiazine for Toxoplasma
Quinolones
• Interfere with DNA gyrase and DNA topoisomerase IV
http://www.web.virginia.edu/Heidi/chapter30/chp30.htm
Activity of fluoroquinolones
• Excellent activity against Gram-negatives• Lesser activity against Gram-positives but some
newer agents better– (e.g. ciprofloxacin maintained for anthrax)
• Bactericidal and have a post antibiotic effect
• Oral agents– Uptake inhibited up to 80% by coadministration
with Al and Mg-containing antacids. Some inhibition by calcium and ferrous ions.
• Most also available for i.v. administration
• Excreted in urine – except ciprofloxacin with 50% bile and 50% urine
Uptake of Quinolones
Indications for fluoroquinolones
lactam-resistant gonococcus Cystitis (where trimethoprim-sulfamethoxazole not useful)
Complicated ascending UTIs (ureter/kidney) Prostatitis (drugs concentrate in prostatic tissue) Single dose for gonorrhea (but resistance developing)
Pelvic inflammatory disease
Indications for quinolones
• Respiratory tract infectionsMany uses but may be need in combination with -lactams for severe pneumococcal pneumonia or with other drugs when Pseudomonas is likely (e.g. ventilators)
• Gastrointestinal infection– Very useful for Shigella (1 dose), Salmonella
(including typhoid), E. coli, cholera, Campylobacter (3-5 days). Resistance a concern
Adverse reactions of quinolones
• Nausea – vomiting - diarrhea• Some cause Q-T interval prolongation• May damage growing cartilage (not
recommended in under 18 year olds) but the damage appears reversible and the drugs are likely safe for some uses
• Tendinitis (rare in adults – main >50 years) Usually starts in Achilles tendon - can lead to tendon rupture
• Probably should be avoided during pregnancy since safety not shown
45
Metronidazole (Flagyl®)H3C
No net charge at physiological pH. Small molecule enters cells. Very good bioavailability, can be given orally
Effective on most obligate anaerobic bacteria including Clostridium difficile, and Gardnerella vaginalis but NOT useful for most Actinomyces spp. and all Propionibacteria (e.g. P. acnes).
Effective against anaerobic protozoa (Trichomonas, Giardia, Entamoeba)
Activated after being reduced by ferredoxin
Redox potential produced by aerobically growing bacteria not low enough to activate the drug.
46
Ferredoxinred
Ferredoxinox
Metronidazole
Short-lived intermediates
R-NO2 + e- → R-NO2-●
R-NO2-● + H+ → R-NO2H●
2R-NO2H● → R-NO2 + R-N(OH)2
R-N(OH)2 → R-NO + H2OR-NO + e- → R-NO-●
R-NO-● + H+ → R-NOH●
R-NOH● + R-NO2H● → R-NHOH + R-NO2
R-NHOH + 2e- + 2H+ → R-NH2 + H2O
Free radicals (●) fragment DNA.
The intermediatesproduced by reduction of the –NO2 group are the active form of the drug
Treatment of mycobacterial diseases
• Problems
• Waxy cell walls (inhibiting drug diffusion)
• Bacteria live both extracellular and intracellular
• Slow growth (drugs must be used for long periods)
• Many drugs only work for one or a few species
Active disease should be treated using combination therapy with multiple drugs
48
Tuberculosis
• All first line agents except ethambutol are all hepatotoxic and when used together have heightened hepatotoxicity
• Streptomycin (no longer first line because resistance is fairly common) is not hepatotoxic
• Treatment using first line agents becomes modified based on:– Pre-existing hepatitis– Pre-existing drug resistance
49
First line agents
• Isoniazid (INH) – Targets cell wall fatty acid synthesis– Only for Mtb (not used for other mycobacteria)– Requires activation by Mtb catalase-peroxidase– Used alone in treatment of PPD-positive persons with
latent TB infection (i.e., no active disease)– Resistance when Mtb that have lost catalase gene– Resistance shown by Mtb with altered INH targets– Liver toxicity increases with age– Other toxicities include peripheral neuropathy (often
reversible by vitamin B6), lupus-like syndrome (~1% of persons though 20% develop anti-DNA)
50
Other first line agents against Mtb• Rifampin (RIF)
– Good at inhibiting and killing bacteria – Used for other mycobacteria including M. leprae– Used for HIV-associated Mtb– Induces acetylating enzymes in liver thus reducing its
activity as treatment continues– Hepatotoxicity, itching, and orange staining of secretions
are most common side effects– Significant drug interactions (including cyclosporine,
contraceptives …) since it induces many cytochrome P450 isoforms.
– Can’t be used with AZT (zidovudine) since it upregulates the glucuronyl transferase that inactivates AZT.
– Also used for prophylaxis of contacts of children with active H. influenzae type b disease
51
• Pyrazinamide– Most hepatotoxic of first line agents– Good killing within macrophages and in caseous lesions– Not effective at alkaline or neutral pH– Deaminated in bacteria to make inhibitor of fatty acid
synthase. – M. bovis is resistant (amino acid substitution in deaminase)– Polyarthraligia and hyperuricemia are main side effects
• Ethambutol– Inhibits cell wall arabinogalactan formation– No liver toxicity– Significant toxicities include retrobulbar neuritis affecting
visual acuity and severe skin reactions52
Other first line agents against Mtb
Streptomycin
• One of numerous second line agents
• Aminoglycoside works extracellularly only
• Toxicities include ototoxicity, circumoral parathesias
• Toxicity noted especially for Cranial nerve VIII
• Not hepatotoxic
53
Other mycobacteria
• Dapsone – sulfonamide-like inhibits folate synthesis
– Used in Multiple Drug Therapy to prevent resistance arising.
– Typically dapsone is used with rifampin and clofazimine in leprosy
54
Other mycobacteria
• Azithromycin or clarithromycin (macrolides)– Prophylaxis for M. avium when CD4<75/l– Azithromycin has elimination half life ~3 days
(i.e. once-a week dosing is possible)
55
57
Resistance limits usefulness of antimicrobials Need to identify isolates and also test for resistance
1. Intrinsic resistance in some species (no target)
2. Development of resistance• Blocking entry of antibiotic or upregulating export pumps• Mutation or enzymatic modification of target• Overexpressing target or upregulating alternative pathway
bypassing target• Modifying antibiotic directly to inactivate it• Failing to activate antibiotic.
58
MIC – a quantitative measure of susceptibility
Minimum inhibitory concentration (MIC) Measures concentration of drug that prevents growth in vitro (does not necessarily kill bacterium) when tested over a set period, usually 1 day.
MIC is an intrinsic property of the bacterium. It stays the same regardless of site of infection (unless strain develops resistance).
Therapy should be chosen to so the concentration of drug in the areas of infection exceeds the MIC
59
Significance of MIC for clinical practice
• When the MIC for an antimicrobial is greater than safe therapeutic concentration, bacteria are resistant
• When the MIC is below the safe therapeutic level, bacteria are susceptible
• An increase in MIC points to resistance developing
60
MIC determination - Tube dilution assay Bacterium, growth medium and drug added to each tube
incubated 24 h
16 8 4 2 1 0.5 0 Concentration of drug in tube (g/ml)
MIC = 1 g/m
l
Susceptible isolate (Drug only toxic above 6 g/ml)
61
Tube dilution assay - resistant isolateIsolate is resistant because drug is toxic above 6 g/ml)
16 8 4 2 1 0.5 0 Concentration of drug in tube (g/ml)
MIC = 8 g/m
l
62
MIC from antibiotic diffusion in agar
Kirby-BauerInoculation of plate with clinical isolate. Antibacterialdisks are placed on surface. Plates incubated~24 h to allow bacteria to form a lawn
AB
C
Zone around antibiotic disc showing no bacterial growth due to presence of antibacterial diffusing out of disk. Antimicrobial is most concentrated at disk
64
E-TEST® agar diffusion MIC determination
Continuous scale - not just doubling dilutions.
Expensive
Surrogate tests
• Numerous types: tests with one drug to predict response to another
– E.g. 30 g cefoxitin disk for oxacillin-resistant Staph. aureus (i.e. MRSA)
– Cefoxitin induces mecA (PBP2a) more effectively than oxacillin in those MRSA that are not constitutive producers of PBP2a
65
66
Macrolide - Lincosamide - Streptogramin B resistance
• Staphylococcus aureus – Erythromycin R– Clindamycin S
• This result could hide potential to express clindamycin resistance (MLSB pattern) due to methylase.
• Erythromycin far better inducer of methylase than is clindamycin
• If resistance to clindamycin induced by erythromycin (D-test), this points to MLSB resistance
67
Measuring bactericidal activity
• MBC (minimum bactericidal concentration) – concentration needed to ensure all bacteria killed
• Specialty test, only occasionally used when patients lack residual immunity, or when infection may require bactericidal levels such as in endocarditis/osteomyelitis
68
Extended spectrum -lactamases ESBLs
Over 340 different -lactamases in Gram-negative rods.
Some have very limited substrate activity
e.g. the plasmid-mediated penicillinases with little activity against cephalosporins
SHV-1- ~ 100% Klebsiella pneumoniae isolates (confers R to ampicillin+ticarcillin)
TEM-1 - ~ 50% (currently ) E. coli isolates (confers R to ampicillin).
Mutations in the genes for SHV-1 and TEM-1 → extended-spectrum -lactamases (ESBLs)
ESBLs have activity against ALL the penicillins, most cephalosporins, and aztreonam.
Most common in Klebsiella pneumoniae, K. oxytoca, E. coli but also in other Gram-negatives
Many microbes exist in complex communitiesTherapeutic alterations to “microbiota”
• Antibiotics Chemicals directly targeting (inhibiting/killing) microbes
• PrebioticsNon–digested ingredients that selectively stimulate one or
a group of bacteria in the colon: e.g. lactulose used to reduce ammonia
• ProbioticsLive organisms, which when administered in adequate
amounts, confer a health benefit on the host
69
Targeted antibiotics
Bacteriophages
Increasing interest in bacteriophages to attack biofilms and at other sites.
Many are highly species-specific
Many bacteria attacked by a large number of different bacteriophages suggesting several targets
Rapid lysis of cell wall bright about by murein (peptidoglycan) hydrolases produced during infection (similar structures to bacterial peptidoglycan hydrolases)
70
Lysins produced during intracellular growth by bacteriophages
Hermoso et al., Current Opinion in Microbiology 2007, 10:461-472
Lysins transferred to wall via pores (holins) produced by phage during infection.Pure lysins can act at outside of bacterial cell
71
Potential problems of bacteriophage therapy
1. Narrow host range of most lytic phages
2. Bacteria can become resistant
3. Antibody responses may neutralize activity
4. Pharmacokinetics not easy
5. Potential to mobilize and transfer genes
Use of phage lytic enzymes appears to avoid most of these problems. Resistance does not seem to develop
72
Probiotics
“Live organisms, which when administered in adequate amounts, confer a health benefit on the host.”
Bacteria must be able to adhere and colonize and work within context of a biofilm
Indications suggest usefulness in halitosis and maybe caries (tooth decay)
Strong evidence for value in pouchitis following ileal pouch-anal anastomosis
73
Fecal flora therapy in relapsing Clostridium difficile colitis
• 5% of C. difficile colitis do not respond permanently to treatment with metronidazole or vancomycin and develop a relapse
• Fecal flora replacement with non-C. difficile donor has been reported effective– More research needed
74
Microbial intestinal flora may prime for allergic responses
• Antibiotic-treated and Candida colonized mice
•Noverr et al. Infect. Immun. 2005;73:30-38
Cefoperazone5 days
± Candida albicans orally
antigen/spore lung challenge for 2-3 weeks
75
Candida in intestinal flora may prime for allergic responses in lung (response is IL-13 dependent)
Mice treated with cefoperazone Mice treated with cefoperazone for
for 5 days No Candida 5 days and colonized with C. albicans
•Noverr et al. Infect. Immun. 2005;73:30-38
Challenge with
Aspergillus spores4 times in 12 daysafter Candida
Ovalbumin6 times in 21 daysafter Candida
increased IgE, goblet cell metaplasialung eosinophils 76
Antibiotics and asthma in humans
• Antibiotic usage changes microbial flora in intestine and changes stay for significant time –– More clostridia and Candida (stimulatory lipids)– Less lactobacilli (butyrate, anti-inflammatory)
• Possibly allows increased chances of developing asthma
• Several papers suggest antibiotic use early in life is a risk factor for asthma
• Suggestion that probiotics given infant may reduce tendency to develop asthma (some data)
77