Affymetrix microarray analysis by using Cmap

By NFU Biology Algorithm lab

What is Connectivity Map

• The Connectivity Map is a collection of genome-wide transcriptional expression data from cultured human cells treated with bioactive small molecules and simple pattern-matching algorithms.

• The discovery of functional connections between drugs, genes and diseases through the transitory feature of common gene-expression changes.

DEMO

Step 1: Register as a new user .

DEMO(Cont)

Step 2: Click the quick query

DEMO(Cont)

Step 3 : upload the up tag and down tag file

The tag file type has been Affymetrix microarray id and Change the file extension to “.grp”

Result

Step 4: Click view results now.

Result(cont)

Download result form hereDrug name Drug name and cell with cancer typeCancer type

Producer by National Formosa University Biology Algorithm lab

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