Embed Size (px)
DESCRIPTION
25.47 – – – – – – – – – – – – – – – – – – Un – – – – – – – – – – – – – – – – – – – – – – – – – – – – human rat mouse dog cow chicken HSA 2 opossum
Citation preview
Additional file 1:
Summary of E-painting results for human chromosomes 1-22. The human chromosome coordinates of the breakpoint intervals are given to the right of the human ideogram in Mb.
The chromosome numbers of the orthologous segments in the analyzed species are indicated to the right of the conserved segments. Chromosomal breakpoints have been evenly spaced in order to facilitate visualization of the conserved syntenic segments. The resulting ideograms of the chromosomes and conserved segments are therefore not drawn to scale. The centromeric region is indicated by a black horizontal bar. The stippled red lines indicate breaks present in all analyzed vertebrate genomes which may therefore be attributed to rearrangements in the primate lineage.
human
rat mouse
dogco
wch
icken
10.38 – 10.39
5
16.05 – 16.08
16
22.99 – 23.09
21
33.63 – 33.652
2
41.84 – 42.2923
43.09 – 43.30
311 21
53.00 – 53.00
153
53.64 – 53.6812
67.23 – 67.34
5 4
67.61 – 67.88
5
68.01 – 68.284 6
89.56 – 89.562 3
93.54 – 93.63514
109.30 – 110.24
8
111.70 – 111.70
6
115.59 – 115.9026
119.83 – 119.971
121.10 – 141.30142.78 – 142.90
8
143.08 – 143.2210
146.67 – 146.691
149.94 – 150.14
17
154.62 – 154.787
155.14 – 155.18
2 3
158.43 – 158.47
25
163.57 – 163.61
388
166.29 – 166.291164.90 – 165.24
3
183.69 – 186.80
7
193.45 – 193.5238
197.56 – 197.67
8
199.88 – 199.8832
199.89 – 200.00
7
203.17 – 203.2038
206.37 – 206.39
26
211.80 – 212.137
219.91 – 220.2138
222.90 – 223.12
3
223.81 – 224.23
13 1
7
16
14
224.99 – 225.1810 11 14 7 2
228.01 – 228.8428
229.83 – 230.8211
231.62 – 231.62
19 8
236.40 – 236.5817 13
428
243.42 – 243.7913 1 7 16
244.10 – 244.1610 11 8
245.541 7 14
7
3
un
HSA 1
opossum
01.85 – 02.2801.27 – 01.30
42
4
2
6
2
25.47 – 26.3212
28.94 – 28.955
38.21 – 38.43
3
40.57 – 42.1942.90 – 42.90
17
43.73 – 43.78
1114
44.13 – 44.3115
50.49 – 53.81
617
68.54 – 68.6114 11
68.79 – 68.91
3
71.13 – 71.21
10
22
73.82 – 73.974
75.34 – 75.63
22
76.58 – 76.5834
91.60 – 94.70
64
95.21 – 95.2414
96.46 – 96.623 2
17
97.81 – 97.83
Un
106.27 – 106.88
1
108.46 – 108.52
9
17 1
110.02 – 110.2020 10
10
112.81 – 112.963
113.72 – 114.193 2 17
11
14
125.39 – 127.1313 1
127.82 – 127.957
128.50 – 128.5718 18
132.07 – 133.009
9
138.27 – 138.5613
1
188.24 – 188.983 2153.44 – 154.55
19
189.70 – 190.1336
220.33 – 222.11
7
224.73 – 225.07
37
233.47 – 233.47
2
234.16 – 234.17
9
238.73 – 238.757
238.98 – 239.109
240.68 – 240.807
243.6
9 1
253
9
96.64 – 96.68
1
74.82 – 74.9774.35 – 74.53
5
1
7
1
131.94 – 131.96
4
3
201.28 – 201.51
4
230.76 – 231.40
7
2
238.89 – 238.937
241.29 – 241.37
2
7
human
rat mouse
dogco
wch
icken
HSA 2
opossum
10.30 – 10.3022
10.47 – 11.289
12.18 – 12.7522
12.86 – 13.00
4 6 20
15.12 – 15.22
822
12
16.32 – 16.3316 14
20.20 – 21.449 17
1
26.73 – 27.1327
27.47 – 27.7315 14
44.47 – 44.73
23
45.16 – 45.41
2
44.87 – 44.88
48.24 – 48.42
22
9
52.30 – 52.33
8 9
57.89 – 57.9716
63.98 – 64.0515
14
74.62 – 77.174 6
2022
12
88.27 – 88.2831
90.60 – 95.00
102.71 – 102.76
1
103.60 – 103.6411
122.75 – 122.977
1123.14 – 123.19123.72 – 123.73
1
127.18 – 127.21
11 1633
7
1
127.86 – 128.777
130.52 – 130.5822
131.18 – 131.64
4 6 208
12
134.86 – 135.012
139.50 – 139.559
139.83 – 139.867
148.62 – 149.90
8 9
150.90 – 150.94
1
151.17 – 151.6121
159.93 – 160.00
23
184.30 – 184.32
2 3
194.76 – 195.60
34
199.33
11 16
33
1
9
6
33.16 – 33.40
8
39.21 – 39.286
42.28 – 42.518
42.89 – 42.926
46.23 – 46.45
8
6
99.80 – 99.93
7
4
6
8
142.50 – 142.68
4
184.47 – 184.69187.79 – 187.81
7
274
human
rat mouse
dogco
wch
icken
HSA 3
opossum
192.00
00.99 – 00.99Z
41.11 – 41.203
49.40 – 52.5074.30 – 74.64
6
74.85 – 74.9728
75.69 – 76.76
13
89.43 – 89.43
14 5
95.62 – 95.734 6
100.37 – 100.37
32
100.71 – 100.7912
106.75 – 106.94
6
107.25 – 107.3229
120.91 – 121.34
2 332
122.66 – 122.666
123.15 – 123.45
4 6
141.00 – 141.622 3
144.75 – 144.79
19
149.72 – 151.3619 8
163.44 – 164.412 3
167.38 – 169.38
17
169.74 – 169.79
15
176.27 – 176.9325
816 8
16 27
45
human
rat mouse
dogco
wch
icken
HSA 4
opossum
01.69 – 01.851
07.96 – 09.1017
13
14.75 – 15.67
34
31.59 – 31.68
2
32.82 – 33.48
20
35.27 – 35.6519
42.85 – 43.56
15
45.80 – 49.6054.37 – 54.43
4
74.20 – 74.362
20
76.30 – 76.36
Z
78.46 – 78.6113
79.53 – 79.74
10
96.28 – 96.30
2
13
98.29 – 99.901 17
102.64 – 102.911
102.93 – 106.74
Z
110.03 – 110.1017
7
112.29 – 112.88
3
112.96 – 113.73
10
114.99 – 115.45
10
127.90 – 128.33
Z
129.55 – 130.53
18 18
10
134.09 – 134.1010 11
137.12 – 137.1717 13
138.69 – 138.71
11
147.57 – 147.672
7
148.01 – 148.1918 18
150.26 – 150.38
19
167.89 – 167.927
171.81 – 172.1311
172.13 – 172.1920
172.59 – 172.6717
173.47 – 174.08
10
113
175.71 – 175.7310
176.91 – 176.95
4
176.97 – 177.3517 13
180.01 – 180.55
13
180.8310 11
117
16
110.49 – 111.09
9
111.12 – 111.51
3
6
114.91 – 114.943
122.78 – 124.006
130.76 – 130.79
3
1
2
human
rat mouse
dogco
wch
icken
HSA 5
opossum
25.81 – 28.98Histone Cluster
2
29.16 – 29.18
17 1335
29.76 – 29.8030.02 – 30.14
12
30.29 – 30.4035
33.49 – 33.65
16
35.55 – 35.5526
36.31 – 36.3732
37.25 – 37.4326
39.16 – 39.18
20 17
39.40 – 39.4115 14
40.66 – 41.12
3
42.27 – 42.2826
49.81 – 49.91
17
52.74 – 52.76
9
1
55.85 – 56.438 9
58.70 – 61.9063.05 – 63.40
23
74.03 – 74.19
9 1
86.41 – 87.858 9
100.17 – 100.945 4
108.06 – 108.47
9
109.11 – 109.5211
116.68 – 116.71
12
123.17 – 123.36
20
131.65 – 131.94132.11 – 132.17
1
12
154.92 – 155.15
10
169.91 – 169.921
170.08
1
1712
9
3
3
2
human
rat mouse
dogco
wch
icken
HSA 6
opossum
06.64 – 07.0512 5 6 25 14
12.23 – 12.384 6
22.01 – 22.546 12
23.01 – 23.065
32.88 – 32.916
36.27 – 36.338 9
37.55 – 37.66
14
43.62 – 43.6817 13
47.76 – 47.80
18
16
55.05 – 55.21
14 11
55.53 – 55.644 6
18
4 2
57.80 – 61.7075.90 – 76.40
12
5
6 25 19
84.40 – 85.9218
86.49 – 86.621
92.11 – 92.4097.15 – 97.26
4
614
42
99.11 – 99.1214
99.92 – 99.92un
100.48 – 100.559
101.85 – 101.98
125
6 25
19
104.80 – 104.844
107.76 – 107.8018
111.71 – 112.006 12
120.09 – 120.22
4
120.63 – 121.1129
122.43 – 122.694
123.20 – 123.9824
126.63 – 126.81
1
128.40 – 128.42un
129.74 – 130.4714
133.72 – 133.79
14
143.54 – 143.591
150.00 – 150.08
6
156.71 – 156.835
158.50
4
6 12
16
4
2
4
6
30.32 – 30.41
8
6
44.70 – 44.801
6
2
8
6
2
8
human
rat mouse
dogco
wch
icken
HSA 7
opossum
00.48 – 00.6025
01.72 – 01.7637
05.76 – 06.28
un
07.87 – 08.21
3
09.68 – 09.95
16 816
274
11.76 – 12.0315 14 25 3
14.46 – 15.44
83
19.75 – 19.8427
20.16 – 21.59
816
26.78 – 27.1522
27.22 – 27.24
8
27.53 – 27.535
29.18 – 29.25
15 14
16
25
83
31.15 – 31.62
4
4
33.45 – 33.46Z
42.38 – 42.67un
43.06 – 43.08Z
43.50 – 47.50
16 8 16 27
4
50.00 – 51.4711 16
56.60 – 56.811
64.16 – 65.665
4
67.25 – 67.502 3
76.11 – 76.485 1
87.31 – 87.312 3
97.24 – 97.315 4
98.81 – 98.86
29
124.62 – 124.73
14
125.57 – 125.6217
146.20
7 1513
14
2
06.66 – 07.09
1
351
17.99 – 18.115
1
5
1
3
human
rat mouse
dogco
wch
icken
HSA 8
opossum
05.82 – 05.881
06.50 – 06.751 19
32.78 – 32.96
8
33.16 – 33.245
38.41 – 39.05
5 411
846.00 – 64.00
17 13
76.55 – 77.0277.88 – 78.08
16
79.57 – 81.77
1 19
5
91.79 – 92.05
Z
94.17 – 94.4012
96.88 – 97.08
17 13
1
98.10 – 98.13Z
100.43 – 100.872
108.78 – 108.78Z
109.31 – 109.622
112.73 – 112.99Z
120.56 – 120.61
4
121.21 – 121.54
11
8
138.3023
9 1117
89.34 – 89.45
6
3
6
1
human
rat mouse
dogco
wch
icken
HSA 9
opossum
03.82 – 04.862
05.90 – 05.9413
06.06 – 06.0914
15.05 – 15.131
27.57 – 27.83
2
32.68 – 32.78
17
18
35.14 – 35.3419 8
35.97 – 37.4517 18
2 13
2
39.20 – 41.804
45.61 – 45.644 6
28
48.06 – 48.364
51.56 – 51.6216 14
28
28
6
54.20 – 55.251 19
57.79 – 59.6326
26
59.80 – 59.8274.53 – 74.54
20 10
79.30 – 79.4115
88.94 – 89.2516
144
28
91.09 – 91.1626
120.93 – 121.2519
135.80
17
2826
8
1
human
rat mouse
dogco
wch
icken
HSA 10
opossum
01.01 – 01.2029
5
03.20 – 03.62
18
07.05 – 07.231
18.08 – 18.2115
25.06 – 26.31
1 7
295
51.40 – 54.7057.34 – 57.63
3 2
18
30.21 – 30.30
21
33.65 – 33.683
59.24 – 59.28
18
59.92 – 60.02
15
60.24 – 60.2821
65.15 – 65.1565.59 – 65.59
un
5
65.90 – 65.923
66.50 – 66.53un
68.46 – 68.50
19
70.94 – 71.32
18
5
75.60 – 76.05
29
15
76.41 – 76.4213
76.68 – 76.9815
89.07 – 89.51
1
7
93.55 – 93.9229
100.96 – 101.4215
101.61 – 101.772
110.09 – 110.84
1
123.12 – 123.1315
133.53 – 133.5329
134.615
58 9
24
100.51 – 100.89
21
00.82 – 00.8329
5
4
63.50 – 64.38
5
67.02 – 68.21
8
5
4
human
rat mouse
dogco
wch
icken
HSA 11
opossum
07.55 – 07.5551
08.58 – 08.6509.36 – 09.64
1
10.22 – 10.2616
32.42 – 32.55
4 6
32.94 – 33.4211 16
34.30 – 36.7046.39 – 46.65
1
53.27 – 53.63
15
53.93 – 54.32
27
56.26 – 56.62
7
74.19 – 74.1910
98.88 – 98.93
5
100.02 – 100.023
103.03 – 103.18
15
103.89 – 103.935
105.04 – 105.132
106.67 – 107.035
7
10
101
132.0012 5 26 17 15
8
3
human
rat mouse
dogco
wch
icken
HSA 12
opossum
25.52 – 25.6000.00 – 17.80
15 14
33.31 – 34.4112 5
40.14 – 40.403
25
51.23 – 51:3315
2
14
51.48 – 51.84
22
52.06 – 52.1216 8
25
9 1101.85 – 102.05102.35 – 102.49
1415
114.5016 8
22
12 1
4
45.58 – 45.607
4
7
human
rat mouse
dogco
wch
icken
HSA 13
opossum
00.00 – 18.0019.37 – 19.4619.57 – 19.74
1530
21.20 – 21.3915
23.99 – 24.04
10
24.17 – 24.35
15 1427
44.79 – 46.37
21
51.27 – 51.386 12
57.69 – 57.7415 14
90.32 – 90.65
10
104.79 – 104.85
5
106.70
8
218
6 12
24.05 – 24.111
human
rat mouse
dogco
wch
icken
HSA 14
opossum
00.00 – 18.20
26.24 – 27.002 1
30.57 – 30.69
1 7 321 10
41.30 – 41.313 2
105
42.74 – 42.7921
49.08 – 49.1467.35 – 67.49
10
68.18 – 68.749
71.97 – 72.0110
74.28 – 74.3021
74.98 – 74.9810
76.02 – 76.07
30
78.05 – 78.14
8 9
100.08 – 100.161 7
321
10
100.803 2 30 10 ?
41.26 – 41.26
41.38 – 41.4120
20.27 – 20.3817
1
human
rat mouse
dogco
wch
icken
HSA 15
opossum
00.16 – 00.1611
02.70 – 02.7414
03.01 – 03.0119
03.11 – 03.19
17
03.43 – 03.43un
16.14 – 16.15
10
16
28.13 – 28.7414
30.90 – 30.9015
31.45 – 31.98
1 7
6 25
19
35.00 – 45.006 12 8 un un
57.33 – 60.242
89.10
19 85
18 1145.52 – 45.55
15
6
1
human
rat mouse
dogco
wch
icken
HSA 16
opossum
03.77 – 03.859
06.68 – 06.84
19
08.23 – 08.28un
15.58 – 15.7418
16.65 – 16.7819
19.26 – 19.38
14
20.31 – 20.8419
22.00 – 22.2014
25.88 – 26.0819
5
26.31 – 26.4518
26.67 – 26.7419
27.72 – 27.8418
29.51 – 29.7127
33.18 – 33.7119
36.47 – 36.56
19
37.42 – 37.4223
45.71 – 45.77
27
46.60 – 46.603
52.45 – 52.5218
57.50 – 57.811927
59.40 – 59.4765.69 – 67.63 1869.96 – 69.97
9
71.08 – 71.103
73.61 – 73.6218
76.88 – 77.123
79.00
18
19
18
10 11
77.25 – 77.2677.47 – 77.49
318
05.05 – 05.132
7
2
18.18 – 18.3218.63 – 18.70
62626
2
human
rat mouse
dogco
wch
icken
HSA 17
opossum
00.57 – 00.9018 18
09.95 – 10.449 17
13.12 – 13.21
7
15.40 – 16.701
32.61 – 32.63
2
39.11 – 40.54Z
42.92 – 43.6214
46.07 – 46.58
7
55.52 – 56.19Z
56.19 – 57.31
1818
63.33 – 65.6813 1
75.9018 18
1
24
2
3
human
rat mouse
dogco
wch
icken
HSA 18
opossum
01.16 – 01.1828
01.45 – 01.51Z
04.17 – 04.18
7 10
06.94 – 06.97un
17
07.04 – 07.078 9
08.23 – 08.2612 8
08.70 – 08.797
08.81 – 08.90
28
12.44 – 12.508 9
14.75 – 14.7719 8
15.10 – 15.1310
15.97 – 16.047
17
un
24.01 – 32.7016 8
20 7
28
39.68 – 39.8611
41.09 – 41.0924
56.84 – 56.90
7
58.70 – 59.4117
63.70
1
7
1 18un
17
3
1
4
human
rat mouse
dogco
wch
icken
HSA 19
opossum
02.36 – 02.3920
03.01 – 03.04un
04.18 – 04.624
05.12 – 05.2322
05.97 – 05.973
13.75 – 14.2514
17.46 – 17.503
18.69 – 19.1414
23.35 – 23.373
23.50 – 24.40
24
25.16 – 25.1814
26.20 – 28.0023
3
36.64 – 36.70
13
37.10 – 37.1020
43.49 – 43.6013
43.72 – 43.7819
55.27 – 55.3413
55.42 – 55.603
62.40
3 2
24
13
20
02.40 – 02.581
03.59 – 03.665
1
human
rat mouse
dogco
wch
icken
HSA 20
opossum
42.30 – 42.4100.00 – 13.30
11 16
43.07 – 43.141
43.40 – 43.6628
44.01 – 44.01
17
44.51 – 44.53
1
45.12 – 45.139
46.90
20
10
31
1
7
4
2
human
rat mouse
dogco
wch
icken
HSA 21
opossum
00.00 – 14.4017.03 – 17.14
4 6 27 5 1
21.08 – 21.5711 16
23.16 – 23.2820
23.31 – 23.4410
27.48 – 27.4919
5
30.34 – 30.3411
30.83 – 31.1114
5
26 17 15
31.58 – 31.99107
34.27 – 34.3219 8 5
49.607 15
10 1
8
8
3
human
rat mouse
dogco
wch
icken
HSA 22
opossum
16
21
15
6
4
3
2
5
14 26
7
3810
11
8
19
28
17131
30
9
X3212
22
20
31
33
34
Z
18
3523
24
25
36
37
27
29
un
Colour code
