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a fast and simple model for protein structure prediction Benjamin Jefferys Lawrence Kelley Mike Sternberg

a fast and simple model for protein structure prediction Benjamin Jefferys Lawrence Kelley

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a fast and simple model for protein structure prediction Benjamin Jefferys Lawrence Kelley Mike Sternberg. structure simplification. Langevin modelling. Langevin modelling. springs. springs. backbone conformation. hydrogen bonds. hydrogen bonds. water. water. water. - PowerPoint PPT Presentation

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Page 1: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

a fast and simple model for protein structure prediction

Benjamin JefferysLawrence KelleyMike Sternberg

Page 2: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

structure simplification

Page 3: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

Langevin modelling

Page 4: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

Langevin modelling

Page 5: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

springs

Page 6: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

springs

Page 7: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

backbone conformation

Page 8: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

hydrogen bonds

Page 9: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

hydrogen bonds

Page 10: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

water

Page 11: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

water

Page 12: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

water

Page 13: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

sidechain interactions

Page 14: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

sidechain interactions

Page 15: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

sidechain interactions

Page 16: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 17: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 18: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 19: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 20: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 21: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 22: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 23: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

other applications

Page 24: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

acknowledgements

Lawrence Kelley and Mike SternbergAlex Herbert and Daniel ChubbStructural Bioinformatics GroupRichard Jefferys

3DSIG/ISMB presence

Laptop set today – films and protein art

Visual Reflections entry:Deliberately obfuscated visualisation of forces hypothesized to be important for protein folding in a TIM barrel domain