1
Nature © Macmillan Publishers Ltd 1998 8 K ey species groups that affect major eco- logical processes are vital components of community diversity. Many such key groups are found in the soil, including the mycorrhizal fungi that may connect plants into a functional “wood-wide web” 1 . Arbus- cular mycorrhizal associations are formed by fungi of the order Glomales with 90% of land plant families, and many arbuscular mycorrhizal fungi are thought to have a broad host range 2 . Here we show that, despite this broad host range, the divers- ity of arbuscular mycorrhizal fungi is strik- ingly low in arable sites compared with a woodland. The arbuscular mycorrhizal fungi that colonize roots cannot be reliably identified below the genus level except by molecular methods. We examined roots from five abundant woodland plant species at four sites within a broadleaved wood dominated by oak (Quercus petraea, colonized by ecto- mycorrhizal fungi), and sycamore (Acer pseudoplatanus, colonized by arbuscular mycorrhizal fungi), at Castle Howard, North Yorkshire, UK. Partial fungal small- subunit ribosomal RNA sequences were amplified, cloned and screened for differ- ences in restriction pattern by restriction- fragment length polymorphism (RFLP). We sequenced selected clones to determine their phylogenetic position (Fig. 1). For comparison, we sampled pea, maize and wheat crops on three farms within a 55-km radius of the woodland site. There are three families in the Glomales, represented in our samples by the genera Glomus, Acaulospora and Scutellospora, and these are readily distinguished as distinct sequence clusters (Fig. 1). Morphological studies confirmed that these three genera were present in these roots 3 . In arable sites, 92% of sequences represented Glomus mosseae or closely related taxa, whereas those from woodland were much more diverse (Fig. 1). This was true even though the arable sites were separated by up to 66 km and three host species were sampled. The combined woodland samples had a much higher diversity of RFLP types (Shan- non–Weiner H40.144) than the combined arable samples (H40.398). In both wood and field, we often obtained identical sequences from different plant species, sug- gesting that the broad host range exhibited by many cultured arbuscular mycorrhizal fungi 2 may also be realized in nature. Given the broad host range of some arbuscular mycorrhizal fungal taxa, the change in sequence composition and low diversity of the fungi in arable fields is probably not a result of plant monoculture per se, but reflects other aspects of the agro- nomic regime such as ploughing, fertiliza- tion or fungicide application. In all the arable fields, regardless of host plant or location, the dominant arbuscular mycor- rhizal fungal type was a putative G. mosseae not found in the woodland. This species sporulates abundantly and colonizes readily from spores, which may be more important in a field that is ploughed annually than in woodland 4 . Arbuscular mycorrhizal fungi differ widely in their biological properties, and presumably have several different roles in ecosystems 5 . The low taxonomic diversity of arbuscular mycorrhizal fungi in arable fields indicates that their functional contri- bution may be less there than in woodland. It has been suggested that low ecosystem diversity may be associated with impaired function 6,7 and reliability 8,9 . Our results show that microbes need to be considered in any assessment of the effects of agricul- ture on biological diversity and that inten- sive arable agriculture may be operating at minimum levels of diversity for at least one key functional group. T. Helgason, T. J. Daniell, R. Husband, A. H. Fitter, J. P. W. Young Biology Department, University of York, PO Box 373, York YO10 5YW, UK e-mail: [email protected] 1. Simard, S. W. et al. Nature 388, 579–582 (1997). 2. Smith, S. E. & Read, D. J. Mycorrhizal Symbiosis (Academic, San Diego, 1996). 3. Merryweather, J. & Fitter, A. H. New Phytol. 138, 117–129 (1998). 4. Clapp, J. P., Young, J. P. W., Merryweather, J. W. & Fitter, A.H. New Phytol. 130, 259–265 (1995). 5. Newsham, K. K., Fitter, A. H. & Watkinson, A. R. J. Ecol. 83, 991–1000 (1995). 6. Chapin, F. S. et al. Science 277, 500–504 (1997). 7. Tilman, D. et al. Science 277, 1300–1302 (1997). 8. McGrady-Steed, J., Harris, P. M. & Morin, P. J. Nature 390, 162–165 (1997). 9. Naeem, S. & Li, S. B. Nature 390, 507–509 (1997). 10.Simon, L., Lalonde, M. & Bruns, T. D. Appl. Environ. Biol. 58, 291–295 (1992). NATURE | VOL 394 | 30 JULY 1998 431 Ploughing up the wood-wide web? scientific correspondence Figure 1 Neighbour-joining phylogeny of arbuscular mycorrhizal fungal DNA sequences amplified from plant roots sampled at woodland (green letters) and arable (red letters) sites. Fungal sequences are identified by the host plant from which they were isolated. A, Ajuga; H, Hyacinthoides; E, Epilobi- um; G, Glechoma; R, Rubus (from the woodland site, sampled in July 1996). P, Pisum and Te, Triticum from Escrick; Th, Triticum from High Mowthorpe; Z, Zea from Bedale (arable sites, sampled at three time points during 1997). Orange branches corre- spond to the arbuscular mycorrhizal fungus family Glomaceae, purple branches to Gigaspo- raceae, yellow branches to Acaulosporaceae, and dark blue branches to the two taxa that do not clus- ter with any of these fami- lies. Partial small-subunit ribosomal DNA fragments of about 550 base pairs were amplified using Pfu DNA polymerase and primers NS31 (ref. 10) and AM1 (58-GTT TCC CGT AAG GCG CCG AA-38, designed to amplify fungal and exclude plant DNA sequences). Cloned products were digested with Hinf I and AluI and selected samples sequenced. Named sequences are from GenBank or from library cultures sequenced in our laboratory. Boot- strap values of /90% are shown at the nodes. RFLP types defined for analysis are shown on the right (Glo, Glomus; Acau, Acaulospora; Scut, Scutellospora), along with the number of clones of each type found in woodland (green numbers) and arable land (red numbers). Previously unpublished sequences have been deposited in GenBank under accession numbers AF074340–AF074373. Total Geosiphon S. pellucida 1000 0.01 A Gl. etunicatum 997 A Z G H A G Te Z 1000 R UYG108 (Strain from woodland) 990 Th P 999 Gl.mosseae Z P Gl.mosseae 993 1000 A H 1000 Gl.vesiculiferum Gl.intraradices G G 977 P Gl.versiforme 1000 S.dipapillosa Gi.gigantea Gi.margarita 936 S.dipurpur. H H 999 1000 G H 1000 H H 1000 Entrophospora sp. A.laevis A.spinosa A A.rugosa 992 H H R A.scrobiculata A 959 995 932 Acau1 Glo6 Glo4 Glo2 Glo7 Glo1 Glo8 Glo3 Glo9 Glo5 Acau2 Acau4 Acau3 Scut1 Glo10 Wood Arable 1 1 1 18 3 1 92 16 5 2 15 1 3 4 1 89 1 154 100

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Nature © Macmillan Publishers Ltd 1998

8Key species groups that affect major eco-

logical processes are vital componentsof community diversity. Many such keygroups are found in the soil, including themycorrhizal fungi that may connect plantsinto a functional “wood-wide web”1. Arbus-cular mycorrhizal associations are formedby fungi of the order Glomales with 90% ofland plant families, and many arbuscularmycorrhizal fungi are thought to have abroad host range2. Here we show that,despite this broad host range, the divers-ity of arbuscular mycorrhizal fungi is strik-ingly low in arable sites compared with awoodland.

The arbuscular mycorrhizal fungi thatcolonize roots cannot be reliably identifiedbelow the genus level except by molecularmethods. We examined roots from fiveabundant woodland plant species at foursites within a broadleaved wood dominatedby oak (Quercus petraea, colonized by ecto-

mycorrhizal fungi), and sycamore (Acerpseudoplatanus, colonized by arbuscularmycorrhizal fungi), at Castle Howard,North Yorkshire, UK. Partial fungal small-subunit ribosomal RNA sequences wereamplified, cloned and screened for differ-ences in restriction pattern by restriction-fragment length polymorphism (RFLP). Wesequenced selected clones to determinetheir phylogenetic position (Fig. 1). Forcomparison, we sampled pea, maize andwheat crops on three farms within a 55-kmradius of the woodland site.

There are three families in the Glomales,represented in our samples by the generaGlomus, Acaulospora and Scutellospora, andthese are readily distinguished as distinctsequence clusters (Fig. 1). Morphologicalstudies confirmed that these three generawere present in these roots3. In arable sites,92% of sequences represented Glomusmosseae or closely related taxa, whereas

those from woodland were much morediverse (Fig. 1). This was true even thoughthe arable sites were separated by up to66 km and three host species were sampled.The combined woodland samples had amuch higher diversity of RFLP types (Shan-non–Weiner H40.144) than the combinedarable samples (H40.398). In both woodand field, we often obtained identicalsequences from different plant species, sug-gesting that the broad host range exhibitedby many cultured arbuscular mycorrhizalfungi2 may also be realized in nature.

Given the broad host range of somearbuscular mycorrhizal fungal taxa, thechange in sequence composition and lowdiversity of the fungi in arable fields isprobably not a result of plant monocultureper se, but reflects other aspects of the agro-nomic regime such as ploughing, fertiliza-tion or fungicide application. In all thearable fields, regardless of host plant orlocation, the dominant arbuscular mycor-rhizal fungal type was a putative G. mosseaenot found in the woodland. This speciessporulates abundantly and colonizes readilyfrom spores, which may be more importantin a field that is ploughed annually than inwoodland4.

Arbuscular mycorrhizal fungi differwidely in their biological properties, andpresumably have several different roles inecosystems5. The low taxonomic diversity ofarbuscular mycorrhizal fungi in arablefields indicates that their functional contri-bution may be less there than in woodland.It has been suggested that low ecosystemdiversity may be associated with impairedfunction6,7 and reliability8,9. Our resultsshow that microbes need to be consideredin any assessment of the effects of agricul-ture on biological diversity and that inten-sive arable agriculture may be operating atminimum levels of diversity for at least onekey functional group.T. Helgason, T. J. Daniell, R. Husband,A. H. Fitter, J. P. W. YoungBiology Department, University of York,PO Box 373, York YO10 5YW, UKe-mail: [email protected]

1. Simard, S. W. et al. Nature 388, 579–582 (1997).

2. Smith, S. E. & Read, D. J. Mycorrhizal Symbiosis (Academic, San

Diego, 1996).

3. Merryweather, J. & Fitter, A. H. New Phytol. 138, 117–129

(1998).

4. Clapp, J. P., Young, J. P. W., Merryweather, J. W. & Fitter, A.H.

New Phytol. 130, 259–265 (1995).

5. Newsham, K. K., Fitter, A. H. & Watkinson, A. R. J. Ecol. 83,

991–1000 (1995).

6. Chapin, F. S. et al. Science 277, 500–504 (1997).

7. Tilman, D. et al. Science 277, 1300–1302 (1997).

8. McGrady-Steed, J., Harris, P. M. & Morin, P. J. Nature 390,

162–165 (1997).

9. Naeem, S. & Li, S. B. Nature 390, 507–509 (1997).

10.Simon, L., Lalonde, M. & Bruns, T. D. Appl. Environ. Biol. 58,

291–295 (1992).

NATURE | VOL 394 | 30 JULY 1998 431

Ploughing up the wood-wide web?scientific correspondence

FFiigguurree 11 Neighbour-joiningphylogeny of arbuscularmycorrhizal fungal DNAsequences amplified fromplant roots sampled atwoodland (green letters)and arable (red letters)sites. Fungal sequencesare identified by the hostplant from which theywere isolated. A, Ajuga; H,Hyacinthoides; E, Epilobi-um; G, Glechoma; R,Rubus (from the woodlandsite, sampled in July 1996).P, Pisum and Te, Triticumfrom Escrick; Th, Triticumfrom High Mowthorpe; Z,Zea from Bedale (arablesites, sampled at threetime points during 1997).Orange branches corre-spond to the arbuscularmycorrhizal fungus familyGlomaceae, purplebranches to Gigaspo-raceae, yellow branches toAcaulosporaceae, anddark blue branches to thetwo taxa that do not clus-ter with any of these fami-lies. Partial small-subunitribosomal DNA fragments of about 550 base pairs were amplified using Pfu DNA polymerase and primersNS31 (ref. 10) and AM1 (58-GTT TCC CGT AAG GCG CCG AA-38, designed to amplify fungal and excludeplant DNA sequences). Cloned products were digested with Hinf I and AluI and selected samplessequenced. Named sequences are from GenBank or from library cultures sequenced in our laboratory. Boot-strap values of ¤90% are shown at the nodes. RFLP types defined for analysis are shown on the right (Glo,Glomus; Acau, Acaulospora; Scut, Scutellospora), along with the number of clones of each type found inwoodland (green numbers) and arable land (red numbers). Previously unpublished sequences have beendeposited in GenBank under accession numbers AF074340–AF074373.

Total

Geosiphon

S. pellucida

1000

0.01

AGl. etunicatum

997

AZ

GH

AGTe

Z1000

RUYG108 (Strain

from woodland)

990

ThP

999

Gl.mosseaeZPGl.mosseae

993

1000

AH

1000

Gl.vesiculiferumGl.intraradices

GG

977

PGl.versiforme1000

S.dipapillosa

Gi.giganteaGi.margarita

936

S.dipurpur.H

H

999

1000

GH

1000

HH

1000

Entrophospora sp. A.laevis

A.spinosaA A.rugosa

992

HHRA.scrobiculata

A959

995

932

Acau1

Glo6

Glo4

Glo2

Glo7

Glo1

Glo8

Glo3

Glo9

Glo5

Acau2

Acau4

Acau3

Scut1

Glo10

Wo

od

A

rable

11

1

18

3

1

92

16

5

2

15 1

3

4

1

89 1

154 100