4 Ctkc Bp Vitekms Simplified User Guide en 2012mar08

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    S im p l i f i e d U s e r u i d e

    V I T EK MS Sim p l i f ie d U s e r G u id e V e rs i o n 4 p a g e 1

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 2

    Table of contentsVITEK MS instrument

    Configuration...

    Workflow

    Material and consumables ..

    Protocol ID&AST..

    Protocol ID

    Protocol AST. page 10

    page 4

    page 5

    page 6

    page 7

    page 8

    page 9

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 3

    VITEK MS Prep Station page 11

    MYLA Slides composition.... page 12

    VITEK MS Acquisition Station. pages 13-15

    MYLA : Results to be reviewed... pages 16-19

    MYLA : Results to be approved.. pages 20-21

    MYLA : Electronic Signature page 22

    MYLA : AST review..... page 23

    VITEK MS Users maintenance... page 24

    Table of contents

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 4

    VITEK MS Instrument

    Indicates an alarm

    Status OK

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 5

    MS-ID Database

    ( CE/IVD) embedded into MylaTM

    P ow er I on is in g V ac uu m N eg at iv eP ow er I on is in g V ac uu m N eg at iv eP ow er I on is in g V ac uu m N eg at iv e

    Po w e r Io n is in g V ac uu m N eg at iv ePo w e r Io n is in g V ac uu m N eg at iv ePo w e r Io n is in g V ac uu m N eg at iv e

    Prep Station

    Configuration

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 6

    Workflow

    Acquisition Station

    P ow er Io ni si ng V ac uu m Neg at iv eP ow er Io ni si ng V ac uu m Neg at iv eP ow er Io ni si ng V ac uu m Neg at iv e

    Prep Station

    Slidedescription

    Spectra

    Slidedescription

    Peak lists

    Slide

    description

    MS-ID Database

    ( CE/IVD) embedded into MylaTM

    Step 1Operator

    Information

    Step 3

    Step 2

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 7

    Material & consumables

    For Bacteria & Fungi

    Pipette ( 0.1-2.5l) + tips without filter

    Loops 1l

    VITEK MS-DS Target Slides 48 spots ref 410893

    Calibrant : LyfoCults Plus E.coli ATCC 8739 Ref. 301145

    Columbia agar + 5 % Sheep blood Ref. 43 041 / 43 049

    or Trypcase Soy agar + 5 % Sheep blood Ref. 43 001 / 43 009

    Matrix: VITEK MS-CHCA ref 411071

    For Molds & Mycoplasma

    Please refer to :

    For Yeast

    VITEK MS-FA ref 411072

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 8

    ProtocolIdentification VITEK MS

    & AST VITEK 2Prep Station

    Matrix deposit

    1L CHCA *

    Calibrant

    Deposit

    + Matrix

    Step 2

    Step 4

    A B

    Step3

    McF

    * Prior extraction for yeasts only: 0,5L Formic acid deposit

    Step 1

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 9

    ProtocolIdentification VITEK MS only

    Prep Station

    Matrix deposit

    1L CHCA *

    Calibrant

    Deposit

    + Matrix

    Step 2

    Step 3

    * Prior extraction for yeasts only: 0,5L Formic acid deposit

    O

    therisolates

    OtherAcquisitiongroups

    Step 1

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 0

    ProtocolAST VITEK 2 only

    Prep Station

    McF

    * Prior extraction for yeasts only: 0,5L Formic acid deposit

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 1

    6 .Scan the

    VITEK2 Card

    barcode andplace the card

    on the cassette

    1 . Scan the

    target slide

    2 . Scan the Lab

    ID on the plate

    3 . Choose

    between

    Bacteria or Fungi

    4 . Deposit the

    spots

    5 . Prepare thebacterial McF

    suspension

    7 . F4 Validate

    Prep Station

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 2

    Slides Composition

    Homepage

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 3

    Acquisition Station

    1. Open the door

    2. Scan the

    target slides

    barecodes

    3. VITEK MS

    retrieves target

    slides

    information

    4. Load the

    target slides into

    the VITEK MS

    5. Start the

    Acquisition

    6. Acquisition in

    progress

    7. End of

    acquisition

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 4

    Acquisition Station:Spots color code

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 5

    Acquisition Station:Spectra features

    Average of all the spectra

    collected for the sample

    Averaged data afterprocessing

    (smoothing, threshold

    substraction, peak

    detection)

    Peak list sent to the MS-ID

    server

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 6

    Results to be reviewed

    Detail of VITEK MS ID to be

    reviewed

    Homepage

    Technologist Dashboard

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 7

    Refresh the list of results

    Review selected identif ication results.

    The results are removed from this list

    and will be displayed in the Reviewed tab

    Review all identif ication results with

    a high confidence level.

    The results are removed from this list

    and will be displayed in the Reviewed tab

    Discard selected identification results.

    The results are removed from this list

    and will be displayed in the Reviewed tab

    Enter and assign a comment for theselected result (s) if applicable.

    Print a report file of the selected

    result(s) to be reviewed

    Results to be reviewed

    Indicates that an organism is a highly pathogenicorganism or a critical pathogen

    This result must be review using the following icon

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 8

    Results to be reviewed

    Rules for Consolidation :

    -The consolidated identification result can be sent as it is.

    - Consolidate the identification by selecting a result

    - Result cannot be consolidated, repeat the analysis

    (1) Select the

    organism name(2) Validate the selected

    organism name

    Optional: Display a pop-up

    window to enter comments

    for the selected result(s)

    Indicates that an organism has been selected

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 1 9

    Results to be reviewed

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 2 0

    Results to be approvedOnly if the 'Review and Approve for result

    Validation' setting is enabled in MYLA

    Detail of VITEK MS ID to be

    approved

    Homepage

    ManagerDashboard

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 2 1

    Refresh the list of results

    Approve the selected result (s)

    The results are removed from this list andwill be displayed in the Approved tab

    Approve all ident ification resul ts with

    a high confidence level

    The results are removed from this list

    and will be displayed in the Approved tab

    Reject the selected result(s)

    The rejected results are removed from this

    list and will be displayed in the To be

    reviewed tab with the status To rework

    Display a pop-up window to enter

    comments for the selected result(s)

    Print a report file of the selected

    result(s) to be approved

    Results to be approvedOnly if the 'Review and Approve for result

    Validation' setting is enabled in MYLA

    When a comment is entered, the button

    is displayed on the result line

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 2 2

    Electronic SignatureOnly if the Electronic Signature

    option setting is enabled in MYLA

    22

    When you review, discard, approve & reject result(s), an Electronic Signature

    has to be entered to confirm the sending of results.

    The 1st time, you have to enter the User name and Password, then only thePassword is required.

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 2 3

    AST Review

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    V I T EK MS Sim p l i f ie d U s e r G u id e V e r si o n 4 p a g e 2 4

    VITEKMS Users maintenance

    Maintenance Operation Frequency Refer to

    Cleaning the VITEK MS

    and the Acquisition Station

    + Acquisition Station monitor

    To be established according your

    internal procedure .

    To be written in your SOP

    Chapter 5 Maintenance

    Cleaning the Adapter To be established according yourinternal procedure .

    To be written in your SOP

    Changing the desiccant When the desiccant turns to pink

    Cleaning of the O-ring seal & thesealing face of the door To be established according your

    internal procedure .

    To be written in your SOP

    Chapter 12