29
2D NMR Course Final Problem 2013 NH H N O O O OH OH H H H H H H H Chemical Formula: C 29 H 38 N 2 O 5 Exact Mass: 494.2781 Butremycin Butremycin was isolated from a bacterium isolated from a Ghana mangrove. You have been provided with a processed MNova file as well as a pdf containing expansions of all the spectra. Using this data: 1.) Assign all the 1H NMR data and show this on the structure 2.) Assign all 13C NMR data and show this on a structure 3.) Indicate all the COSY data on a structure 4.) Indicate all the HMBC data on a structure 5.) Use the ROESY data to confirm that the stereochemistry is as shown. Your report should contain: 1.) Annotated spectra 2.) A data table showing your assignments 3.) 4 structures showing a. 1H assignments (letters on the table or shifts) b. 13C assignments (letters on the table or shifts) c. COSY correlations using arrows d. HMBC correlations using arrows 4.) Analysis of the ROESY data with conformational drawings of relevant sections of the molecule showing the through space correlations

2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

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Page 1: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

2D NMR Course Final Problem 2013

NH

HN

O

O

O

OHOH

HH

HH

H

H H

Chemical Formula: C29H38N2O5Exact Mass: 494.2781

Butremycin Butremycin was isolated from a bacterium isolated from a Ghana mangrove. You have been provided with a processed MNova file as well as a pdf containing expansions of all the spectra. Using this data:

1.) Assign all the 1H NMR data and show this on the structure 2.) Assign all 13C NMR data and show this on a structure 3.) Indicate all the COSY data on a structure 4.) Indicate all the HMBC data on a structure 5.) Use the ROESY data to confirm that the stereochemistry is as shown.

Your report should contain:

1.) Annotated spectra 2.) A data table showing your assignments 3.) 4 structures showing

a. 1H assignments (letters on the table or shifts) b. 13C assignments (letters on the table or shifts) c. COSY correlations using arrows d. HMBC correlations using arrows

4.) Analysis of the ROESY data with conformational drawings of relevant sections of the molecule showing the through space correlations

Page 2: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

Atom # δ 13C (ppm) 13C mult δ 1H (ppm) mult (Hz)

1H-1H COSY HMBC

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Page 3: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

Atom # δ 13C (ppm) 13C mult δ 1H (ppm) mult (Hz)

1H-1H COSY HMBC

Ao Bo Co Do Eo Fo Go Ho Io Jo Ko Lo Mo No Oo Po Qo Ro So To Uo Vo Wo Xo Yo Zo

Page 4: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.5f1 (ppm)

-40

-30

-20

-10

0

10

20

30

40

50

60

70

80

90

100

110

120

130

140

150

160

170

180

190

200

210

220KKMa3x100_SF3_WBH50Min_MDe_1H_for_2DKKMa3x100_SF3_WBH50Min_MDe

Page 5: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

5.65.75.85.96.06.16.26.36.46.56.66.76.86.97.07.17.27.37.47.57.67.77.87.98.08.18.28.38.48.5f1 (ppm)

-40

-30

-20

-10

0

10

20

30

40

50

60

70

80

90

100

110

120

130

140

150

160

170

180

190

200

210

220KKMa3x100_SF3_WBH50Min_MDe_1H_for_2DKKMa3x100_SF3_WBH50Min_MDe

1.06

1.02

1.02

1.06

1.00

0.89

1.77

5.62

5.63

5.64

5.75

5.75

5.77

5.77

5.82

5.84

6.00

6.01

6.02

6.03

6.04

6.04

6.45

6.47

6.48

6.49

7.29

7.32

8.43

Page 6: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.40.50.60.70.80.91.01.11.21.31.41.51.61.71.81.92.02.12.22.32.42.52.62.72.82.93.03.13.23.33.43.53.63.73.83.94.0f1 (ppm)

-40

-30

-20

-10

0

10

20

30

40

50

60

70

80

90

100

110

120

130

140

150

160

170

180

190

200

210

220KKMa3x100_SF3_WBH50Min_MDe_1H_for_2DKKMa3x100_SF3_WBH50Min_MDe

1.65

7.44

3.84

5.08

15.0

2

7.13

3.72

0.71

5.12

4.02

1.31

1.32

1.14

1.30

1.00

1.11

0.59

0.78

0.78

0.79

0.79

0.81

0.82

0.86

0.87

0.88

1.19

1.19

1.19

1.20

1.21

1.21

1.22

1.22

1.23

1.23

1.23

1.23

1.24

1.24

1.29

1.30

1.80

3.22

3.25

3.55

3.70

3.70

Page 7: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

-100102030405060708090100110120130140150160170180190200f1 (ppm)

-500

0

500

1000

1500

2000

2500

3000

3500

4000

4500

5000

5500

6000

6500

7000

7500KKMa3x100_SF3_WBH50Min_MDe_13CLMP01308_presat_DMSO_d6_11June13

13.6

718

.08

22.6

725

.94

30.7

832

.08

34.3

237

.91

38.1

239

.68

43.2

343

.44

48.5

148

.54

48.5

748

.57

48.5

848

.63

48.6

648

.66

48.6

748

.67

48.6

848

.69

48.6

948

.71

48.7

348

.75

48.8

048

.84

48.8

448

.86

48.8

848

.90

48.9

148

.93

48.9

348

.94

48.9

448

.95

48.9

648

.96

48.9

748

.97

48.9

849

.00

49.0

249

.04

49.0

549

.06

49.0

749

.08

49.0

849

.09

49.1

049

.10

49.1

149

.12

49.1

349

.14

49.2

449

.28

49.2

849

.40

49.4

249

.43

49.5

749

.62

50.2

950

.44

68.3

672

.50

124.

7712

9.58

130.

4013

1.96

141.

7614

7.78

168.

8817

0.42

195.

54

Page 8: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

100105110115120125130135140145150155160165170175180185190195f1 (ppm)

-500

0

500

1000

1500

2000

2500

3000

3500

4000

4500

5000

5500

6000

6500

7000

7500

102.

77

124.

77

129.

5813

0.40

131.

96

141.

76

147.

78

168.

8817

0.42

179.

97

184.

72

195.

54

Page 9: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

12141618202224262830323436384042444648505254565860626466687072f1 (ppm)

-500

0

500

1000

1500

2000

2500

3000

3500

4000

4500

5000

5500

6000

6500

7000

7500

13.6

7

18.0

8

22.6

7

23.7

3

25.9

4

30.1

830

.78

32.0

832

.25

33.0

734

.32

37.9

138

.12

39.6

8

43.2

343

.44

48.5

148

.57

48.5

748

.58

48.6

948

.69

48.7

148

.73

48.8

448

.84

48.8

648

.88

48.9

048

.94

48.9

448

.96

48.9

748

.97

48.9

849

.00

49.0

249

.05

49.1

049

.11

49.1

249

.13

49.1

449

.28

49.2

849

.42

49.4

3

68.3

6

72.5

0

Page 10: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

48.048.148.248.348.448.548.648.748.848.949.049.149.249.349.449.549.649.749.849.950.050.150.250.350.450.550.650.750.850.951.0f1 (ppm)

-500

0

500

1000

1500

2000

2500

3000

3500

4000

4500

5000

5500

6000

6500

7000

7500

48.5

148

.57

48.5

748

.58

48.6

948

.69

48.7

148

.73

48.7

548

.80

48.8

448

.84

48.8

648

.88

48.9

048

.94

48.9

448

.95

48.9

648

.97

48.9

748

.98

49.0

049

.02

49.0

449

.05

49.1

049

.10

49.1

149

.12

49.1

349

.14

49.2

449

.28

49.2

8

49.4

049

.42

49.4

3

49.5

7

49.6

2

50.2

9

50.4

4

Page 11: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.5f2 (ppm)

20

30

40

50

60

70

80

90

100

110

120

130

140

150

160

170

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HSQCKKMa3x100_SF3_WBH50Min_MDe

Page 12: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

5.65.75.85.96.06.16.26.36.46.56.66.76.86.97.07.17.27.37.47.57.67.77.87.98.08.18.28.38.48.5f2 (ppm)

125

130

135

140

145

150

155

160

165

170

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HSQCKKMa3x100_SF3_WBH50Min_MDe

Page 13: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.60.70.80.91.01.11.21.31.41.51.61.71.81.92.02.12.22.32.42.52.62.72.82.93.03.13.23.33.43.53.63.73.83.9f2 (ppm)

10

15

20

25

30

35

40

45

50

55

60

65

70

75

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HSQCKKMa3x100_SF3_WBH50Min_MDe

Page 14: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.51.01.52.02.53.03.54.04.55.05.56.06.57.07.5f2 (ppm)

0.5

1.0

1.5

2.0

2.5

3.0

3.5

4.0

4.5

5.0

5.5

6.0

6.5

7.0

7.5

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_COSYKKMa3x100_SF3_WBH50Min_MDe

Page 15: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

5.55.65.75.85.96.06.16.26.36.46.56.66.76.86.97.07.17.27.37.4f2 (ppm)

5.4

5.5

5.6

5.7

5.8

5.9

6.0

6.1

6.2

6.3

6.4

6.5

6.6

6.7

6.8

6.9

7.0

7.1

7.2

7.3

7.4

7.5

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_COSYKKMa3x100_SF3_WBH50Min_MDe

Page 16: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

5.405.455.505.555.605.655.705.755.805.855.905.956.006.056.106.156.206.256.306.356.406.456.506.556.60f2 (ppm)

1.4

1.6

1.8

2.0

2.2

2.4

2.6

2.8

3.0

3.2

3.4

3.6

3.8

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_COSYKKMa3x100_SF3_WBH50Min_MDe

Page 17: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.40.60.81.01.21.41.61.82.02.22.42.62.83.03.23.43.63.84.04.24.4f2 (ppm)

0.5

1.0

1.5

2.0

2.5

3.0

3.5

4.0

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_COSYKKMa3x100_SF3_WBH50Min_MDe

Page 18: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.40.50.60.70.80.91.01.11.21.31.41.51.61.71.81.92.02.12.22.32.42.52.62.72.8f2 (ppm)

0.6

0.8

1.0

1.2

1.4

1.6

1.8

2.0

2.2

2.4

2.6

2.8

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_COSYKKMa3x100_SF3_WBH50Min_MDe

Page 19: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.51.01.52.02.53.03.54.04.55.05.56.06.57.0f2 (ppm)

10

20

30

40

50

60

70

80

90

100

110

120

130

140

150

160

170

180

190

200

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HMBCKKMa3x100_SF3_WBH50Min_MDe

Page 20: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

3.43.63.84.04.24.44.64.85.05.25.45.65.86.06.26.46.66.87.07.27.4f2 (ppm)

120

130

140

150

160

170

180

190

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HMBCKKMa3x100_SF3_WBH50Min_MDe

Page 21: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.91.01.11.21.31.41.51.61.71.81.92.02.12.22.32.42.52.62.72.82.9f2 (ppm)

125

130

135

140

145

150

155

160

165

170

175

180

185

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HMBCKKMa3x100_SF3_WBH50Min_MDe

Page 22: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.51.01.52.02.53.03.54.04.55.05.56.06.57.07.5f2 (ppm)

10

15

20

25

30

35

40

45

50

55

60

65

70

75

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HMBCKKMa3x100_SF3_WBH50Min_MDe

Page 23: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

2.83.03.23.43.63.84.04.24.44.64.85.05.25.45.65.86.06.26.46.66.87.07.27.4f2 (ppm)

30

35

40

45

50

55

60

65

70

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HMBCKKMa3x100_SF3_WBH50Min_MDe

Page 24: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.50.60.70.80.91.01.11.21.31.41.51.61.71.81.92.02.12.22.32.42.52.62.72.82.93.03.13.23.33.43.53.63.73.8f2 (ppm)

48

50

52

54

56

58

60

62

64

66

68

70

72

74

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HMBCKKMa3x100_SF3_WBH50Min_MDe

Page 25: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.40.50.60.70.80.91.01.11.21.31.41.51.61.71.81.92.02.12.22.32.42.52.62.72.8f2 (ppm)

14

16

18

20

22

24

26

28

30

32

34

36

38

40

42

44

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_HMBCKKMa3x100_SF3_WBH50Min_MDe

Page 26: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.5f2 (ppm)

1

2

3

4

5

6

7

8

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_ROESY_300msKKMa3x100_SF3_WBH50Min_MDe

Page 27: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

5.55.65.75.85.96.06.16.26.36.46.56.66.76.86.97.07.17.27.37.47.57.67.7f2 (ppm)

5.6

5.8

6.0

6.2

6.4

6.6

6.8

7.0

7.2

7.4

7.6

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_ROESY_300msKKMa3x100_SF3_WBH50Min_MDe

Page 28: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

5.45.55.65.75.85.96.06.16.26.36.46.56.66.76.86.97.07.17.27.37.4f2 (ppm)

0.9

1.0

1.1

1.2

1.3

1.4

1.5

1.6

1.7

1.8

1.9

2.0

2.1

2.2

2.3

2.4

2.5

2.6

2.7

2.8

2.9

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_ROESY_300msKKMa3x100_SF3_WBH50Min_MDe

Page 29: 2D NMR Course Final Problem 2013 - Homepageshomepages.abdn.ac.uk/m.jaspars/pages/OSA/2D NMR... · 2D NMR Course Final Problem 2013 . NH H N O O O OH OH H H H H H H Chemical Formula:

0.40.60.81.01.21.41.61.82.02.22.42.62.83.03.23.43.63.8f2 (ppm)

0.5

1.0

1.5

2.0

2.5

3.0

3.5

4.0

f1 (

ppm

)

KKMa3x100_SF3_WBH50Min_MDe_ROESY_300msKKMa3x100_SF3_WBH50Min_MDe