ABIN Overview

Australian Biosecurity Online

Kymme HoadleyClient Support Coordinator

Email: kymme.hoadley@csiro.auPhone: (02) 6214 2967

Biosecurity Challenge

ResearchResearch

Primary Primary

GovernmentGovernment

SurveillanceSurveillance

ResearchResearch

Emergency

Response

Emergency

ResponseDiagnosticsDiagnostics

EnvironmentEnvironment Human HealthHuman Health

Not for

Profits

Not for

Profits

National National

Act

ivit

ies

Org

an

isa

tio

ns

Se

cto

rs

IndustriesIndustries

ConnectivityConnectivity

Primary

Industries

Primary

Industries

SilosSilos

EnvironmentEnvironment Human HealthHuman HealthNational

Security

National

Security

Data sharingData sharingFavorite IT

systems

Favorite IT

systems

Adopting new

technology

Adopting new

technology

CollaborationCollaboration SecuritySecurity InteroperabilityInteroperability

Se

cto

rsC

ult

ure

Str

ate

gic

Init

iati

ves

Introduction to ABIN Video

http://vimeo.com/channels/abinhttp://vimeo.com/channels/abin

Cross agency meetings - up to 35 simultaneous participants Real time cross-agency/field collaborative research & operations

Broadcast presentations to a total of 200 people, record

and replay. Enables cross agency training and exercises

National network, distributed organisation, working group,

committees

ABIN Service Delivery + Relationship with Third Parties

Knowledge Collaboration

e.g. Neptune, VetPath, WildHealth, FFBok, STARS (LIMS interface), PaDIL, ALAPurpose-specific

Infrastructure capability

Provided by third party

Biosecurity stakeholders

Data analysis tools (e.g.

mapping, modelling

Virtual collaboration

specific + common tools

Virtual collaboration

environments

Single interface to sector

specific + common tools

Managed by individual

biosecurity communities

Data Storage Applications Hosting

ABIN Server infrastructure and operations

Data analysis tools

(e.g. mapping,

modelling

Knowledge

repository and

Shared data sets (e.g.

reference info)

Other tools

(e.g. virtual

diagnostics)

Collaboration

Tools

(e.g. web conference

and white boarding)

Search and

DeliveryOnline Training

ABIN infrastructure

platform supporting

common tools required

across biosecurity sectors

Provided by ABIN

Specialised generic infrastructureProvided by third party infrastructure

providers

ABIN’s web portal to biosecurity online

Online Biosecurity

Communities

Since January 2011 there are 750 registered members, an additional 100 guest users, and 55

Community Spaces being used to meet needs across the biosecurity continuum

Registration and tutorials

• Watch the registration video:

http://www.abin.org.au/web/trainingvideos/simulation/regist

er.htm

• Go to the http://www.abin.org.au homepage to register

• More training and tutorial videos are available on the • More training and tutorial videos are available on the

http://www.abin.org.au/web/trainingvideos/ page

Spatially Enabling Datasets

Australian Biosecurity Online

Karin StronkhorstSpatial Data Facilitator

Email: Karin.Stronkhorst@csiro.auPhone: (08) 8999 2175

• GAP Analysis were conducted last year to determine the mapping needs of the stakeholders in the Top End to spatially enable their data and improve their GIS skills.

GAP Analysis for Darwin and Cairns

• A number of project proposals were identified in this analysis for different stakeholders.

After prioritisation the following projects were

selected where we assist in improving stakeholder

staff’s GIS skills in the process:

� CRC National Plant Biosecurity – Visualising rate and

shape of Panama Disease

� NT DoR – Spatially Enabled Animal Health Property

GAP Analysis for NT

� NT DoR – Spatially Enabled Animal Health Property

Identification Code (PIC)

� NT DoR – Spatially Enabled Plant Health Property

Identification Code (PIC)

� NT DoR – Spatially Enabled Interstate Certification

Assurance System (ICAS) for Plant Health

Objectives:

a) Produce time series maps/model displaying rate and

shape of infection spread in Banana trees over 4

paddocks of one property using weekly field surveys

showing banana plants infected with tropical race 4

‘panama disease’

1. GAP Analysis for NT – Panama Disease

‘panama disease’

b) Produce geoprocessing model for future application.

c) Develop a standard field collection

template/schema for future survey’s using PDA

devices or hardcopy methods.

Process Steps:

• Create a fishnet point grid

• Calculate fields: unique ‘row id’, ‘column id’ and

concatenate these into ‘plant id’

• Format data-collection spreadsheet to end up

with ‘plant id’, ‘infected’ and ‘beginDate’ and

1. GAP Analysis for NT – Panama Disease

with ‘plant id’, ‘infected’ and ‘beginDate’ and

‘endDate’ fields.

• Join the spreadsheet to the fishnet point grid &

export to feature class

• Create the time series visualisation in ArcGIS

ArcGIS Time Slider snapshot exhibiting unpredictable spread:

1. GAP Analysis for NT – Panama Disease

Or when exported to an .avi movie something like this:

1. GAP Analysis for NT – Panama Disease

Objectives:

a) Migrate Access Database to Oracle Spatial in NTLIS

infrastructure

b) Automate PIC numbering

c) Create a spatial PIC layer via one-to-many join with

DCDB

d) Enable editing of polygons & attributes via browser

2. GAP Analysis for NT – Animal Health PIC

d) Enable editing of polygons & attributes via browser

e) Enable reporting on attributes via browser

f) Develop updating process, tools and administrator

training for maintenance of PIC layer.

Objectives:

a) Same process as the Animal Health PIC

b) AH PIC spatial dataset framework can be cloned

3. GAP Analysis for NT – Plant Health PIC

Objectives:

a) Create a spatial layer of business address points with each

point linked to the ICA records of an individual business in

an MS Access database.

b) Develop updating process, tools and administrator

training for maintenance of ICA map layer.

4. GAP Analysis for NT – ICAS

training for maintenance of ICA map layer.

c) Make the points visible in a GIS client such as the ABIN

Mapping Tool (AMT).

Process Steps:

Create points for existing businesses in database:

• Extract Business addresses and concatenate a

unique id from the business + facility identifiers

• Geocode in GPS Visualizer

• Add the coordinates to the facility table

4. GAP Analysis for NT – ICAS

• Add the coordinates to the facility table

• Add X and Y fields to the entry form

• Create GIS query in MS Access

• Export GIS query to text or csv

• XY Event layer in ArcGIS, QGIS or the ABIN

Mapping tool

4. GAP Analysis for NT – ICAS in ABIN Mapping Tool

ABIN Spatial Software

Australian Biosecurity Online

Umair CheemaSpatial Software DeveloperEmail: umair.cheema@csiro.au

Phone: (03) 96627325

• All major ABIN software centric projects have Mapping components

• Using commercial as well as Open source GIS software

• ESRI ArcGIS

• Oracle Spatial

• Geoserver

• Open Layers

• GeoExt

• QGIS

Spatial Software in ABIN

• QGIS

• GRASS

• Development of ABIN Mapping Tool (AMT)

• ABIN Mapping Tool is a secure online web mapping visualization and analysis software for Biosecurity community

• Currently under development

• Expected release to Biosecurity and Mapping Community Spaces in ABIN by April 20,2012

ABIN Mapping Tool (AMT)

• Upload and visualize spatial data in Comma Separated Values (CSV), Tab Separated Values (TSV), Google KML and GPX format.

• Overlay different layers over a basemap

• Find all the available layers in the ABIN Geoserver

• Add a layer available in the ABIN Geoserver on the map

• Query Remote Spatial Database Server using Web Mapping Service (WMS)

• Pan, Zoom In and Zoom out of the map

• Zoom to the full extent of the map

AMT Features

• Zoom to the full extent of the map

• Display/Hide Map Scale

• Display/Hide Map Legend

• Display/Hide Individual Layers

• Find distances and Areas

• Change the opacity of a layer displayed on the map (Useful in Overlaying)

• Display attributes of a vector dataset

• Display Latitude and Longitude of the location under the mouse cursor

• Select individual features of the layer

• Select a group of features within a bounding box

• Save the selected features as a separate layer

• Query vector data based on its attributes

• Save the result of the Attribute query as a separate layer

• Basis Statistical Analysis

AMT Features (Contd...)

• Basis Statistical Analysis

• Export any layer as a downloadable KML dataset

• Add text annotation on the map

• Add markers (default as well as customized) anywhere on the map

• Save the map as an image

• Print the map

Screenshots

Screenshots

Screenshots

Questions

Visit us at

What can we do for you?

Visit us at

www.abin.org.au