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2008 Computing in Science and Engineering Vol. 10
AUTHOR INDEX
A
Adams, III, George B., see Klimeck, Gerhard.
Ahrens, James P., see Anderson, Erik W.
Alfradique, Marcelo F., see Macedo, Raquel S.
Allaei, S. Mehdi Vaez, see Sahimi, Muhammad.
Allaei, S. Mehdi Vaez, see Sahimi, Muhammad.
Anderson, Erik W., James P. Ahrens, Katrin Heitmann, Salman Habib, and Claudio T. Silva, "Provenance in Comparative Analysis: A Study in Cosmology," May/June, pp. 30–37.
Anderson, Kelly L., see Pandey, Ras B.
Armstrong, Brian, see Sayeed, Mohamed.
B
Babak, Stanislav, see Vallisneri, Michele.
Bae, Hansang, see Sayeed, Mohamed.
Baptista, Antsnio, Bill Howe, Juliana Freire, David Maier, and Claudio T. Silva, "Scientific Exploration in the Era of Ocean Observatories," May/June, pp. 53–58.
Barnett, Heath A., see Ham, Kyungmin.
Bauke, Heiko, "Passing Messages to Lonely Numbers," Mar./Apr., pp. 32–40.
Beichl, Isabel, and Francis Sullivan, "Combinatorics in Computing," Mar./Apr., pp. 12–13.
Bernardon, Fabio F., Linh K. Ha, Steven P. Callahan, Joco L.D. Comba, and Claudio T. Silva, "Transfer-Function Specification for Rendering Disparate Volumes," Nov./Dec., pp. 82–89.
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Berry, Jonathan W., see Hendrickson, Bruce.
Bezakova, Ivona, "Sampling Binary Contingency Tables," Mar./Apr., pp. 26–31.
Brophy, Sean P., see Klimeck, Gerhard.
Butler, Leslie G., see Ham, Kyungmin.
Buttari, Alfredo, see Kurzak, Jakub.
C
Callahan, Jason H., see Callahan, Steven P.
Callahan, Steven P., Jason H. Callahan, Carlos E. Scheidegger, and Claudio T. Silva, "Direct Volume Rendering: A 3D Plotting Technique for Scientific Data," Jan./Feb., pp. 88–92.
Callahan, Steven P., see Bernardon, Fabio F.
Carey, Kate, see Gordon, Steven I.
Castier, Marcelo, see Macedo, Raquel S.
Chartier, Timothy P., "A Googol of Information about Google," Nov./Dec., pp. 11–12.
Chen, Jim X., see Liu, Yanling.
Chiu, Matt, see Herbordt, Martin C.
Chonacky, Norman, "Ave Atque Vale," Nov./Dec., pp. 3–5.
Chonacky, Norman, "Back to the Future?," May/June, pp. 3–4.
Chonacky, Norman, "Coming to a Digital Library Near You," Sep./Oct., pp. 3–4.
Chonacky, Norman, "Ten Years and Counting," July/Aug., pp. 3.
Chonacky, Norman, "Turning a Page and Learning Something Useful," Mar./Apr., pp. 4–5.
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Chonacky, Norman, "Where in this World Are You?," Jan./Feb., pp. 3–6.
Chowdhury, Debashish, "Molecular Motors: Design, Mechanism, and Control," Mar./Apr., pp. 70–77.
Clay, R. Torsten, and Richard Gass, "Books," Mar./Apr., pp. 85–87.
Comba, Joco L.D., see Bernardon, Fabio F.
Corcho, Oscar, see Gsmez-Pirez, Jose Manuel.
D
Day, Charles, "From First Principles--Gauging the Web's Impact on Scientific Journals," July/Aug., pp. 96.
Day, Charles, "The Irony of Craigslist," Mar./Apr., pp. 88.
Day, Charles, "Software Makes Hardware," Nov./Dec., pp. 104.
DeCoste, Don J., see Sendlinger, Shawn C.
Deelman, Ewa, see Miles, Simon.
Dolgert, Andrew, Lawrence Gibbons, Christopher D. Jones, Valentin Kuznetsov, Mirek Riedewald, Daniel Riley, Gregory J. Sharp, and Peter Wittich, "Provenance in High-Energy Physics Workflows," May/June, pp. 22–29.
Dongarra, Jack, see Kurzak, Jakub.
Dormido, Raquel, see Duro, Natividad.
Dormido, Sebastian, see Duro, Natividad.
Dormido-Canto, Sebastian, see Duro, Natividad.
Downey, Laura L., see Pennington, Deana D.
Dubois, Paul F., "Brain Cancer May Be the Least of Our Worries," May/June, pp. 7–8.
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Dubois, Paul F., "Goodbye to All That," July/Aug., pp. 93–95.
Dubois, Paul F., "Sprinting Ain't Easy," Jan./Feb., pp. 70–71.
Dummitt, Diana Avalos, see Sendlinger, Shawn C.
Dunning, Thom H., see Sendlinger, Shawn C.
Duro, Natividad, Raquel Dormido, Hictor Vargas, Sebastian Dormido-Canto, Josi Sanchez, Gonzalo Farias, Francisco Esquembre, and Sebastian Dormido, "An Integrated Virtual and Remote Control Lab: The Three-Tank System as a Case Study," July/Aug., pp. 50–59.
E
Easterbrook, Steve, see Matthews, David.
Eigenmann, Rudolf, see Sayeed, Mohamed.
Elmagarmid, Ahmed K., Arjmand Samuel, and Mourad Ouzzani, "Community-Cyberinfrastructure-Enabled Discovery in Science and Engineering," Sep./Oct., pp. 46–53.
Esquembre, Francisco, see Duro, Natividad.
Ethier, Stiphane, see Jones, Chad.
F
Farias, Gonzalo, see Duro, Natividad.
Farmer, Barry L., see Pandey, Ras B.
Feiereisen, Bill, and George K. Thiruvathukal, "At Issue," Mar./Apr., pp. 60–64.
Fekete, George, see Thakar, Ani R.
Freire, Juliana, David Koop, Emanuele Santos, and Claudio T. Silva, "Provenance for Computational Tasks: A Survey," May/June, pp. 11–21.
Freire, Juliana, see Baptista, Antsnio.
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Fyta, Maria, Simone Melchionna, Efthimios Kaxiras, and Sauro Succi, "Multiscale Simulation of Nanobiological Flows," July/Aug., pp. 10–19.
G
Gass, Richard, see Clay, R. Torsten.
Gibbons, Lawrence, see Dolgert, Andrew.
Gilbert, John R., Steve Reinhardt, and Viral B. Shah, "A Unified Framework for Numerical and Combinatorial Computing," Mar./Apr., pp. 20–25.
Gobbert, Matthias K., and Nagaraj K. Neerchal, "Preparing Graduate Students for Interdisciplinary Careers," Jan./Feb., pp. 93–95.
Goldrian, Gottfried, Thomas Huth, Benjamin Krill, Jack Lauritsen, Heiko Schick, Ibrahim Ouda, Simon Heybrock, Dieter Hierl, Thilo Maurer, Nils Meyer, Andreas Schdfer, Stefan Solbrig, Thomas Streuer, Tilo Wettig, Dirk Pleiter, Karl-Heinz Sulanke, Frank Winter, Hubert Simma, Sebastiano Fabio Schifano, and Raffaele Tripiccione, "QPACE: Quantum Chromodynamics Parallel Computing on the Cell Broadband Engine," Nov./Dec., pp. 46–54.
Gorder, Pam Frost, "Coming Soon: Research in a Cloud," Nov./Dec., pp. 6–10.
Gorder, Pam Frost, "Computer Vision, Inspired by the Human Brain," Mar./Apr., pp. 6–11.
Gorder, Pam Frost, "Medical Software has Astronomers Seeing Stars," July/Aug., pp. 4–9.
Gordon, Steven I., Kate Carey, and Ignatios Vakalis, "A Shared, Interinstitutional Undergraduate Minor Program in Computational Science," Sep./Oct., pp. 12–16.
Gottlieb, Steven, see Kindratenko, Volodymyr.
Granger, Brian E., see Messmer, Peter.
Gray, Jim, see Thakar, Ani R.
Gray, Jim, see Szalay, Alex.
Gray, Michael A., "Multiphysics Technologies," Mar./Apr., pp. 82–84.
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Gray, Michael A., "Sage: A New Mathematics Software System," Nov./Dec., pp. 72–75.
Gray, Paul, see Joiner, David.
Gregerson, Robert G., and Tim H. Lindblom, "A Unique Textbook for Teaching Courses in Bioinformatics," Jan./Feb., pp. 7–8.
Groth, Paul, see Miles, Simon.
Gu, Yongfeng, see Herbordt, Martin C.
Gsmez-Pirez, Jose Manuel, and Oscar Corcho, "Problem-Solving Methods for Understanding Process Executions," May/June, pp. 47–52.
H
Ha, Linh K., see Bernardon, Fabio F.
Habib, Salman, see Anderson, Erik W.
Ham, Kyungmin, Heath A. Barnett, and Leslie G. Butler, "Burning Issues in Tomography Analysis," Mar./Apr., pp. 78–81.
Hasbun, Javier E., "How Do Nerve Cells Compute?," May/June, pp. 64–65.
Heitmann, Katrin, see Anderson, Erik W.
Hendrickson, Bruce, and Jonathan W. Berry, "Graph Analysis with High-Performance Computing," Mar./Apr., pp. 14–19.
Herbordt, Martin C., Yongfeng Gu, Tom VanCourt, Josh Model, Bharat Sukhwani, and Matt Chiu, "Computing Models for FPGA-Based Accelerators," Nov./Dec., pp. 35–45.
Heybrock, Simon, see Goldrian, Gottfried.
Hierl, Dieter, see Goldrian, Gottfried.
Howe, Bill, see Baptista, Antsnio.
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Huth, Thomas, see Goldrian, Gottfried.
J
Jakobsson, Eric, see Sendlinger, Shawn C.
Jayaraj, Jagan, see Woodward, Paul R.
Jin, Xiaogang, see Zhou, Chuan.
Joiner, David, Charles Peck, Thomas Murphy, and Paul Gray, "Education, Outreach, and Training for High-Performance Computing," Sep./Oct., pp. 40–45.
Jones, Chad, Kwan-Liu Ma, Stiphane Ethier, and Wei-Li Lee, "An Integrated Exploration Approach to Visualizing Multivariate Particle Data," July/Aug., pp. 20–29.
Jones, Christopher D., see Dolgert, Andrew.
K
Katz, Samantha, see Pennington, Deana D.
Kaxiras, Efthimios, see Fyta, Maria.
Kaylor, Joe, and George K. Thiruvathukal, "A Virtual Computing Laboratory," Mar./Apr., pp. 65–69.
Kindratenko, Volodymyr, George K. Thiruvathukal, and Steven Gottlieb, "High-Performance Computing Applications on Novel Architectures," Nov./Dec., pp. 13–15.
Klimeck, Gerhard, Michael McLennan, Sean P. Brophy, George B. Adams III, and Mark S. Lundstrom, "nanoHUB.org: Advancing Education and Research in Nanotechnology," Sep./Oct., pp. 17–23.
Koop, David, see Freire, Juliana.
Krill, Benjamin, see Goldrian, Gottfried.
Kruger, Scott, see Pletzer, Alexander.
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Kurzak, Jakub, Alfredo Buttari, Piotr Luszczek, and Jack Dongarra, "The PlayStation 3 for High-Performance Scientific Computing," May/June, pp. 84–87.
Kurzer, Jacob M., see Pancratov, Cosmin.
Kurzer, Jacob M., see Pancratov, Cosmin.
Kurzer, Jacob M., see Pancratov, Cosmin.
Kuznetsov, Valentin, see Dolgert, Andrew.
Kyriakidis, Jordan, "A Generic Approach to Electronic Structure Calculations in Nanoscopic Systems," Jan./Feb., pp. 60–69.
L
Läufer, Konstantin, "A Stroll through Domain-Driven Development with Naked Objects," May/June, pp. 76–83.
Landau, David P., see Tsai, Shan-Ho.
Lathrop, Scott, and Thomas Murphy, "High-Performance Computing Education," Sep./Oct., pp. 9–11.
Lauritsen, Jack, see Goldrian, Gottfried.
Lee, Wei-Li, see Jones, Chad.
Li, Nolan, and Ani R. Thakar, "CasJobs and MyDB: A Batch Query Workbench," Jan./Feb., pp. 18–29.
Lin, Pei-Hung, see Woodward, Paul R.
Lindblom, Tim H., see Gregerson, Robert G.
Liu, Yanling, Jim X. Chen, and Lin Yang, "Real-Time Photorealistic Virtual Human Anatomy," Mar./Apr., pp. 41–47.
Lundstrom, Mark S., see Klimeck, Gerhard.
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Luszczek, Piotr, see Kurzak, Jakub.
Ldufer, Konstantin, see Thiruvathukal, George K.
M
Ma, Kwan-Liu, see Jones, Chad.
Macedo, Raquel S., Marcelo F. Alfradique, and Marcelo Castier, "Automatic Generation of Matlab Functions Using Mathematica and Thermath," July/Aug., pp. 41–49.
Maier, David, see Baptista, Antsnio.
Martmnez, Todd J., see Ufimtsev, Ivan S.
Matthews, David, Greg Wilson, and Steve Easterbrook, "Configuration Management for Large-Scale Scientific Computing at the UK Met Office," Nov./Dec., pp. 56–64.
Mattson, Dave R., see Sendlinger, Shawn C.
Maurer, Thilo, see Goldrian, Gottfried.
McCune, Douglas, see Pletzer, Alexander.
McLennan, Michael, see Klimeck, Gerhard.
Mehta, Gaurang, see Miles, Simon.
Melchionna, Simone, see Fyta, Maria.
Messmer, Peter, Paul J. Mullowney, and Brian E. Granger, "GPULib: GPU Computing in High-Level Languages," Sep./Oct., pp. 70–73.
Meyer, Nils, see Goldrian, Gottfried.
Michener, William K., see Pennington, Deana D.
Miles, Simon, Paul Groth, Ewa Deelman, Karan Vahi, Gaurang Mehta, and Luc Moreau, "Provenance: The Bridge Between Experiments and Data," May/June, pp. 38–46.
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Model, Josh, see Herbordt, Martin C.
Moreau, Luc, see Miles, Simon.
Mullowney, Paul J., see Messmer, Peter.
Murphy, Thomas, see Joiner, David.
Murphy, Thomas, see Lathrop, Scott.
Muszala, Stefan, see Pletzer, Alexander.
N
Naji, Hamid Reza, "Solving Complex Computational Problems Using Multiagents Implemented in Hardware," Sep./Oct., pp. 54–63.
Neerchal, Nagaraj K., see Gobbert, Matthias K.
Neilsen, Jr., Eric H., "The Sloan Digital Sky Survey Data Archive Server," Jan./Feb., pp. 13–17.
O
Ouda, Ibrahim, see Goldrian, Gottfried.
Ouzzani, Mourad, see Elmagarmid, Ahmed K.
P
Pan, Hailang, see Shi, Lei.
Pancratov, Cosmin, Jacob M. Kurzer, Kelly A. Shaw, and Matthew L. Trawick, "Why Computer Architecture Matters," May/June, pp. 59–63.
Pancratov, Cosmin, Jacob M. Kurzer, Kelly A. Shaw, and Matthew L. Trawick, "Why Computer Architecture Matters: Memory Access," July/Aug., pp. 71–75.
Pancratov, Cosmin, Jacob M. Kurzer, Kelly A. Shaw, and Matthew L. Trawick, "Why Computer Architecture Matters: Thinking through Trade-offs in Your Code," Sep./Oct., pp. 74–79.
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Pandey, Ras B., Kelly L. Anderson, and Barry L. Farmer, "Sheets: Entropy Dissipation, Multiscale Dynamics, Dispersion, and Intercalation," Nov./Dec., pp. 90–98.
Peck, Charles, see Joiner, David.
Pennington, Deana D., William K. Michener, Samantha Katz, Laura L. Downey, and Mark Schildhauer, "Transforming Scientists through Technical Education: A View from the Trenches," Sep./Oct., pp. 28–33.
Pleiter, Dirk, see Goldrian, Gottfried.
Pletzer, Alexander, Douglas McCune, Stefan Muszala, Srinath Vadlamani, and Scott Kruger, "Exposing Fortran Derived Types to C and Other Languages," July/Aug., pp. 86–92.
R
Reinhardt, Steve, see Gilbert, John R.
Riedewald, Mirek, see Dolgert, Andrew.
Riley, Daniel, see Dolgert, Andrew.
Rust, Bert W., see Thijsse, Barend J.
S
Sahimi, Muhammad, and S. Mehdi Vaez Allaei, "Numerical Simulation of Wave Propagation, Part I: Sequential Computing," May/June, pp. 66–75.
Sahimi, Muhammad, and S. Mehdi Vaez Allaei, "Numerical Simulation of Wave Propagation, Part II: Parallel Computing," July/Aug., pp. 76–83.
Saied, Faisal, see Sayeed, Mohamed.
Samuel, Arjmand, see Elmagarmid, Ahmed K.
Santos, Emanuele, see Freire, Juliana.
Sayeed, Mohamed, Hansang Bae, Yili Zheng, Brian Armstrong, Rudolf Eigenmann, and Faisal
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Saied, "Measuring High-Performance Computing with Real Applications," July/Aug., pp. 60–70.
Scheidegger, Carlos E., see Callahan, Steven P.
Schick, Heiko, see Goldrian, Gottfried.
Schifano, Sebastiano Fabio, see Goldrian, Gottfried.
Schildhauer, Mark, see Pennington, Deana D.
Schdfer, Andreas, see Goldrian, Gottfried.
Sendlinger, Shawn C., Don J. DeCoste, Thom H. Dunning, Diana Avalos Dummitt, Eric Jakobsson, Dave R. Mattson, and Edee Norman Wiziecki, "Transforming Chemistry Education through Computational Science," Sep./Oct., pp. 34–39.
Shah, Viral B., see Gilbert, John R.
Sharp, Gregory J., see Dolgert, Andrew.
Shaw, Kelly A., see Pancratov, Cosmin.
Shaw, Kelly A., see Pancratov, Cosmin.
Shaw, Kelly A., see Pancratov, Cosmin.
Shi, Lei, Xin Yang, and Hailang Pan, "3D Face Visualization Using Grid Light," Mar./Apr., pp. 48–54.
Silva, Claudio T., see Callahan, Steven P.
Silva, Claudio T., and Joel E. Tohline, "Computational Provenance," May/June, pp. 9–10.
Silva, Claudio T., see Freire, Juliana.
Silva, Claudio T., see Anderson, Erik W.
Silva, Claudio T., see Baptista, Antsnio.
Silva, Claudio T., see Bernardon, Fabio F.
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Simma, Hubert, see Goldrian, Gottfried.
Solbrig, Stefan, see Goldrian, Gottfried.
Streuer, Thomas, see Goldrian, Gottfried.
Succi, Sauro, see Fyta, Maria.
Sukhwani, Bharat, see Herbordt, Martin C.
Sulanke, Karl-Heinz, see Goldrian, Gottfried.
Sullivan, Francis, see Beichl, Isabel.
Sullivan, Francis, "Curb Your Enthusiasm," Jan./Feb., pp. 96.
Sullivan, Francis, "I Wandered Lonely as a Cloud," May/June, pp. 88.
Sullivan, Francis, "This Time for Sure," Sep./Oct., pp. 80.
Szalay, Alex, see Thakar, Ani R.
Szalay, Alex, Ani R. Thakar, and Jim Gray, "The sqlLoader Data-Loading Pipeline," Jan./Feb., pp. 38–48.
Sanchez, Josi, see Duro, Natividad.
T
Thakar, Ani R., see Li, Nolan.
Thakar, Ani R., Alex Szalay, George Fekete, and Jim Gray, "The Catalog Archive Server Database Management System," Jan./Feb., pp. 30–37.
Thakar, Ani R., "Lessons Learned from the SDSS Catalog Archive Server," Nov./Dec., pp. 65–71.
Thakar, Ani R., "The Sloan Digital Sky Survey: Drinking from the Fire Hose," Jan./Feb., pp. 9–12.
Thakar, Ani R., see Szalay, Alex.
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Thijsse, Barend J., and Bert W. Rust, "Freestyle Data Fitting and Global Temperatures," Jan./Feb., pp. 49–59.
Thiruvathukal, George K., see Feiereisen, Bill.
Thiruvathukal, George K., see Kindratenko, Volodymyr.
Thiruvathukal, George K., see Kaylor, Joe.
Thiruvathukal, George K., and Konstantin Ldufer, "What I Did on My Summer Vacation," Nov./Dec., pp. 76–81.
Tinker, Robert F., and Qian Xie, "Applying Computational Science to Education: The Molecular Workbench Paradigm," Sep./Oct., pp. 24–27.
Tofan, Daniel, "Drawing Chemical Equipment with Adobe Illustrator, Part 1: Basic Drawing and Selection Tools," Nov./Dec., pp. 100–102.
Tohline, Joel E., see Silva, Claudio T.
Tohline, Joel E., "Where Is My Digital Holographic Display?," July/Aug., pp. 84–85.
Trawick, Matthew L., see Pancratov, Cosmin.
Trawick, Matthew L., see Pancratov, Cosmin.
Trawick, Matthew L., see Pancratov, Cosmin.
Tripiccione, Raffaele, see Goldrian, Gottfried.
Tsai, Shan-Ho, and David P. Landau, "Spin Dynamics: An Atomistic Simulation Tool for Magnetic Systems," Jan./Feb., pp. 72–79.
U
Ufimtsev, Ivan S., and Todd J. Martmnez, "Graphical Processing Units for Quantum Chemistry," Nov./Dec., pp. 26–34.
V
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Vadlamani, Srinath, see Pletzer, Alexander.
Vahi, Karan, see Miles, Simon.
Vakalis, Ignatios, see Gordon, Steven I.
Vallisneri, Michele, and Stanislav Babak, "Python and XML for Agile Scientific Computing," Jan./Feb., pp. 80–87.
VanCourt, Tom, see Herbordt, Martin C.
Vargas, Hictor, see Duro, Natividad.
Varoquaux, Gaël, "Agile Computer Control of a Complex Experiment," Mar./Apr., pp. 55–59.
Villalsn, Elena, "High-Dimensionality Data Reduction with Java," Sep./Oct., pp. 64–69.
W
Wang, Charlie C.L., see Zhou, Chuan.
Weppner, Stephen, "Computational Methods with Depth and Flair," Sep./Oct., pp. 5–8.
Wettig, Tilo, see Goldrian, Gottfried.
Wilson, Greg, see Matthews, David.
Wilson, Greg, "Those Who Will Not Learn From History...," May/June, pp. 5–6.
Winter, Frank, see Goldrian, Gottfried.
Wittich, Peter, see Dolgert, Andrew.
Wiziecki, Edee Norman, see Sendlinger, Shawn C.
Woodward, Paul R., Jagan Jayaraj, Pei-Hung Lin, and Pen-Chung Yew, "Moving Scientific Codes to Multicore Microprocessor CPUs," Nov./Dec., pp. 16–25.
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X
Xie, Qian, see Tinker, Robert F.
Y
Yang, Lin, see Liu, Yanling.
Yang, Xin, see Shi, Lei.
Yew, Pen-Chung, see Woodward, Paul R.
Z
Zheng, Yili, see Sayeed, Mohamed.
Zhou, Chuan, Xiaogang Jin, and Charlie C.L. Wang, "Efficient and Stable Simulation of Cloth Undergoing Large Rotations," July/Aug., pp. 30–40.
Subject Index
A
Anatomic Rendering & Visualization
"3D Face Visualization Using Grid Light," Lei Shi, Xin Yang, and Hailang Pan, Mar./Apr., pp. 48–54.
At Issue
"At Issue," Bill Feiereisen, and George K. Thiruvathukal, Mar./Apr., pp. 60–64.
"Those Who Will Not Learn From History...," Greg Wilson, May/June, pp. 5–6.
B
Books
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"Books," R. Torsten Clay, and Richard Gass, Mar./Apr., pp. 85–87.
"Computational Methods with Depth and Flair," Stephen Weppner, Sep./Oct., pp. 5–8.
"A Googol of Information about Google," Timothy P. Chartier, Nov./Dec., pp. 11–12.
"How Do Nerve Cells Compute?," Javier E. Hasbun, May/June, pp. 64–65.
"A Unique Textbook for Teaching Courses in Bioinformatics," Robert G. Gregerson, and Tim H. Lindblom, Jan./Feb., pp. 7–8.
C
Café Dubois
"Brain Cancer May Be the Least of Our Worries," Paul F. Dubois, May/June, pp. 7–8.
"Goodbye to All That," Paul F. Dubois, July/Aug., pp. 93–95.
"Sprinting Ain't Easy," Paul F. Dubois, Jan./Feb., pp. 70–71.
Climate Modeling
"Configuration Management for Large-Scale Scientific Computing at the UK Met Office," David Matthews, Greg Wilson, and Steve Easterbrook, Nov./Dec., pp. 56–64.
"Freestyle Data Fitting and Global Temperatures," Barend J. Thijsse, and Bert W. Rust, Jan./Feb., pp. 49–59.
Combinatorics in Computing
"Graph Analysis with High-Performance Computing," Bruce Hendrickson, and Jonathan W. Berry, Mar./Apr., pp. 14–19.
"Passing Messages to Lonely Numbers," Heiko Bauke, Mar./Apr., pp. 32–40.
"Sampling Binary Contingency Tables," Ivona Bezakova, Mar./Apr., pp. 26–31.
"A Unified Framework for Numerical and Combinatorial Computing," John R. Gilbert, Steve
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Reinhardt, and Viral B. Shah, Mar./Apr., pp. 20–25.
Computational Provenance
"Problem-Solving Methods for Understanding Process Executions," Jose Manuel Gsmez-Pirez, and Oscar Corcho, May/June, pp. 47–52.
"Provenance for Computational Tasks: A Survey," Juliana Freire, David Koop, Emanuele Santos, and Claudio T. Silva, May/June, pp. 11–21.
"Provenance in Comparative Analysis: A Study in Cosmology," Erik W. Anderson, James P. Ahrens, Katrin Heitmann, Salman Habib, and Claudio T. Silva, May/June, pp. 30–37.
"Provenance in High-Energy Physics Workflows," Andrew Dolgert, Lawrence Gibbons, Christopher D. Jones, Valentin Kuznetsov, Mirek Riedewald, Daniel Riley, Gregory J. Sharp, and Peter Wittich, May/June, pp. 22–29.
"Provenance: The Bridge Between Experiments and Data," Simon Miles, Paul Groth, Ewa Deelman, Karan Vahi, Gaurang Mehta, and Luc Moreau, May/June, pp. 38–46.
Computer Algebra
"Automatic Generation of Matlab Functions Using Mathematica and Thermath," Raquel S. Macedo, Marcelo F. Alfradique, and Marcelo Castier, July/Aug., pp. 41–49.
"A Generic Approach to Electronic Structure Calculations in Nanoscopic Systems," Jordan Kyriakidis, Jan./Feb., pp. 60–69.
Computer Simulations
"Molecular Motors: Design, Mechanism, and Control," Debashish Chowdhury, Mar./Apr., pp. 70–77.
"Numerical Simulation of Wave Propagation, Part I: Sequential Computing," Muhammad Sahimi, and S. Mehdi Vaez Allaei, May/June, pp. 66–75.
"Numerical Simulation of Wave Propagation, Part II: Parallel Computing," Muhammad Sahimi, and S. Mehdi Vaez Allaei, July/Aug., pp. 76–83.
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"Sheets: Entropy Dissipation, Multiscale Dynamics, Dispersion, and Intercalation," Ras B. Pandey, Kelly L. Anderson, and Barry L. Farmer, Nov./Dec., pp. 90–98.
"Spin Dynamics: An Atomistic Simulation Tool for Magnetic Systems," Shan-Ho Tsai, and David P. Landau, Jan./Feb., pp. 72–79.
Cybercommunities
"Community-Cyberinfrastructure-Enabled Discovery in Science and Engineering," Ahmed K. Elmagarmid, Arjmand Samuel, and Mourad Ouzzani, Sep./Oct., pp. 46–53.
D
Data Visualization
"An Integrated Exploration Approach to Visualizing Multivariate Particle Data," Chad Jones, Kwan-Liu Ma, Stiphane Ethier, and Wei-Li Lee, July/Aug., pp. 20–29.
E
Education
"Drawing Chemical Equipment with Adobe Illustrator, Part 1: Basic Drawing and Selection Tools," Daniel Tofan, Nov./Dec., pp. 100–102.
"Preparing Graduate Students for Interdisciplinary Careers," Matthias K. Gobbert, and Nagaraj K. Neerchal, Jan./Feb., pp. 93–95.
"Why Computer Architecture Matters," Cosmin Pancratov, Jacob M. Kurzer, Kelly A. Shaw, and Matthew L. Trawick, May/June, pp. 59–63.
"Why Computer Architecture Matters: Memory Access," Cosmin Pancratov, Jacob M. Kurzer, Kelly A. Shaw, and Matthew L. Trawick, July/Aug., pp. 71–75.
"Why Computer Architecture Matters: Thinking through Trade-offs in Your Code," Cosmin Pancratov, Jacob M. Kurzer, Kelly A. Shaw, and Matthew L. Trawick, Sep./Oct., pp. 74–79.
G
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Guest Editors' Introduction
"Combinatorics in Computing," Isabel Beichl, and Francis Sullivan, Mar./Apr., pp. 12–13.
"Computational Provenance," Claudio T. Silva, and Joel E. Tohline, May/June, pp. 9–10.
"High-Performance Computing Applications on Novel Architectures," Volodymyr Kindratenko, George K. Thiruvathukal, and Steven Gottlieb, Nov./Dec., pp. 13–15.
"High-Performance Computing Education," Scott Lathrop, and Thomas Murphy, Sep./Oct., pp. 9–11.
H
Hardware Multiagents
"Solving Complex Computational Problems Using Multiagents Implemented in Hardware," Hamid Reza Naji, Sep./Oct., pp. 54–63.
High-Performance Computing Education
"Applying Computational Science to Education: The Molecular Workbench Paradigm," Robert F. Tinker, and Qian Xie, Sep./Oct., pp. 24–27.
"Education, Outreach, and Training for High-Performance Computing," David Joiner, Charles Peck, Thomas Murphy, and Paul Gray, Sep./Oct., pp. 40–45.
"nanoHUB.org: Advancing Education and Research in Nanotechnology," Gerhard Klimeck, Michael McLennan, Sean P. Brophy, George B. Adams III, and Mark S. Lundstrom, Sep./Oct., pp. 17–23.
"A Shared, Interinstitutional Undergraduate Minor Program in Computational Science," Steven I. Gordon, Kate Carey, and Ignatios Vakalis, Sep./Oct., pp. 12–16.
"Transforming Chemistry Education through Computational Science," Shawn C. Sendlinger, Don J. DeCoste, Thom H. Dunning, Diana Avalos Dummitt, Eric Jakobsson, Dave R. Mattson, and Edee Norman Wiziecki, Sep./Oct., pp. 34–39.
"Transforming Scientists through Technical Education: A View from the Trenches," Deana D. Pennington, William K. Michener, Samantha Katz, Laura L. Downey, and Mark Schildhauer, Sep./
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Oct., pp. 28–33.
Human Anatomy Visualization
"Real-Time Photorealistic Virtual Human Anatomy," Yanling Liu, Jim X. Chen, and Lin Yang, Mar./Apr., pp. 41–47.
I
Interactive Systems
"An Integrated Virtual and Remote Control Lab: The Three-Tank System as a Case Study," Natividad Duro, Raquel Dormido, Hictor Vargas, Sebastian Dormido-Canto, Josi Sanchez, Gonzalo Farias, Francisco Esquembre, and Sebastian Dormido, July/Aug., pp. 50–59.
N
Nanoscale Computing
"Multiscale Simulation of Nanobiological Flows," Maria Fyta, Simone Melchionna, Efthimios Kaxiras, and Sauro Succi, July/Aug., pp. 10–19.
News
"Coming Soon: Research in a Cloud," Pam Frost Gorder, Nov./Dec., pp. 6–10.
"Computer Vision, Inspired by the Human Brain," Pam Frost Gorder, Mar./Apr., pp. 6–11.
"Medical Software has Astronomers Seeing Stars," Pam Frost Gorder, July/Aug., pp. 4–9.
Novel Architectures
"Computing Models for FPGA-Based Accelerators," Martin C. Herbordt, Yongfeng Gu, Tom VanCourt, Josh Model, Bharat Sukhwani, and Matt Chiu, Nov./Dec., pp. 35–45.
"Graphical Processing Units for Quantum Chemistry," Ivan S. Ufimtsev, and Todd J. Martmnez, Nov./Dec., pp. 26–34.
"Moving Scientific Codes to Multicore Microprocessor CPUs," Paul R. Woodward, Jagan Jayaraj,
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Pei-Hung Lin, and Pen-Chung Yew, Nov./Dec., pp. 16–25.
"QPACE: Quantum Chromodynamics Parallel Computing on the Cell Broadband Engine," Gottfried Goldrian, Thomas Huth, Benjamin Krill, Jack Lauritsen, Heiko Schick, Ibrahim Ouda, Simon Heybrock, Dieter Hierl, Thilo Maurer, Nils Meyer, Andreas Schdfer, Stefan Solbrig, Thomas Streuer, Tilo Wettig, Dirk Pleiter, Karl-Heinz Sulanke, Frank Winter, Hubert Simma, Sebastiano Fabio Schifano, and Raffaele Tripiccione, Nov./Dec., pp. 46–54.
P
Performance Analysis
"Measuring High-Performance Computing with Real Applications," Mohamed Sayeed, Hansang Bae, Yili Zheng, Brian Armstrong, Rudolf Eigenmann, and Faisal Saied, July/Aug., pp. 60–70.
S
Scientific Programming
"Exposing Fortran Derived Types to C and Other Languages," Alexander Pletzer, Douglas McCune, Stefan Muszala, Srinath Vadlamani, and Scott Kruger, July/Aug., pp. 86–92.
"GPULib: GPU Computing in High-Level Languages," Peter Messmer, Paul J. Mullowney, and Brian E. Granger, Sep./Oct., pp. 70–73.
"Python and XML for Agile Scientific Computing," Michele Vallisneri, and Stanislav Babak, Jan./Feb., pp. 80–87.
"A Stroll through Domain-Driven Development with Naked Objects," Konstantin Läufer, May/June, pp. 76–83.
"A Virtual Computing Laboratory," Joe Kaylor, and George K. Thiruvathukal, Mar./Apr., pp. 65–69.
"What I Did on My Summer Vacation," George K. Thiruvathukal, and Konstantin Ldufer, Nov./Dec., pp. 76–81.
SDSS Science Archive
"CasJobs and MyDB: A Batch Query Workbench," Nolan Li, and Ani R. Thakar, Jan./Feb., pp. 18–
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29.
"The Catalog Archive Server Database Management System," Ani R. Thakar, Alex Szalay, George Fekete, and Jim Gray, Jan./Feb., pp. 30–37.
"Lessons Learned from the SDSS Catalog Archive Server," Ani R. Thakar, Nov./Dec., pp. 65–71.
"The Sloan Digital Sky Survey Data Archive Server," Eric H. Neilsen Jr., Jan./Feb., pp. 13–17.
"The Sloan Digital Sky Survey: Drinking from the Fire Hose," Ani R. Thakar, Jan./Feb., pp. 9–12.
"The sqlLoader Data-Loading Pipeline," Alex Szalay, Ani R. Thakar, and Jim Gray, Jan./Feb., pp. 38–48.
Simulation
"Efficient and Stable Simulation of Cloth Undergoing Large Rotations," Chuan Zhou, Xiaogang Jin, and Charlie C.L. Wang, July/Aug., pp. 30–40.
T
Technical Note
"High-Dimensionality Data Reduction with Java," Elena Villalsn, Sep./Oct., pp. 64–69.
Technologies
"Multiphysics Technologies," Michael A. Gray, Mar./Apr., pp. 82–84.
"The PlayStation 3 for High-Performance Scientific Computing," Jakub Kurzak, Alfredo Buttari, Piotr Luszczek, and Jack Dongarra, May/June, pp. 84–87.
"Sage: A New Mathematics Software System," Michael A. Gray, Nov./Dec., pp. 72–75.
The First Word
"Ave Atque Vale," Norman Chonacky, Nov./Dec., pp. 3–5.
"Back to the Future?," Norman Chonacky, May/June, pp. 3–4.
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"Coming to a Digital Library Near You," Norman Chonacky, Sep./Oct., pp. 3–4.
"Ten Years and Counting," Norman Chonacky, July/Aug., pp. 3.
"Turning a Page and Learning Something Useful," Norman Chonacky, Mar./Apr., pp. 4–5.
"Where in this World Are You?," Norman Chonacky, Jan./Feb., pp. 3–6.
The Last Word
"Curb Your Enthusiasm," Francis Sullivan, Jan./Feb., pp. 96.
"From First Principles--Gauging the Web's Impact on Scientific Journals," Charles Day, July/Aug., pp. 96.
"I Wandered Lonely as a Cloud," Francis Sullivan, May/June, pp. 88.
"The Irony of Craigslist," Charles Day, Mar./Apr., pp. 88.
"Software Makes Hardware," Charles Day, Nov./Dec., pp. 104.
"This Time for Sure," Francis Sullivan, Sep./Oct., pp. 80.
U
Using Python
"Agile Computer Control of a Complex Experiment," Gaël Varoquaux, Mar./Apr., pp. 55–59.
V
Visualization Corner
"Burning Issues in Tomography Analysis," Kyungmin Ham, Heath A. Barnett, and Leslie G. Butler, Mar./Apr., pp. 78–81.
"Direct Volume Rendering: A 3D Plotting Technique for Scientific Data," Steven P. Callahan, Jason
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H. Callahan, Carlos E. Scheidegger, and Claudio T. Silva, Jan./Feb., pp. 88–92.
"Scientific Exploration in the Era of Ocean Observatories," Antsnio Baptista, Bill Howe, Juliana Freire, David Maier, and Claudio T. Silva, May/June, pp. 53–58.
"Transfer-Function Specification for Rendering Disparate Volumes," Fabio F. Bernardon, Linh K. Ha, Steven P. Callahan, Joco L.D. Comba, and Claudio T. Silva, Nov./Dec., pp. 82–89.
"Where Is My Digital Holographic Display?," Joel E. Tohline, July/Aug., pp. 84–85.
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