Upload
leminh
View
239
Download
0
Embed Size (px)
Citation preview
Gene expression profiling in peripheral
T-cell lymphoma
Wing C Chan
City of Hope Medical Center
Wing C Chan
City of Hope National Medical Center
University of Nebraska Medical Center
Rationale for GEP studies on PTCL
The diagnosis of PTCL is challenging even among
expert hematopathologists compounded by the rarity
and diversity of PTCLs
May have a prominent reactive cellular infiltrate
masking the neoplastic cell population
No unique cytogenetic abnormality in the major PTCL
subtypes
Approximately 50 of the cases are categorized as
PTCL not otherwise specified (PTCL-NOS)
Gain better understanding of the biology of PTCL
including clinically significant pathways
International T-Cell Lymphoma Project J Clin Oncol 264124-4130 2008
Frequency of common subtypes of PTCL
not other specified
PTCL-NOS
AITLALCL
ATLL
ENKTCL
SPECS Strategic Partnering to Evaluate Cancer SignaturesiPTCL International peripheral T-cell lymphomaLLMPP Lymphoma and Leukemia Molecular Profiling ProjectSingapore
PTCL subtype and ENKTL cases with acceptable GEP
Lymphoma subtypes
o
f c
as
es
n=372 cases
PTCL- subtypes
Gene expression profiling data was generated on HG U133 plus 2 arrays ( Affymetrix Inc)
Refinement of molecular diagnostic signatures for PTCL subgroups
Relative Level of Expression (x median value)
Unique molecular signatures were identified for major PTCL entities
Relative Level of Expression (x median value)
AITL ALK- NKALK+
ALCL
TATTL
ENKTL
PTCL-NOS
Blood 2014 May 8123(19)2915-23Lymphoma and Leukemia Molecular Profiling Project (LLMPP) initiative
-of 152 PTCL-NOS cases a subset of cases were classified into
i AITL [14]
ii ALK(-)ALCL [11]
iii ATLL [03]
iv - PTCL [09]
- Of 117 AITL cases 26 cases (22) changed to PTCL-NOS
Evaluation of pathological vs molecular diagnosis
Blood 2014 May 8123(19)2915-23
ALK(+) ALCL
mdash MYC induced gene signaturemdash Proliferation signaturemdash NF-B target signature
mdash IL10 induced signaturemdash STAT3 signaturemdash Treg gene signaturemdash Presence of B cellsmdash HIF-alpha induced gene signature
ALK(-)ALCL
ALK(-)ALCL
mdash Proliferation signature mdash MYC induced gene signaturemdash IRF4 induced gene signaturemdash Absence of TCR signaling molecules
Gene set enrichment analysis
Gene signaturepathway enrichment summary in ALK(-)ALCL
ALK(-) ALCL is molecularly distinct from PTCL-NOS and ALK(+)ALCL
Re-classified from PTCL-NOS
ALKALK
ALK(+) ALCL ALK(-) ALCL PTCL-NOS
Blood 2014 May 8123(19)2915-23
Robust molecular signature for ALK(-)ALCL
Parilla Castellar et al Blood 2014August 28 124(9)1473-1480
DUSP22 and TP63 rearrangements in ALK- ALCL
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
University of Nebraska Medical Center
Rationale for GEP studies on PTCL
The diagnosis of PTCL is challenging even among
expert hematopathologists compounded by the rarity
and diversity of PTCLs
May have a prominent reactive cellular infiltrate
masking the neoplastic cell population
No unique cytogenetic abnormality in the major PTCL
subtypes
Approximately 50 of the cases are categorized as
PTCL not otherwise specified (PTCL-NOS)
Gain better understanding of the biology of PTCL
including clinically significant pathways
International T-Cell Lymphoma Project J Clin Oncol 264124-4130 2008
Frequency of common subtypes of PTCL
not other specified
PTCL-NOS
AITLALCL
ATLL
ENKTCL
SPECS Strategic Partnering to Evaluate Cancer SignaturesiPTCL International peripheral T-cell lymphomaLLMPP Lymphoma and Leukemia Molecular Profiling ProjectSingapore
PTCL subtype and ENKTL cases with acceptable GEP
Lymphoma subtypes
o
f c
as
es
n=372 cases
PTCL- subtypes
Gene expression profiling data was generated on HG U133 plus 2 arrays ( Affymetrix Inc)
Refinement of molecular diagnostic signatures for PTCL subgroups
Relative Level of Expression (x median value)
Unique molecular signatures were identified for major PTCL entities
Relative Level of Expression (x median value)
AITL ALK- NKALK+
ALCL
TATTL
ENKTL
PTCL-NOS
Blood 2014 May 8123(19)2915-23Lymphoma and Leukemia Molecular Profiling Project (LLMPP) initiative
-of 152 PTCL-NOS cases a subset of cases were classified into
i AITL [14]
ii ALK(-)ALCL [11]
iii ATLL [03]
iv - PTCL [09]
- Of 117 AITL cases 26 cases (22) changed to PTCL-NOS
Evaluation of pathological vs molecular diagnosis
Blood 2014 May 8123(19)2915-23
ALK(+) ALCL
mdash MYC induced gene signaturemdash Proliferation signaturemdash NF-B target signature
mdash IL10 induced signaturemdash STAT3 signaturemdash Treg gene signaturemdash Presence of B cellsmdash HIF-alpha induced gene signature
ALK(-)ALCL
ALK(-)ALCL
mdash Proliferation signature mdash MYC induced gene signaturemdash IRF4 induced gene signaturemdash Absence of TCR signaling molecules
Gene set enrichment analysis
Gene signaturepathway enrichment summary in ALK(-)ALCL
ALK(-) ALCL is molecularly distinct from PTCL-NOS and ALK(+)ALCL
Re-classified from PTCL-NOS
ALKALK
ALK(+) ALCL ALK(-) ALCL PTCL-NOS
Blood 2014 May 8123(19)2915-23
Robust molecular signature for ALK(-)ALCL
Parilla Castellar et al Blood 2014August 28 124(9)1473-1480
DUSP22 and TP63 rearrangements in ALK- ALCL
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
International T-Cell Lymphoma Project J Clin Oncol 264124-4130 2008
Frequency of common subtypes of PTCL
not other specified
PTCL-NOS
AITLALCL
ATLL
ENKTCL
SPECS Strategic Partnering to Evaluate Cancer SignaturesiPTCL International peripheral T-cell lymphomaLLMPP Lymphoma and Leukemia Molecular Profiling ProjectSingapore
PTCL subtype and ENKTL cases with acceptable GEP
Lymphoma subtypes
o
f c
as
es
n=372 cases
PTCL- subtypes
Gene expression profiling data was generated on HG U133 plus 2 arrays ( Affymetrix Inc)
Refinement of molecular diagnostic signatures for PTCL subgroups
Relative Level of Expression (x median value)
Unique molecular signatures were identified for major PTCL entities
Relative Level of Expression (x median value)
AITL ALK- NKALK+
ALCL
TATTL
ENKTL
PTCL-NOS
Blood 2014 May 8123(19)2915-23Lymphoma and Leukemia Molecular Profiling Project (LLMPP) initiative
-of 152 PTCL-NOS cases a subset of cases were classified into
i AITL [14]
ii ALK(-)ALCL [11]
iii ATLL [03]
iv - PTCL [09]
- Of 117 AITL cases 26 cases (22) changed to PTCL-NOS
Evaluation of pathological vs molecular diagnosis
Blood 2014 May 8123(19)2915-23
ALK(+) ALCL
mdash MYC induced gene signaturemdash Proliferation signaturemdash NF-B target signature
mdash IL10 induced signaturemdash STAT3 signaturemdash Treg gene signaturemdash Presence of B cellsmdash HIF-alpha induced gene signature
ALK(-)ALCL
ALK(-)ALCL
mdash Proliferation signature mdash MYC induced gene signaturemdash IRF4 induced gene signaturemdash Absence of TCR signaling molecules
Gene set enrichment analysis
Gene signaturepathway enrichment summary in ALK(-)ALCL
ALK(-) ALCL is molecularly distinct from PTCL-NOS and ALK(+)ALCL
Re-classified from PTCL-NOS
ALKALK
ALK(+) ALCL ALK(-) ALCL PTCL-NOS
Blood 2014 May 8123(19)2915-23
Robust molecular signature for ALK(-)ALCL
Parilla Castellar et al Blood 2014August 28 124(9)1473-1480
DUSP22 and TP63 rearrangements in ALK- ALCL
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
SPECS Strategic Partnering to Evaluate Cancer SignaturesiPTCL International peripheral T-cell lymphomaLLMPP Lymphoma and Leukemia Molecular Profiling ProjectSingapore
PTCL subtype and ENKTL cases with acceptable GEP
Lymphoma subtypes
o
f c
as
es
n=372 cases
PTCL- subtypes
Gene expression profiling data was generated on HG U133 plus 2 arrays ( Affymetrix Inc)
Refinement of molecular diagnostic signatures for PTCL subgroups
Relative Level of Expression (x median value)
Unique molecular signatures were identified for major PTCL entities
Relative Level of Expression (x median value)
AITL ALK- NKALK+
ALCL
TATTL
ENKTL
PTCL-NOS
Blood 2014 May 8123(19)2915-23Lymphoma and Leukemia Molecular Profiling Project (LLMPP) initiative
-of 152 PTCL-NOS cases a subset of cases were classified into
i AITL [14]
ii ALK(-)ALCL [11]
iii ATLL [03]
iv - PTCL [09]
- Of 117 AITL cases 26 cases (22) changed to PTCL-NOS
Evaluation of pathological vs molecular diagnosis
Blood 2014 May 8123(19)2915-23
ALK(+) ALCL
mdash MYC induced gene signaturemdash Proliferation signaturemdash NF-B target signature
mdash IL10 induced signaturemdash STAT3 signaturemdash Treg gene signaturemdash Presence of B cellsmdash HIF-alpha induced gene signature
ALK(-)ALCL
ALK(-)ALCL
mdash Proliferation signature mdash MYC induced gene signaturemdash IRF4 induced gene signaturemdash Absence of TCR signaling molecules
Gene set enrichment analysis
Gene signaturepathway enrichment summary in ALK(-)ALCL
ALK(-) ALCL is molecularly distinct from PTCL-NOS and ALK(+)ALCL
Re-classified from PTCL-NOS
ALKALK
ALK(+) ALCL ALK(-) ALCL PTCL-NOS
Blood 2014 May 8123(19)2915-23
Robust molecular signature for ALK(-)ALCL
Parilla Castellar et al Blood 2014August 28 124(9)1473-1480
DUSP22 and TP63 rearrangements in ALK- ALCL
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
Refinement of molecular diagnostic signatures for PTCL subgroups
Relative Level of Expression (x median value)
Unique molecular signatures were identified for major PTCL entities
Relative Level of Expression (x median value)
AITL ALK- NKALK+
ALCL
TATTL
ENKTL
PTCL-NOS
Blood 2014 May 8123(19)2915-23Lymphoma and Leukemia Molecular Profiling Project (LLMPP) initiative
-of 152 PTCL-NOS cases a subset of cases were classified into
i AITL [14]
ii ALK(-)ALCL [11]
iii ATLL [03]
iv - PTCL [09]
- Of 117 AITL cases 26 cases (22) changed to PTCL-NOS
Evaluation of pathological vs molecular diagnosis
Blood 2014 May 8123(19)2915-23
ALK(+) ALCL
mdash MYC induced gene signaturemdash Proliferation signaturemdash NF-B target signature
mdash IL10 induced signaturemdash STAT3 signaturemdash Treg gene signaturemdash Presence of B cellsmdash HIF-alpha induced gene signature
ALK(-)ALCL
ALK(-)ALCL
mdash Proliferation signature mdash MYC induced gene signaturemdash IRF4 induced gene signaturemdash Absence of TCR signaling molecules
Gene set enrichment analysis
Gene signaturepathway enrichment summary in ALK(-)ALCL
ALK(-) ALCL is molecularly distinct from PTCL-NOS and ALK(+)ALCL
Re-classified from PTCL-NOS
ALKALK
ALK(+) ALCL ALK(-) ALCL PTCL-NOS
Blood 2014 May 8123(19)2915-23
Robust molecular signature for ALK(-)ALCL
Parilla Castellar et al Blood 2014August 28 124(9)1473-1480
DUSP22 and TP63 rearrangements in ALK- ALCL
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
-of 152 PTCL-NOS cases a subset of cases were classified into
i AITL [14]
ii ALK(-)ALCL [11]
iii ATLL [03]
iv - PTCL [09]
- Of 117 AITL cases 26 cases (22) changed to PTCL-NOS
Evaluation of pathological vs molecular diagnosis
Blood 2014 May 8123(19)2915-23
ALK(+) ALCL
mdash MYC induced gene signaturemdash Proliferation signaturemdash NF-B target signature
mdash IL10 induced signaturemdash STAT3 signaturemdash Treg gene signaturemdash Presence of B cellsmdash HIF-alpha induced gene signature
ALK(-)ALCL
ALK(-)ALCL
mdash Proliferation signature mdash MYC induced gene signaturemdash IRF4 induced gene signaturemdash Absence of TCR signaling molecules
Gene set enrichment analysis
Gene signaturepathway enrichment summary in ALK(-)ALCL
ALK(-) ALCL is molecularly distinct from PTCL-NOS and ALK(+)ALCL
Re-classified from PTCL-NOS
ALKALK
ALK(+) ALCL ALK(-) ALCL PTCL-NOS
Blood 2014 May 8123(19)2915-23
Robust molecular signature for ALK(-)ALCL
Parilla Castellar et al Blood 2014August 28 124(9)1473-1480
DUSP22 and TP63 rearrangements in ALK- ALCL
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
ALK(+) ALCL
mdash MYC induced gene signaturemdash Proliferation signaturemdash NF-B target signature
mdash IL10 induced signaturemdash STAT3 signaturemdash Treg gene signaturemdash Presence of B cellsmdash HIF-alpha induced gene signature
ALK(-)ALCL
ALK(-)ALCL
mdash Proliferation signature mdash MYC induced gene signaturemdash IRF4 induced gene signaturemdash Absence of TCR signaling molecules
Gene set enrichment analysis
Gene signaturepathway enrichment summary in ALK(-)ALCL
ALK(-) ALCL is molecularly distinct from PTCL-NOS and ALK(+)ALCL
Re-classified from PTCL-NOS
ALKALK
ALK(+) ALCL ALK(-) ALCL PTCL-NOS
Blood 2014 May 8123(19)2915-23
Robust molecular signature for ALK(-)ALCL
Parilla Castellar et al Blood 2014August 28 124(9)1473-1480
DUSP22 and TP63 rearrangements in ALK- ALCL
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
Parilla Castellar et al Blood 2014August 28 124(9)1473-1480
DUSP22 and TP63 rearrangements in ALK- ALCL
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
NFkB2 GSP5
NFkB2 GSP54
NCOR2 GSP99
PABPC4 GSP50
ROS1
TYK2
ROS1
TYK2
Novel fusions combining a transcription factor
(NFkB2 or NCOR2) with a tyrosine kinase (ROS1
or TYK2)
Crescenzo and Abate etal Cancer Cell 2015
JAKSTAT3 pathway activation through
mutations and fusion transcripts
JAK1 and STAT3 mutations
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
₋ AITL₋ ATLL₋ ALK(-)ALCL₋ ALK(+)ALCL₋ NKCL₋ -PTCL
n=251 n=121
32 PTCL-NOS
WHO recognized TNK tumor subtypes
One-third of PTCL-NOS cases were not molecularly classified into WHO recognized PTCL entities
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
GATA3Unclassifiable
TBX21
37 0920 14149 208
nmedian OS
(years)
Time (years)
Pro
po
rtio
n (
OS
)
p=001
(B)
PTCL-NOS can be further divided two major subgroups
(A)
Pro
bab
ilit
y
(LO
OC
V)
TBX21
GATA3
Probability in TBX21 subgroup
Probability in GATA3 subgroup
TBX21 Unclassifiable GATA3
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
Tianjiao Wang et al Blood 20141233007-3015
GATA3 expression identifies a subset of
PTCL NOS with inferior survival
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
T-bet expression in Chinese PTCL cohort (n=142)
Ren YL etal Am J Clin Pathol 2012 Sep138(3)435-47
AITL
PTCL-NOS
TBX21 expression by Immunohistochemistry is
Predictive of survival in PTCL
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
p=02 p=005
Quartile
(D)
HampE CD3 TIA1
(B)
TIA1HampE CD3
(C)
Pro
po
rtio
n
Time (years)Time (years)
Cytotoxic
Pan-B
plasma-cell
Immunoglobulin
Cytotoxic- plasma
cell signature
sig
na
ture
Q1Q2Q3Q4
Q4Q1+Q2+Q3
OS in TBX21 subgroupOS in TBX21 subgroupQ1 Q2 Q3 Q4
Tumor microenvironment significantly influences the prognosis in TBX21 subgroup of PTCL-NOS
Blood 2014 May 8123(19)2915-23
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
University of Nebraska Medical Center
Training 41
Validation 42
Samples divided into Training
andvalidation set
Cases divided to minimize OS bias
Survival model Creation
P53 upregulatedCytotoxic T
Monocytic
B-cell
Other gene signature
AITL OS in different cohorts
International PTCL consortiumEurope (French AITL series)Europe (Italian AITL seriesLLMPP seriesAsian Singapore
10
08
06
04
02
00
2 4 6 8 10 12 14
Time (years)Time (years)
Time (years)
Pro
po
rtio
n
Pro
po
rtio
n
Pro
po
rtio
n
OS in training set10
08
06
04
02
00 Plt0001
Survival model creation in AITL
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
Signature Cluster Effect of high expression
Trainingp-value
Validation p-value
p53 upregulated signature Poor prognosis 0001 0014
Cytotoxic signature Poor prognosis 0005 0046
Monocyticdendritic signature Poor prognosis 0011 0010
B- cell signatureGood prognosis 0002 0017
Quartile
p=0004
Validation set
Survival prediction on AITL role of tumor microenvironment
Tumor microenvironment significantly influences the prognosis in AITL
Role of macrophages (M1) vs (M2) and dendritic cells are being investigated
10
08
06
04
02
00
Training set
Plt0001
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
IDH2 mutation is specifically associated with molecularly defined AITL cases
Chao etal ( under review)
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
RhoA mutation map in PTCL
GTPMg++-binding ldquoboxesrdquo
PKNPRK1 binding site
Effector region ldquoSwitch Irdquo
AITL G17E case includes an S26R mutation in same clone
^ K18M major clone has G17V minor clone
PTCL NOS
ALCL ALK-
G17V
G17E
x27
K18M^
S26R
G17V x10
D120G K135T
number ( of screened)
G17 S26 Other
AITL (n=39)deg 28 (718) 0 1 (26)^
PTCL NOS (n=41)
Tbx21 (n=19) 5 (263) 1 (53) 0
Gata3 (n=12) 2 (182) 0 0
Unclassified (n=10)deg 3 (333) 0 0
ALCL ALK- (n=12) 0 0 1 (83)
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
STAT3 and 5B mutations identified in NK or γδ-T cell derived lymphomas
Kucuk C Nat Commun 2015 Jan 1466025
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
Cell Membrane
IL2
Extracellular Space
IL2Rβ
IL2Rγα
IL2Rγ
JAK12 P
Cytoplasm
Nuclear Membrane Nuclear Membrane
STAT5B
STAT5B
STAT5B
STAT5B
P
P
P
STAT3
AZD1480
STAT3 STAT3
DNA
N642H
bullTarget (IL2Rα mir155hg BCL-XLhellip) transcription
bullPromotion of cell growth and survival
P
P
6 NKTCLs
46 γδ-PTCLs
6 NKTCLs
35 γδ-PTCLs
Increase affinity
prolonged association
Increase target
site
occupancy
P
P
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
Cell-of-origin for PTCL subgroups Can that be assigned
Adapte
d f
rom
OS
hea a
nd P
aul 2
010
Scie
nce
AITL
PTCL-GATA3Th2 subgroup
PTCL-NOSTh1 subgroup
ALCL (ALK+)
ALCL (ALK-)
ATLL
T PTCL
Laurence de Leval and Philippe Gaulard Blood 20141232909-2910
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab
LAB MEMBERS
Tim McKeithan Andrew Canonn
Javeed Iqbal Zhongfeng Liu
Alyssa Bouska Shaungping Guo
Can Kucuk Karen Deffenbacher
Xiaozhou Hu Cuiling Liu
Bei Jiang
Weiwei Zhang
Chao Wang
Joe Rohr
Cindy Lachel
Yuping Li
Xinhua Wang
Kai Fu
Tim Greiner
Dennis Weisenburger
Julie Vose
I-PTCL
LLMPP
Nordic and ACT
Sichuan University
Singapore
Hong Kong
Iqbal Lab