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Persson et al.
ONLINE REPOSITORY TITLE PAGE
Supplementary Material
Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals
distinct gene expression profiles
Helena Persson, PhD,a¶, Andrew T Kwon, PhD,b,c, Jordan A Ramilowski, PhD,b,c, Gilad
Silberberg, PhD,d, Cilla Söderhäll, PhD,a,e, Christina Orsmark-Pietras, PhD,a§, Björn
Nordlund, RN, PhD,e,f,g, Jon R Konradsen, MD, PhD,e,f,g, Michiel JL de Hoon, PhD,b,c, Erik
Melén, MD, PhD,e,h,i, Yoshihide Hayashizaki, MD, Profb,j, Gunilla Hedlin, MD, Profe,f,g, Juha
Kere, MD, Profa,e,k,l and Carsten O Daub, PhDa,b,c
aDept of Biosciences and Nutrition and Center for Innovative Medicine (CIMED), Karolinska
Institutet (KI), Stockholm, Sweden, bOmics Science Center, RIKEN Yokohama Institute,
Yokohama, Japan†, cDivision of Genomic Technologies, RIKEN Center for Life Science
Technologies, Yokohama, Japan, dUnit of Computational Medicine, Dept of Medicine, KI,
eCentre for Allergy Research, KI, fAstrid Lindgren Children’s Hospital, Karolinska University
Hospital, Stockholm, Sweden, gDept of Women’s and Children’s Health, KI, hInstitute of
Environmental Medicine, KI, iSachs’ Children’s Hospital, Stockholm, Sweden, jPreventive
Medicine and Diagnosis Innovation Program, RIKEN Research Cluster for Innovation, Wako,
Japan, kFolkhälsan Institute of Genetics, Helsinki, Finland, lResearch Programs Unit,
University of Helsinki, Helsinki, Finland.
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†RIKEN Omics Science Center ceased to exist as of April 1st, 2013, due to RIKEN
reorganization.
§Present address: Division of Oncology and Pathology, Dept of Clinical Sciences, Lund, Lund
University, Lund, Sweden.
¶Present address: Division of Clinical Genetics, Dept of Laboratory Medicine, Lund, Lund
University, Lund, Sweden.
Corresponding author
Prof Juha Kere
Karolinska Institutet
Dept of Biosciences and Nutrition
Hälsovägen 7-9
SE-141 83 Huddinge
Sweden
Tel: +46-8-524 810 57
Fax: +46-8-774 55 38
Email: [email protected]
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SUPPLEMENTARY METHODSChildren with controlled persistent asthma (CA, n = 15) and therapy-resistant asthma (SA, n =
15) were selected from the Swedish Search study, for which the details on inclusion criteria
and clinical examination procedures have been described previouslyE1, E2. Blood samples were
available for 25 out of 33 children with therapy-resistant asthma, and the 20 children with the
lowest scores (≤20) on the asthma control test (ACT) were selected for microarray analysisE2.
The Swedish Search study also included 39 children with controlled persistent asthma and 20
of these were used for microarray analysis. They were selected to have the highest ACT
scores (21-26) and match the age of the children with therapy-resistant asthma. Healthy
controls (CTRL, n = 19, whereof 10 used in this study) were recruited at Astrid Lindgren
Children’s Hospital, Stockholm, among children admitted for elective surgical procedures
unrelated to asthma. Blood samples were collected prior to the surgical procedure as
described previouslyE2. For the present study we selected samples with sufficient amounts of
remaining RNA and good quality microarray data, resulting in group sizes of 10 (CTRL), 15
(CA), and 15 (SA). After quality control of the CAGE data three samples were excluded,
leaving the sample numbers 9 (CTRL), 15 (CA), and 13 (SA). Informed consent was obtained
from all participating children and their parents and the study was approved by the local ethics
committee. For statistical analysis of clinical parameters, normally distributed data are
summarized by mean and standard deviation (sd) and compared using Student’s t-test. Non-
normally distributed data are presented as median and inter-quartile range (IQR), and
compared with the Mann-Whitney U test. Age- and sex-adjusted body mass index (BMI)
percentiles were calculated using the online BMI Percentile Calculator for Child and TeenE3.
RNA extraction and sequencing
The RNA had been extracted previouslyE2. Briefly, buffy coats were isolated by centrifugation
of whole blood and total RNA was extracted using the RiboPure-Blood Kit (Life
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Technologies) according to the manufacturer’s instructions. RNA quantity and quality were
assessed using NanoDrop 8000 and the Agilent 2100 Bioanalyzer. Sample preparation and
Heliscope CAGE sequencing were performed as described previouslyE4.
Sequence data processing
Reads were aligned to the human ribosomal DNA complete repeating unit using rRNAdust
(author T. Lassmann), an implementation of Myers’ bit parallel dynamic programming
algorithmE5. All reads with an edit distance smaller than or equal to 2 were discarded and the
remaining reads were mapped to the human genome (hg19) using Delve v 0.95E6. Mapped
reads were discarded if they had a Phred mapping quality below 20, mapped outside
chromosome boundaries or had a sequence identity below 85%. Remaining reads were
clustered using Paraclu 5E7 with a minimum tag count of 10 reads, a maximum cluster length
of 200 bp and a maximum density to baseline density ratio of 1 or greater. Tag clusters were
then annotated by based on GENCODE V10 transcript modelsE8 using custom-developed
scripts. The TSS tag cluster for hemoglobin, beta (HBB) was removed from the dataset; this
mRNA is highly expressed and specifically stabilized in erythrocytesE9 that contaminate buffy
coat preparations. On average 30% of sequencing reads mapped to the TSS for HBB, which
could skew the calculation of expression in tags per million reads (tpm) for all transcripts.
Final group sizes after quality control were CTRL: n = 9, CA: n = 15, and SA: n = 13.
Differential expression analysis
Differential expression analysis was done in R with edgeR 3.2.3E10 using tagwise dispersion
estimate and default parameters for all tag clusters expressed by at least 3 reads in at least 9
samples. A Benjamini-Hochberg false discovery rate (FDR) below 0.1 was used as the cut-off
for significantly differentially expressed tag clusters. A cut-off of p < 0.05 produced similar
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results but retained fewer genes for downstream enrichment analyses. For the generalized
linear model analysis, we used the following formula:
Ei=b0+b11¿
where
Ei = expression level (tag counts) for tag cluster i,
b0 = coefficient of expression for tag cluster i in CTRL
b1..2 = coefficients of expression in CA and SA, respectively, relative to CTRL,
b3..5 = slopes for the association between expression and cell counts,
[neutrophil] = neutrophil fractions of the total leukocyte counts,
[lymphocyte] = lymphocyte fractions of the total leukocyte counts,
[eosinophil] = eosinophil fractions of the total leukocyte counts,
ei = error term for tag cluster i
Cell fractions were calculated by dividing the cell counts by the total leukocyte counts for
each sample. Monocyte fraction was not used in the formula to avoid multicolinearity.
The databases for Gene Ontology (GO) version 2.9.0 and Kyoto Encyclopedia of Genes and
Genomes (KEGG) version 2.9.1 were obtained from BioconductorE11 and enrichment was
analyzed with GOseq 1.12.0E12 using default settings. Hierarchical clustering was done in R
using Spearman rank correlation and the heatmap produced with gplots 2.11.3. For power
calculations we applied the SSPAE13 package 2.4.0 from Bioconductor. The microarray
dataset for adult severe asthmaticsE14 was obtained from the Gene Expression OmnibusE15
(accession number GDS4425) and the Affymetrix Human Genome U133 Plus 2.0 probe
identifiers were converted to gene symbols using tables from Ensembl BioMartE16. Heatmaps
were produced as before but using Pearson correlation. Bootstrapping analysis of cluster
stability was done with the pvclust R packageE17.
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Identification and validation of novel transcription start sites
Novel transcription start sites (TSSs) were identified among differentially expressed tag
clusters without overlapping exonic annotation, i.e. intergenic, intronic and antisense tag
clusters. These were filtered for the presence of supporting publicly available mRNA and
expressed sequence tag (EST) data from the UCSC Genome BrowserE18. A high-confidence
set of novel TSSs supported by spliced ESTs was manually curated for experimental
validation by RT-PCR and Sanger sequencing. 800 ng DNase-treated RNA from two CTRL
samples was used for cDNA synthesis with the SuperScript III First-Strand cDNA Synthesis
kit (Life Technologies) according to the manufacturer’s instructions. Negative control
reactions with RNA but without reverse transcriptase (no RT) were run in parallel. The cDNA
was diluted 1:2 and 1 µl was used for PCR amplification with HotStarTaq Plus DNA
Polymerase (QIAGEN) in a 25 µl reaction using the temperature profile 95°C 5 min, followed
by 35 cycles of 94°C 30 s, 58°C 45 s, 72°C 1 min and a final elongation step at 72°C for 10
min. Primers are listed in Table E1 in the Online Repository. Products were visualized on 2%
agarose gels and purified with the QIAquick PCR Purification Kit, or where indicated in
Figure E5 (see the Online Repository), with the QIAquick Gel Extraction Kit (QIAGEN).
Purified PCR products were sequenced using both forward and reverse PCR primers.
Comparison of differentially expressed tag clusters to loci genetically associated with
asthma
HaploReg v2E19 was used to retrieve information for single nucleotide polymorphisms (SNPs)
in linkage disequilibrium (LD, r2 > 0.8 based on the 1000 Genomes Phase 1 European sample)
with 62 SNPs found to have genome-wide significant association with asthma collected from
17 studiesE20. LD blocks were defined as the interval from the first to the last SNP within LD
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from the query SNP (based on SNPs that are polymorphic in the European population).
Intersection and manipulation of genetic intervals was done with BEDToolsE21.
Motif activity response analysis (MARA)
The human genome (hg19) was scanned for SwissRegulon motif hits using MotEvoE22 and
motif activities were calculated as described previouslyE23. A reduced set of CAGE tag
clusters (n = 9,268) was selected to include only clusters differentially expressed between any
two phenotypes with unadjusted p-value < 0.1 and located in sense orientation within 500 bp
of a known TSS or in the 5' untranslated region (UTR) of a transcript. This filtered set was
used together with the tag clusters representing novel TSSs as input for motif activity
calculations. Two intervals surrounding each tag cluster were analyzed: -300 to +100 bp and -
1000 to +200 bp. We applied linear regression analysis based on Gaussian distribution to the
standard normal deviates of the motif activities (where the standardized motif activities were
divided by the associated standard deviations) and the cell count fractions. Weighted mean
motif activities were calculated for each disease group, which were then regularized by
adding the minimum mean activity to each value. Differences in the motif activities among
the disease groups were determined by log likelihood of the weighted mean activities.
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Table E1. Primers for validation of novel transcription start sites (TSSs) by RT-PCR and Sanger sequencing.
TSS Gene Forward primer Reverse primerAlternative TSSschr2:24714142(+) NCOA1 GGCTGAAATGCCTGTTCTTC TCTCACCTCATTTAAGGCCAATchr2:143828538(+) ARHGAP15 TCCTTGAAGCCAGCTACCAC TCTCATTTGCACAGCTCCTGchr4:148973914(+) ARHGAP10 GGAGGTCTAAGGGAGCTCAAA TGAGTTGGAGCTTGTTGTGGchr8:131370837(-) ASAP1 GTCAGCGCGTCTGAGGAG TCTGAAGGGCTGTTCTATCTTGchr9:117160251(-) AKNA/RP11-9M16.2 AGATTCGTTCACCCAGCAAC TGTGGAAGGGAAAACTGAGGchr13:46948966(-) KIAA0226L CAGGGACAGCATCATGTCAG CAGGGCTCCACAGGAGAATchr15:86087320(+) AKAP13 AAGCTTGCTCCTGCTAACCA TCGATGATGCCTCACAGAACchr16:90023689(+) DEF8 GCAGGTCAGGCTAGGAGCAC ACTCGGATGTTTGGCTCATCchr17:8316490(+) NDEL1 TCAGCTGAGGCCTGAGACAC GTGCCTCCAACTCTGCTTCTNovel transcriptschr6:105901520(+) lincRNA TGCCTATTTTTCCCTTTGAATC GCCAGCAATCCTTGGTATGTchr12:8605756(-) lincRNA GTTTCCAGTTCCCGTCAGAG CCCTTTGGTTGACATAGGAAAAntisense transcriptschr3:134314106(+) KY GCCGCCATGAGAAGAAGTAT CACGTCTCATGAGGTTCTGCchr14:95652012(+) CLMN/CTD-2240H23.2 GCAAGGCTCCACAGAGGAAT GAGACAGAGCAGCTTGACCA
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Table E2. Leukocyte counts (109 x L-1 blood) and sequencing library sizes from raw reads to the final dataset used for expression analysis (see Supplementary Methods in the Online repository for details on sequence data filtering including removal of the tag cluster corresponding to the transcription start site of hemoglobin, beta; HBB).
Sample WBC Neutrophils Eosinophils Lymphocytes Monocytes Raw reads Tagdust-filtered Single-mapping Ribosomal RNA HBB reads Used readsCTRL_136 5.7 2.5 0.2 2.6 0.4 41929091 36507811 11297347 799801 2060430 8437116CTRL_137 5.3 1.8 0.1 2.9 0.5 39439329 34498423 10089662 620701 1845282 7623679CTRL_138 5.2 2.3 0.1 2.4 0.4 36569638 31896470 9059613 340552 1764583 6954478CTRL_139 5.0 2.3 0.5 1.6 0.4 41358764 34775501 10840171 1091280 1726133 8022758CTRL_140 5.4 2.7 0.2 2.0 0.5 39750341 34853661 10276716 529912 1967784 7779020CTRL_141 6.0 2.4 0.9 2.2 0.3 38603448 33911862 10322656 442242 2908605 6971809CTRL_142 6.7 3.2 0.0 2.9 0.5 39307551 34171846 10900067 674615 1802162 8423290CTRL_143 7.4 3.3 0.2 3.3 0.5 41587193 35655824 11664788 759791 1666482 9238515CTRL_144 5.1 2.8 0.0 1.6 0.5 39460871 34583696 9389372 527139 1782885 7079348CA_145 4.4 1.9 0.2 1.9 0.4 30705525 26039110 7637725 343710 1394801 5899214CA_146 7.8 3.4 0.3 3.1 1.1 37251500 32361556 10098534 465291 1454372 8178871CA_147 5.6 2.1 0.5 2.6 0.4 31248188 26686495 7426827 357484 1542646 5526697CA_148 6.6 2.8 0.4 3.0 0.4 27540883 22920808 6719010 281639 1462439 4974932CA_149 3.2 1.1 0.1 1.8 0.2 35593298 30892797 8856120 471246 2230086 6154788CA_150 4.8 1.8 0.4 2.1 0.5 36767485 32135674 9091759 459152 1955120 6677487CA_151 9.0 3.7 0.2 4.3 0.7 41370710 36208108 11498074 1023503 2640684 7833887CA_152 8.2 3.3 0.6 3.5 0.7 40888613 35702105 10295012 664812 1782891 7847309CA_153 5.7 2.8 0.3 2.3 0.3 39314918 34412493 9179021 506841 1951400 6720780CA_154 5.3 2.1 0.1 2.7 0.3 36894042 32141608 8980126 454760 1403453 7121913CA_155 5.6 2.2 0.2 2.8 0.5 41579510 36599430 11165407 576750 1646091 8942566CA_156 4.7 1.7 0.0 2.5 0.4 38996385 33705917 8635752 345641 1233711 7056400CA_157 6.8 3.0 0.2 3.0 0.6 36579683 32251162 9068210 393988 1092152 7582070CA_158 5.5 2.5 0.2 2.4 0.4 36406385 32058579 8894748 436650 2385757 6072341CA_159 5.7 2.6 0.2 2.5 0.4 40518938 35241855 10625188 475423 1459557 8690208PSA_160 6.8 2.6 0.5 3.3 0.4 40175473 33509912 11462230 1166424 1698346 8597460PSA_161 9.5 5.9 0.3 2.8 0.3 29865095 25357932 7680526 383738 1290855 6005933PSA_162 9.2 4.6 0.5 3.6 0.5 37483512 32444148 11643412 713571 1231968 9697873PSA_164 6.8 3.8 0.4 2.1 0.4 35180876 30535939 7527584 380679 1092683 6054222PSA_165 6.5 3.9 0.4 1.8 0.4 35632175 30670582 9088163 326717 1431494 7329952PSA_166 6.4 3.4 0.4 2.1 0.5 24454614 20104132 5729018 193898 1416079 4119041PSA_167 6.5 3.9 0.2 2.0 0.4 34059952 29776921 9509636 441246 1242102 7826288PSA_168 11.4 6.8 0.4 3.7 0.2 27236973 22817399 6521704 221596 1534782 4765326PSA_169 5.1 2.3 0.5 1.9 0.4 38783421 33433617 11115169 476954 1297142 9341073PSA_171 4.1 2.1 0.0 1.6 0.3 38695589 33918035 10622287 425218 1870179 8326890PSA_172 4.2 1.8 0.1 1.6 0.6 37955413 33576259 10596080 450277 1447934 8697869PSA_173 4.4 2.2 0.1 1.8 0.3 41357566 36108407 11520521 654854 1329871 9535796PSA_174 5.7 2.0 0.2 3.0 0.4 33141756 28539899 8458145 411491 1252276 6794378
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Table E3. Differentially expressed tag clusters for CA vs CTRL.
TC logFC logCPM Adj. P Position Strand Annotation Transcript iD Gene symbol Description
chr10_+_35484802 1.87 3.29 5.22E-03 chr10:35484802-35484926 + TSS,SENST00000474931.1/ENST00000468236.1/ENST00000344351.5
CREM cAMP responsive element modulator
chr10_+_5136559 1.66 4.75 4.68E-05 chr10:5136559-5136636 + TSSregion500,S ENST00000480697.1 AKR1C3
aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)
chr10_+_70863831 -1.94 1.63 6.85E-02 chr10:70863831-70863845 + CDS_or_noncoding_last_exon,S
ENST00000242465.3/ENST00000462445.1 SRGN serglycin
chr10_+_89623808 -1.27 1.00 5.81E-02 chr10:89623808-89623866 + TSSregion500,S ENST00000462694.1/ENST00000487939.1 PTEN phosphatase and tensin
homolog
chr10_-_126849088 1.00 1.94 9.06E-02 chr10:126849088-126849149 - TSSregion500,SENST00000337195.5/ENST00000494626.2/ENST00000460976.1
CTBP2 C-terminal binding protein 2
chr10_-_64576013 -1.43 2.21 3.31E-02 chr10:64576013-64576175 - TSS,S ENST00000242480.3/ENST00000411732.1 EGR2 early growth response
2
chr10_-_72360161 1.36 3.64 3.55E-02 chr10:72360161-72360336 - CDS_or_noncoding_inner_exon,S
ENST00000373209.1/ENST00000318971.2/ENST00000441259.1
PRF1 perforin 1 (pore forming protein)
chr10_-_72362428 1.11 3.90 8.75E-02 chr10:72362428-72362431 - TSSregion500,SENST00000373209.1/ENST00000318971.2/ENST00000441259.1
PRF1 perforin 1 (pore forming protein)
chr10_-_72362434 1.00 6.94 7.05E-02 chr10:72362434-72362546 - TSS,SENST00000373209.1/ENST00000318971.2/ENST00000441259.1
PRF1 perforin 1 (pore forming protein)
chr11_+_47412796 -1.41 0.79 8.29E-02 chr11:47412796-47412929 + CDS_or_noncoding_first_intron,AS ENST00000527426.1 RP11-750H9.5
chr11_+_71846707 -1.74 4.68 8.19E-02 chr11:71846707-71846814 + TSS,S
ENST00000445078.2/ENST00000456237.1/ENST00000442948.2/ENST00000325101.4
FOLR3 folate receptor 3 (gamma)
chr11_-_10821157 -2.00 -0.34 6.90E-02 chr11:10821157-10821275 - TSS,S ENST00000525606.1 EIF4G2eukaryotic translation initiation factor 4 gamma, 2
chr11_-_118081285 -1.71 3.46 1.11E-02 chr11:118081285-118081437 - CDS_or_noncoding_inner_exon,S
ENST00000356289.5/ENST00000292067.7/ENST00000533261.1/ENST00000526595.1/ENST00000526620.1/ENST00000537867.1/
AMICA1adhesion molecule, interacts with CXADR antigen 1
1313
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ENST00000524477.1/ENST00000527877.1/ENST00000525565.1/ENST00000534294.1/ENST00000529164.1/ENST00000531536.1
chr11_-_3849257 -1.12 3.67 6.90E-02 chr11:3849257-3849449 - 5UTR_last_exon,S
ENST00000351018.4/ENST00000396979.1/ENST00000396978.1/ENST00000533217.1
RHOG ras homolog family member G
chr11_-_47381429 -0.96 3.42 9.06E-02 chr11:47381429-47381603 - CDS_or_noncoding_inner_exon,S
ENST00000378538.3/ENST00000227163.4/ENST00000533968.1
SPI1
spleen focus forming virus (SFFV) proviral integration oncogene spi1
chr11_-_85522024 0.84 4.57 5.20E-02 chr11:85522024-85522224 - TSS,S
ENST00000389960.4/ENST00000316356.4/ENST00000527523.1/ENST00000524830.1
SYTL2 synaptotagmin-like 2
chr12_+_90103535 -0.85 4.27 2.60E-02 chr12:90103535-90103643 + TSSregion500,AS ENST00000551310.1 ATP2B1ATPase, Ca++ transporting, plasma membrane 1
chr12_+_9795402 1.17 2.98 3.63E-02 chr12:9795402-9795522 + CDS_or_noncoding_first_exon,S ENST00000426641.2 GOT2P3
glutamic-oxaloacetic transaminase 2 pseudogene 3
chr12_-_106641666 -0.68 5.39 4.89E-02 chr12:106641666-106641802 - TSS,S ENST00000378026.4 CKAP4 cytoskeleton-associated protein 4
chr12_-_10875672 -1.67 2.99 3.48E-02 chr12:10875672-10875718 - TSSregion500,S
ENST00000279550.7/ENST00000228251.4/ENST00000540447.1/ENST00000536107.1
CSDA cold shock domain protein A
chr12_-_68845284 1.38 4.25 4.01E-02 chr12:68845284-68845483 - TSS,S ENST00000542875.1 RP11-81H14.2
chr12_-_89746177 -0.64 6.31 6.85E-02 chr12:89746177-89746298 - TSS,S ENST00000308385.6/ENST00000548755.1 DUSP6 dual specificity
phosphatase 6
chr13_-_110438835 -0.78 6.57 9.06E-02 chr13:110438835-110439007 - TSS,S ENST00000375856.3 IRS2 insulin receptor substrate 2
chr14_+_22918582 1.36 3.80 9.06E-02 chr14:22918582-22918654 + CDS_or_noncoding_last_intron,AS ENST00000514473.2 AE000661.37
chr14_+_22918694 1.19 5.64 7.05E-02 chr14:22918694-22918837 + CDS_or_noncoding_last_intron,AS ENST00000514473.2 AE000661.37
chr14_+_22918909 1.54 0.25 9.06E-02 chr14:22918909-22918913 + CDS_or_noncoding_last_intron,AS ENST00000514473.2 AE000661.37
chr14_+_22925528 0.99 4.84 6.62E-02 chr14:22925528-22925713 + CDS_or_noncoding_first_exon,S ENST00000390475.1 TRDJ2 T cell receptor delta
joining 2
chr14_+_60716312 -1.90 2.92 3.66E-02 chr14:60716312-60716356 + TSSregion500,S ENST00000395076.4/ENST00000325658.3/ PPM1A protein phosphatase,
Mg2+/Mn2+ dependent,
1414
Persson et al.
ENST00000528241.2 1A
chr14_+_75745753 -1.30 2.24 8.92E-02 chr14:75745753-75745763 + TSSregion500,S ENST00000556324.1 FOSFBJ murine osteosarcoma viral oncogene homolog
chr14_+_75747627 -1.53 2.82 3.55E-02 chr14:75747627-75747702 + CDS_or_noncoding_last_exon,S
ENST00000303562.4/ENST00000535987.1/ENST00000555686.1/ENST00000555672.1/ENST00000555347.1
FOSFBJ murine osteosarcoma viral oncogene homolog
chr14_-_25103344 1.29 8.44 3.63E-02 chr14:25103344-25103520 - TSS,S
ENST00000415355.3/ENST00000216341.4/ENST00000382539.2/ENST00000382542.1/ENST00000382540.1/ENST00000532263.1/ENST00000554242.1/ENST00000530830.1/ENST00000526004.1
GZMB
granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
chr14_-_35872416 -1.65 2.93 3.11E-03 chr14:35872416-35872424 - TSSregion500,S ENST00000555371.1/ENST00000556664.1 NFKBIA
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
chr14_-_35873848 -1.13 7.18 2.15E-03 chr14:35873848-35873985 - TSS,S
ENST00000216797.5/ENST00000554001.1/ENST00000557140.1/ENST00000553342.1/ENST00000557100.1/ENST00000557459.1/ENST00000555629.1
NFKBIA
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
chr15_+_31664212 -1.55 1.73 4.70E-02 chr15:31664212-31664310 + 5UTR_last_exon,S ENST00000558844.1 KLF13 Kruppel-like factor 13
chr15_+_43478001 -1.39 0.75 9.06E-02 chr15:43478001-43478164 + TSS,S ENST00000444658.2 CCNDBP1 cyclin D-type binding-protein 1
chr15_+_58430571 -1.15 3.42 4.66E-02 chr15:58430571-58430584 + TSS,S ENST00000536493.1 AQP9 aquaporin 9
chr16_+_3096707 -1.46 1.70 7.01E-03 chr16:3096707-3096711 + TSSregion500,S ENST00000336577.3 MMP25 matrix metallopeptidase 25
chr16_+_57681338 1.80 1.42 9.06E-02 chr16:57681338-57681375 + 5UTR_first_intron,SENST00000544297.1/ENST00000456916.1/ENST00000388812.4
GPR56 G protein-coupled receptor 56
chr16_-_405193 1.19 3.49 3.63E-02 chr16:405193-405380 - intergenic intergenic NA NAchr17_+_34227367 1.89 0.63 7.53E-02 chr17:34227367-34227501 + intergenic intergenic NA NA
chr17_+_37865774 1.57 3.42 2.60E-02 chr17:37865774-37865959 + CDS_or_noncoding_first_intron,S ENST00000445658.2 ERBB2
v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
chr17_+_72462527 1.20 4.96 6.21E-03 chr17:72462527-72462548 + TSSregion500,S ENST00000361933.2/ CD300A CD300a molecule
1515
Persson et al.
ENST00000360141.3/ENST00000392625.3/ENST00000310828.5
chr17_-_68165434 -1.68 0.12 7.05E-02 chr17:68165434-68165544 - TSSregion500,AS ENST00000243457.2 KCNJ2potassium inwardly-rectifying channel, subfamily J, member 2
chr17_-_73843917 -0.81 2.87 5.20E-02 chr17:73843917-73844003 - CDS_or_noncoding_inner_exon,S
ENST00000254806.3/ENST00000344296.4/ENST00000416574.2
WBP2 WW domain binding protein 2
chr19_+_12902551 -1.11 3.38 4.99E-02 chr19:12902551-12902614 + TSSregion500,S ENST00000302754.4 JUNB jun B proto-oncogene
chr19_+_39897475 -0.73 10.54 3.11E-03 chr19:39897475-39897519 + TSS,S ENST00000248673.3 ZFP36zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39898433 -1.15 2.26 2.77E-02 chr19:39898433-39898475 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36
zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39898497 -1.07 4.74 6.99E-03 chr19:39898497-39898620 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36
zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39898703 -0.95 4.73 7.05E-02 chr19:39898703-39898792 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36
zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39898819 -1.69 1.94 1.11E-02 chr19:39898819-39898828 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36
zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_45971244 -1.62 5.61 1.22E-03 chr19:45971244-45971289 + TSS,S
ENST00000417353.1/ENST00000455928.2/ENST00000353609.2/ENST00000443841.1
FOSBFBJ murine osteosarcoma viral oncogene homolog B
chr19_+_45971668 -1.89 0.81 9.06E-02 chr19:45971668-45971768 + TSSregion500,S
ENST00000417353.1/ENST00000455928.2/ENST00000353609.2/ENST00000443841.1
FOSBFBJ murine osteosarcoma viral oncogene homolog B
chr19_+_47823182 -2.40 -0.66 9.06E-02 chr19:47823182-47823190 + CDS_or_noncoding_last_exon,S ENST00000355085.2 C5AR1
complement component 5a receptor 1
chr19_+_51890311 1.61 2.50 3.93E-02 chr19:51890311-51890438 + CDS_or_noncoding_inner_exon,AS ENST00000221973.2 LIM2 lens intrinsic membrane
protein 2, 19kDachr19_+_7437754 -1.83 -0.14 4.38E-02 chr19:7437754-7437912 + intergenic intergenic NA NA
chr19_-_3984160 -1.42 3.83 7.01E-03 chr19:3984160-3984353 - CDS_or_noncoding_inner_exon,S
ENST00000543343.1/ENST00000309311.5 EEF2 eukaryotic translation
elongation factor 2
chr1_+_118165763 -2.13 0.10 8.19E-02 chr1:118165763-118165766 + CDS_or_noncoding_last_exon,S ENST00000369448.3 FAM46C family with sequence
similarity 46, member C
chr1_+_145440653 -1.05 3.67 7.05E-02 chr1:145440653-145440758 + TSSregion500,S ENST00000486597.1 TXNIP cDNA FLJ61424, highly similar to Homo
1616
Persson et al.
sapiens thioredoxin interacting protein (TXNIP), mRNA
chr1_+_209849199 -1.50 3.39 7.30E-02 chr1:209849199-209849309 + CDS_or_noncoding_last_exon,S ENST00000367029.4 G0S2 G0/G1switch 2
chr1_+_45265972 -0.80 6.24 1.80E-02 chr1:45265972-45266161 + TSS,S ENST00000543983.1/ENST00000465443.1 PLK3 polo-like kinase 3
chr1_+_51702289 -1.29 4.09 3.63E-02 chr1:51702289-51702327 + TSSregion500,S ENST00000242719.3/ENST00000494873.1 RNF11 ring finger protein 11
chr1_+_55273150 1.94 1.62 4.89E-02 chr1:55273150-55273328 + CDS_or_noncoding_inner_exon,S
ENST00000358193.3/ENST00000371273.3 C1ORF177 NA
chr1_-_156786472 1.13 6.17 7.76E-03 chr1:156786472-156786650 - TSS,SENST00000368198.3/ENST00000392306.2/ENST00000495306.1
SH2D2A SH2 domain containing 2A
chr1_-_162381782 1.24 6.16 4.70E-02 chr1:162381782-162381979 - TSS,SENST00000367929.2/ENST00000359567.3/ENST00000493550.1
SH2D1B SH2 domain containing 1B
chr1_-_167409896 1.96 -0.15 7.05E-02 chr1:167409896-167410008 - CDS_or_noncoding_inner_exon,S
ENST00000362089.5/ENST00000392122.3/ENST00000483825.1
CD247 CD247 molecule
chr20_+_30193050 -3.41 1.67 2.15E-03 chr20:30193050-30193211 + TSS,S ENST00000376112.3/ENST00000376105.3 ID1
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
chr20_+_37707484 1.97 0.54 7.69E-02 chr20:37707484-37707551 + intergenic intergenic NA NA
chr20_-_47361555 -1.69 -0.08 9.15E-02 chr20:47361555-47361687 - CDS_or_noncoding_inner_exon,S
ENST00000371941.3/ENST00000396220.1 PREX1
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
chr20_-_4804243 -0.64 3.98 6.00E-02 chr20:4804243-4804288 - TSSregion500,S ENST00000379400.3/ENST00000474232.1 RASSF2
Ras association (RalGDS/AF-6) domain family member 2
chr21_+_40177842 -0.61 5.83 6.62E-02 chr21:40177842-40177909 + TSS,S ENST00000432278.1 ETS2v-ets erythroblastosis virus E26 oncogene homolog 2 (avian)
chr22_-_50523815 1.19 3.83 3.29E-02 chr22:50523815-50524009 - TSS,SENST00000538737.1/ENST00000431262.2/ENST00000535444.1
MLC1megalencephalic leukoencephalopathy with subcortical cysts 1
chr2_+_120687240 0.84 6.11 4.38E-02 chr2:120687240-120687438 + TSS,S ENST00000544261.1 PTPN4
protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
chr2_+_143718820 2.10 -0.17 8.58E-02 chr2:143718820-143718872 + CDS_or_noncoding_inner_intron,S
ENST00000264170.4/ENST00000375773.2/ENST00000409512.1
KYNU kynureninase
chr2_+_158290873 -2.25 -0.89 6.62E-02 chr2:158290873-158290905 + 5UTR_inner_exon,AS
ENST00000540637.1/ENST00000418920.1 CYTIP cytohesin 1 interacting
proteinchr2_+_237897693 -3.39 1.23 7.24E-03 chr2:237897693-237897808 + intergenic intergenic NA NA
1717
Persson et al.
chr2_+_7865810 1.02 4.89 7.01E-03 chr2:7865810-7865995 + TSS,S ENST00000417930.1 AC092580.4
chr2_+_98329970 2.40 -0.58 8.29E-02 chr2:98329970-98329976 + TSSregion500,S ENST00000264972.5/ENST00000483781.1 ZAP70
zeta-chain (TCR) associated protein kinase 70kDa
chr2_-_235404769 1.47 1.14 7.05E-02 chr2:235404769-235404842 - CDS_or_noncoding_first_exon,S
ENST00000390645.2/ENST00000339728.3 ARL4C ADP-ribosylation factor-
like 4C
chr2_-_238600408 -1.02 1.64 9.06E-02 chr2:238600408-238600593 - TSSregion500,AS
ENST00000391999.4/ENST00000289175.6/ENST00000244815.5/ENST00000420665.1/ENST00000392000.4
LRRFIP1leucine rich repeat (in FLII) interacting protein 1
chr2_-_37898705 -0.56 7.00 7.05E-02 chr2:37898705-37898841 - TSSregion500,S ENST00000295324.3 CDC42EP3CDC42 effector protein (Rho GTPase binding) 3
chr2_-_47387476 2.61 0.28 3.93E-02 chr2:47387476-47387641 - CDS_or_noncoding_last_exon,S ENST00000460218.1 CALM2
calmodulin 2 (phosphorylase kinase, delta)
chr4_+_40201115 -1.70 -0.33 9.06E-02 chr4:40201115-40201251 + 5UTR_first_intron,S
ENST00000505618.1/ENST00000507851.1/ENST00000503941.1/ENST00000381799.4
RHOH ras homolog family member H
chr4_+_74853663 2.44 0.74 7.69E-02 chr4:74853663-74853715 + CDS_or_noncoding_first_exon,AS ENST00000296028.3 PPBP
pro-platelet basic protein (chemokine (C-X-C motif) ligand 7)
chr4_-_154605156 -1.60 1.12 3.63E-02 chr4:154605156-154605348 - intergenic intergenic NA NAchr4_-_48116463 1.43 3.67 4.22E-02 chr4:48116463-48116595 - TSS,S ENST00000506073.1 TXK TXK tyrosine kinase
chr5_+_137801158 -2.20 5.91 6.99E-03 chr5:137801158-137801179 + TSS,SENST00000411801.2/ENST00000535792.1/ENST00000239938.4
EGR1 early growth response 1
chr5_+_137801300 -2.89 1.63 2.15E-03 chr5:137801300-137801415 + TSSregion500,SENST00000411801.2/ENST00000535792.1/ENST00000239938.4
EGR1 early growth response 1
chr5_+_137802453 -2.98 1.17 3.11E-03 chr5:137802453-137802597 + CDS_or_noncoding_inner_exon,S
ENST00000411801.2/ENST00000535792.1 EGR1 early growth response
1
chr5_+_177027101 -0.69 3.78 8.44E-02 chr5:177027101-177027237 + TSS,S
ENST00000505433.1/ENST00000510761.1/ENST00000505468.1/ENST00000502420.1
B4GALT7xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7
chr6_+_114178493 -0.57 8.66 6.53E-02 chr6:114178493-114178688 + TSS,S ENST00000368635.4 MARCKSmyristoylated alanine-rich protein kinase C substrate
chr6_+_114178781 -0.83 3.51 6.90E-02 chr6:114178781-114178932 + TSSregion500,S ENST00000368635.4 MARCKSmyristoylated alanine-rich protein kinase C substrate
chr6_+_14117860 -1.08 5.19 4.99E-02 chr6:14117860-14118039 + TSS,S ENST00000379153.3 CD83 CD83 molecule
chr6_+_154566797 -2.42 0.45 3.93E-02 chr6:154566797-154566904 + CDS_or_noncoding_last_intron,S ENST00000337049.4 OPRM1 opioid receptor, mu 1
1818
Persson et al.
chr6_+_89790868 -2.22 1.36 1.80E-02 chr6:89790868-89790877 + 5UTR_last_intron,S ENST00000369472.1 PNRC1 proline-rich nuclear receptor coactivator 1
chr6_-_31560676 0.80 5.26 3.63E-02 chr6:31560676-31560808 - TSS,S
ENST00000340027.5/ENST00000376073.4/ENST00000376072.3/ENST00000491161.1
NCR3 natural cytotoxicity triggering receptor 3
chr7_+_100271340 -0.46 6.82 7.69E-02 chr7:100271340-100271519 + TSS,S
ENST00000436220.1/ENST00000424361.1/ENST00000419828.1/ENST00000427895.1
GNB2
guanine nucleotide binding protein (G protein), beta polypeptide 2
chr7_+_38256540 1.19 3.87 4.70E-02 chr7:38256540-38256718 + CDS_or_noncoding_inner_exon,S
ENST00000009041.7/ENST00000544203.1/ENST00000396013.1/ENST00000440144.1/ENST00000453225.1/ENST00000429075.1/ENST00000471550.1
STARD3NL STARD3 N-terminal like
chr7_-_36763798 0.98 4.42 8.44E-02 chr7:36763798-36763855 - TSSregion500,S
ENST00000535891.1/ENST00000258749.5/ENST00000431169.1/ENST00000544647.1/ENST00000435386.1/ENST00000414637.1
AOAH acyloxyacyl hydrolase (neutrophil)
chr7_-_38344997 1.83 1.33 8.86E-02 chr7:38344997-38345194 - intergenic intergenic NA NA
chr8_+_23386670 -1.40 3.46 6.62E-02 chr8:23386670-23386682 + TSSregion500,SENST00000518881.1/ENST00000519192.1/ENST00000520654.1
SLC25A37
solute carrier family 25 (mitochondrial iron transporter), member 37
chr8_+_8777573 1.01 2.67 4.66E-02 chr8:8777573-8777660 + intergenic intergenic NA NA
chr8_-_22550924 -1.22 3.57 3.29E-02 chr8:22550924-22551044 - TSSregion500,S ENST00000317216.2/ENST00000519492.1 EGR3 early growth response
3
chr9_+_137293469 -1.22 1.58 9.06E-02 chr9:137293469-137293599 + CDS_or_noncoding_inner_exon,S
ENST00000481739.1/ENST00000356384.4 RXRA retinoid X receptor,
alpha
chr9_+_4662265 -0.91 2.60 9.06E-02 chr9:4662265-4662424 + TSS,S ENST00000381883.2/ENST00000537542.1 PPAPDC2
phosphatidic acid phosphatase type 2 domain containing 2
chr9_-_34126465 -1.73 3.28 8.44E-02 chr9:34126465-34126514 - TSSregion500,S ENST00000361264.3 DCAF12 DDB1 and CUL4 associated factor 12
chr9_-_74979780 -1.35 2.74 4.38E-02 chr9:74979780-74979938 - TSS,S ENST00000487330.1 ZFAND5 zinc finger, AN1-type domain 5
chr9_-_94173418 -1.43 2.05 8.44E-02 chr9:94173418-94173492 - 5UTR_first_intron,S ENST00000375724.1/ENST00000297689.2 NFIL3 nuclear factor,
interleukin 3 regulated
chrM_+_811 -1.42 4.54 3.31E-02 chrM:811-814 + intergenic intergenic NA NAchrX_-_106957871 -1.35 2.29 4.99E-02 chrX:106957871-106957983 - CDS_or_noncoding
_last_exon,SENST00000372390.4/ENST00000372397.2/ENST00000315660.4/
TSC22D3 TSC22 domain family, member 3
1919
Persson et al.
ENST00000372383.4/ENST00000372384.2/ENST00000394928.2/ENST00000372382.4/ENST00000506081.1/ENST00000514426.1/ENST00000486554.1
chrX_-_106960136 -0.68 9.24 3.31E-02 chrX:106960136-106960300 - TSS,S ENST00000503515.1 TSC22D3 TSC22 domain family, member 3
2020
230
Persson et al.
Table E4. Differentially expressed tag clusters for SA vs CTRL.
TC logFC logCPM Adj. P Position Strand Annotation Transcript iD Gene symbol Description
chr10_+_114206949 0.54 5.88 7.91E-02 chr10:114206949-114207088 + TSS,S
ENST00000432306.1/ENST00000393077.2/ENST00000496445.1/ENST00000489142.1/ENST00000494728.1
VTI1A
vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
chr10_+_12615851 1.68 -0.07 4.08E-02 chr10:12615851-12615975 +CDS_or_noncoding_inner_intron,S
ENST00000378847.3/ENST00000378845.1 CAMK1D
calcium/calmodulin-dependent protein kinase ID
chr10_+_135044125 -1.43 0.67 3.25E-02 chr10:135044125-135044239 + CDS_or_noncoding_first_exon,S ENST00000304477.2 UTF1
undifferentiated embryonic cell transcription factor 1
chr10_+_20105533 0.76 3.80 3.93E-02 chr10:20105533-20105573 + TSSregion500,S
ENST00000377242.3/ENST00000377238.1/ENST00000377252.3/ENST00000536022.1
PLXDC2 plexin domain containing 2
chr10_+_5136559 1.09 4.27 4.54E-02 chr10:5136559-5136636 + TSSregion500,S ENST00000480697.1 AKR1C3
aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)
chr10_+_87802049 -0.62 4.03 9.08E-02 chr10:87802049-87802059 +CDS_or_noncoding_inner_intron,AS
ENST00000327946.7/ENST00000464741.1 GRID1 glutamate receptor,
ionotropic, delta 1
chr10_+_89705229 -0.56 9.31 7.86E-02 chr10:89705229-89705246 + TSSregion500,S ENST00000395256.2 RP11-380G5.3
chr10_-_126849088 0.95 1.91 5.69E-02 chr10:126849088-126849149 - TSSregion500,SENST00000337195.5/ENST00000494626.2/ENST00000460976.1
CTBP2 C-terminal binding protein 2
chr10_-_15902420 0.63 4.58 4.68E-02 chr10:15902420-15902532 - TSS,S ENST00000277632.3/ENST00000477891.1 FAM188A
family with sequence similarity 188, member A
chr10_-_31288304 0.72 4.22 4.54E-02 chr10:31288304-31288498 - TSS,S ENST00000538351.1 ZNF438 zinc finger protein 438
chr10_-_64576013 -1.28 2.27 3.66E-02 chr10:64576013-64576175 - TSS,S ENST00000242480.3/ENST00000411732.1 EGR2 early growth response
2
chr11_+_108094041 0.56 4.65 6.96E-02 chr11:108094041-108094204 + TSSregion500,S ENST00000530958.1/ENST00000526567.1 ATM ataxia telangiectasia
mutated
chr11_+_13690142 0.57 5.98 1.92E-02 chr11:13690142-13690328 + TSS,SENST00000354817.3/ENST00000532701.1/ENST00000355107.6
FAR1 fatty acyl CoA reductase 1
chr11_+_44939434 1.07 3.11 3.22E-02 chr11:44939434-44939570 + TSSregion500,S ENST00000520245.1 TSPAN18 tetraspanin 18
chr11_+_60237271 -2.06 -0.63 6.21E-02 chr11:60237271-60237456 + 3UTR_last_exon,S
ENST00000345732.4/ENST00000532073.1/ENST00000534668.1/
MS4A1membrane-spanning 4-domains, subfamily A, member 1
2121
231232
Persson et al.
ENST00000389939.2
chr11_+_65190259 0.98 9.47 7.82E-03 chr11:65190259-65190323 + TSS,S ENST00000501122.2 NEAT1nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65190530 1.05 4.15 2.07E-02 chr11:65190530-65190557 + TSSregion500,S ENST00000499732.1/ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65195912 2.16 -0.12 9.10E-02 chr11:65195912-65195956 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65198184 1.87 1.14 5.66E-02 chr11:65198184-65198284 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65205696 1.75 0.60 5.57E-02 chr11:65205696-65205744 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65209472 1.79 3.19 2.48E-02 chr11:65209472-65209618 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65269313 -1.55 3.74 6.21E-02 chr11:65269313-65269322 + TSSregion500,S ENST00000508832.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65269367 -1.89 4.63 3.74E-02 chr11:65269367-65269381 + TSSregion500,S ENST00000508832.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65271341 -2.71 2.31 8.68E-02 chr11:65271341-65271343 + CDS_or_noncoding_first_exon,S ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65271566 -1.03 4.28 9.10E-02 chr11:65271566-65271587 + CDS_or_noncoding_first_exon,S ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65271869 -1.92 0.51 8.68E-02 chr11:65271869-65271876 + CDS_or_noncoding_first_exon,S ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65272097 -1.59 2.70 6.76E-02 chr11:65272097-65272112 + CDS_or_noncoding_first_exon,S ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_809918 -0.54 12.23 7.23E-02 chr11:809918-810018 + TSS,SENST00000530797.1/ENST00000532004.1/ENST00000524867.1
RPLP2 ribosomal protein, large, P2
chr11_+_8704273 -0.45 7.55 2.72E-02 chr11:8704273-8704391 + TSS,SENST00000531978.1/ENST00000524496.1/ENST00000534599.1/
RPL27A ribosomal protein L27a
2222
Persson et al.
ENST00000532359.1/ENST00000530022.1/ENST00000529227.1/ENST00000530585.1
chr11_-_10315600 0.74 5.95 5.33E-03 chr11:10315600-10315799 - TSS,S ENST00000256190.8 SBF2 SET binding factor 2
chr11_-_46142520 0.62 4.70 1.77E-02 chr11:46142520-46142695 - TSS,S
ENST00000418153.2/ENST00000532883.1/ENST00000529734.1/ENST00000530312.1
PHF21A PHD finger protein 21A
chr11_-_85522024 0.77 4.48 9.88E-02 chr11:85522024-85522224 - TSS,S
ENST00000389960.4/ENST00000316356.4/ENST00000527523.1/ENST00000524830.1
SYTL2 synaptotagmin-like 2
chr11_-_85779972 0.59 8.60 9.14E-03 chr11:85779972-85780172 - TSS,S
ENST00000532317.1/ENST00000526033.1/ENST00000447890.2/ENST00000531558.1/ENST00000532041.1/ENST00000528256.1
PICALMphosphatidylinositol binding clathrin assembly protein
chr12_+_1018011 -1.92 1.59 8.60E-02 chr12:1018011-1018098 + CDS_or_noncoding_last_exon,S ENST00000540885.1 WNK1 WNK lysine deficient
protein kinase 1
chr12_+_104895602 2.37 0.19 5.90E-02 chr12:104895602-104895791 + CDS_or_noncoding_first_intron,S
ENST00000549260.1/ENST00000303694.5 CHST11
carbohydrate (chondroitin 4) sulfotransferase 11
chr12_+_105064229 1.19 2.85 9.16E-02 chr12:105064229-105064419 + CDS_or_noncoding_last_intron,S
ENST00000549260.1/ENST00000303694.5/ENST00000549016.1
CHST11carbohydrate (chondroitin 4) sulfotransferase 11
chr12_+_25205629 0.51 7.49 6.10E-02 chr12:25205629-25205692 + TSS,SENST00000554942.1/ENST00000547044.1/ENST00000549437.1
LRMP lymphoid-restricted membrane protein
chr12_+_51324643 -1.67 -0.42 9.82E-02 chr12:51324643-51324666 + 3UTR_last_exon,S
ENST00000548553.1/ENST00000332160.4 METTL7A methyltransferase like
7Achr12_+_5632862 -1.19 1.41 8.73E-02 chr12:5632862-5632873 + intergenic intergenic NA NA
chr12_+_9795402 1.20 3.00 1.77E-02 chr12:9795402-9795522 + CDS_or_noncoding_first_exon,S ENST00000426641.2 GOT2P3
glutamic-oxaloacetic transaminase 2 pseudogene 3
chr12_-_11324071 0.75 5.00 5.08E-02 chr12:11324071-11324256 - TSS,S
ENST00000536668.1/ENST00000535024.1/ENST00000541977.1/ENST00000381852.4/ENST00000546265.1
PRR4 proline rich 4 (lacrimal)
chr12_-_26986078 0.67 5.11 3.66E-02 chr12:26986078-26986222 - TSS,S ENST00000381340.3 ITPR2inositol 1,4,5-trisphosphate receptor, type 2
chr12_-_57039668 -0.39 8.08 1.77E-02 chr12:57039668-57039866 - TSS,S ENST00000262030.3/ENST00000552919.1/ ATP5B ATP synthase, H+
transporting,
2323
Persson et al.
ENST00000552104.1/ENST00000551020.1/ENST00000552959.1/ENST00000553007.1/ENST00000547808.1/ENST00000548647.1
mitochondrial F1 complex, beta polypeptide
chr12_-_68845284 1.06 4.09 7.46E-02 chr12:68845284-68845483 - TSS,S ENST00000542875.1 RP11-81H14.2
chr12_-_90102557 0.61 4.95 4.07E-02 chr12:90102557-90102575 - TSSregion500,S ENST00000428670.3 ATP2B1ATPase, Ca++ transporting, plasma membrane 1
chr13_+_23969117 -0.99 4.21 8.11E-03 chr13:23969117-23969132 +CDS_or_noncoding_first_intron,AS
ENST00000382292.3 SACSspastic ataxia of Charlevoix-Saguenay (sacsin)
chr13_+_32605751 0.73 6.27 2.72E-02 chr13:32605751-32605928 + TSSregion500,S
ENST00000380235.4/ENST00000380257.4/ENST00000380250.3/ENST00000463566.1
FRY furry homolog (Drosophila)
chr13_+_42031563 -0.59 5.64 4.54E-02 chr13:42031563-42031753 + TSS,S ENST00000379359.3 C13ORF15 NA
chr13_-_46728936 -1.41 -0.03 9.88E-02 chr13:46728936-46729040 -CDS_or_noncoding_inner_exon,S
ENST00000323076.2/ENST00000398576.1/ENST00000416500.1
LCP1 lymphocyte cytosolic protein 1 (L-plastin)
chr13_-_46948851 0.94 4.72 6.21E-02 chr13:46948851-46949006 - 5UTR_first_intron,S
ENST00000378787.3/ENST00000534925.1/ENST00000417405.1
KIAA0226L KIAA0226-like
chr14_+_64228282 0.99 4.50 2.48E-02 chr14:64228282-64228403 + TSSregion500,S ENST00000554348.1 RP11-804M7.2
chr14_+_70238299 -1.90 0.50 8.30E-02 chr14:70238299-70238355 + CDS_or_noncoding_last_exon,S
ENST00000554465.1/ENST00000556184.1/ENST00000556587.1/ENST00000555547.1/ENST00000554929.1
SRSF5 serine/arginine-rich splicing factor 5
chr14_+_71374383 0.59 5.77 9.30E-02 chr14:71374383-71374451 + TSS,S ENST00000554292.1 PCNX pecanex homolog (Drosophila)
chr14_+_71787776 0.81 4.90 8.69E-03 chr14:71787776-71787875 + TSSregion500,S ENST00000557151.1 SIPA1L1signal-induced proliferation-associated 1 like 1
chr14_-_107259747 -1.17 4.67 9.55E-02 chr14:107259747-107259848 - TSSregion500,S ENST00000450948.1 IGHV5-78immunoglobulin heavy variable 5-78 (pseudogene)
chr14_-_23771335 -1.80 -0.01 3.25E-02 chr14:23771335-23771340 - 5UTR_inner_intron,AS ENST00000553824.1 BCL2L2 BCL2-like 2
chr14_-_92852982 1.27 0.91 5.96E-02 chr14:92852982-92853172 - 5UTR_inner_intron,AS ENST00000318079.5 SLC24A4
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr14_-_94856827 0.90 4.34 5.49E-02 chr14:94856827-94856836 - TSSregion500,SENST00000440909.1/ENST00000448921.1/ENST00000437397.1/
SERPINA1serpin peptidase inhibitor, clade A (alpha-1 antiproteinase,
2424
Persson et al.
ENST00000355814.4/ENST00000393088.4/ENST00000404814.4/ENST00000449399.3/ENST00000557492.1/ENST00000556955.1/ENST00000553327.1/ENST00000557118.1/ENST00000555289.1/ENST00000557361.1/ENST00000557093.1
antitrypsin), member 1
chr14_-_99737975 -0.67 3.04 8.64E-02 chr14:99737975-99738161 - TSSregion500,SENST00000357195.3/ENST00000345514.2/ENST00000443726.2
BCL11B B-cell CLL/lymphoma 11B (zinc finger protein)
chr15_+_22550633 1.94 2.09 6.40E-02 chr15:22550633-22550814 + intergenic intergenic NA NA
chr15_+_50646398 -0.90 1.47 7.39E-02 chr15:50646398-50646470 + 5UTR_first_intron,AS
ENST00000380877.3/ENST00000220429.8/ENST00000543881.1/ENST00000429662.2/ENST00000396464.3/ENST00000359031.4/ENST00000560825.1/ENST00000558970.1
GABPB1GA binding protein transcription factor, beta subunit 1
chr15_+_55611346 0.98 1.97 7.34E-02 chr15:55611346-55611380 + TSSregion500,S ENST00000164305.4/ENST00000539642.1 PIGB
phosphatidylinositol glycan anchor biosynthesis, class B
chr15_+_78462578 -1.01 2.11 3.25E-02 chr15:78462578-78462718 + CDS_or_noncoding_last_exon,S ENST00000558535.1 IDH3A
isocitrate dehydrogenase 3 (NAD+) alpha
chr15_+_86087291 0.78 5.07 7.46E-02 chr15:86087291-86087325 + 5UTR_inner_intron,S ENST00000426424.2 AKAP13 A kinase (PRKA)
anchor protein 13
chr15_+_86266304 1.40 0.15 9.10E-02 chr15:86266304-86266465 +CDS_or_noncoding_inner_exon,S
ENST00000426424.2/ENST00000394518.2/ENST00000361243.2/ENST00000458540.1/ENST00000394516.1/ENST00000394510.2/ENST00000560676.1/ENST00000560579.1/ENST00000558644.1
AKAP13 A kinase (PRKA) anchor protein 13
chr15_+_94774580 0.99 3.05 2.48E-02 chr15:94774580-94774633 + TSSregion500,SENST00000543482.1/ENST00000456504.1/ENST00000556363.1
MCTP2 multiple C2 domains, transmembrane 2
chr15_+_94774756 0.51 6.38 8.68E-02 chr15:94774756-94774839 + TSS,S ENST00000543482.1/ENST00000556363.1 MCTP2 multiple C2 domains,
transmembrane 2
2525
Persson et al.
chr15_+_98503887 -0.71 4.14 4.68E-02 chr15:98503887-98504027 + TSS,S ENST00000268042.6 ARRDC4 arrestin domain containing 4
chr15_+_99273361 1.93 -0.14 8.68E-02 chr15:99273361-99273480 +CDS_or_noncoding_inner_intron,S
ENST00000268035.6/ENST00000558762.1/ENST00000559925.1
IGF1R insulin-like growth factor 1 receptor
chr15_-_34729924 0.94 4.66 4.65E-02 chr15:34729924-34730078 - 5UTR_inner_intron,S ENST00000543376.1 GOLGA8A golgin A8 family,
member A
chr15_-_61133380 1.09 2.14 1.84E-02 chr15:61133380-61133539 - CDS_or_noncoding_first_intron,S
ENST00000335670.6/ENST00000551975.1/ENST00000557822.1/ENST00000559145.1/ENST00000561093.1
RORA RAR-related orphan receptor A
chr16_+_2014895 -0.84 3.92 2.41E-02 chr16:2014895-2015093 + TSS,S ENST00000531523.1 SNHG9small nucleolar RNA host gene 9 (non-protein coding)
chr16_+_23890834 2.80 -0.56 4.92E-02 chr16:23890834-23890850 + CDS_or_noncoding_first_intron,S ENST00000498739.1 PRKCB protein kinase C, beta
chr16_+_23914220 2.13 0.42 2.48E-02 chr16:23914220-23914337 + CDS_or_noncoding_first_intron,S ENST00000498739.1 PRKCB protein kinase C, beta
chr16_+_29817622 -0.46 4.88 5.09E-02 chr16:29817622-29817713 + TSSregion500,S ENST00000219782.5/ENST00000322945.5 MAZ
MYC-associated zinc finger protein (purine-binding transcription factor)
chr16_+_31539532 -0.95 2.80 7.03E-02 chr16:31539532-31539539 +CDS_or_noncoding_inner_exon,S
ENST00000302312.4 AHSP alpha hemoglobin stabilizing protein
chr16_+_67876183 -0.44 4.82 5.41E-02 chr16:67876183-67876240 + TSS,S ENST00000303596.1 THAP11 THAP domain containing 11
chr16_+_69599832 0.59 5.57 8.30E-02 chr16:69599832-69599959 + TSS,S ENST00000354436.2 NFAT5nuclear factor of activated T-cells 5, tonicity-responsive
chr16_+_81610487 2.15 0.04 5.41E-02 chr16:81610487-81610590 + CDS_or_noncoding_first_intron,S
ENST00000539778.1/ENST00000537098.1 CMIP c-Maf inducing protein
chr16_+_85833176 -0.41 8.25 1.77E-02 chr16:85833176-85833356 + TSS,S ENST00000253452.2 COX4I1 cytochrome c oxidase subunit IV isoform 1
chr16_+_89627047 -0.44 9.36 5.41E-02 chr16:89627047-89627147 + TSS,S
ENST00000311528.4/ENST00000452368.2/ENST00000393099.3/ENST00000491523.1/ENST00000484610.1/ENST00000487034.1/ENST00000467736.1
RPL13 ribosomal protein L13
chr16_+_90168658 0.66 3.77 8.68E-02 chr16:90168658-90168696 + intergenic intergenic NA NA
chr16_-_2827235 -0.55 5.93 2.78E-02 chr16:2827235-2827321 - TSS,S ENST00000409906.3/ENST00000262306.7 TCEB2
transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)
2626
Persson et al.
chr16_-_68056996 -0.76 3.59 1.53E-02 chr16:68056996-68057147 - 5UTR_first_exon,S ENST00000332395.5 DDX28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
chr17_+_26794788 -0.63 8.46 5.99E-02 chr17:26794788-26794814 + TSS,S ENST00000393464.3 RPS7P1 ribosomal protein S7 pseudogene 1
chr17_+_34227367 1.74 0.49 8.90E-02 chr17:34227367-34227501 + intergenic intergenic NA NA
chr17_+_38482580 0.76 3.98 6.10E-02 chr17:38482580-38482732 + 5UTR_first_intron,S
ENST00000254066.4/ENST00000425707.2/ENST00000394089.1
RARA retinoic acid receptor, alpha
chr17_+_41150408 -0.41 6.26 9.10E-02 chr17:41150408-41150495 + TSS,S ENST00000253788.4 RPL27 ribosomal protein L27
chr17_+_47293900 1.90 -0.18 7.61E-02 chr17:47293900-47294035 +CDS_or_noncoding_inner_exon,S
ENST00000225941.1/ENST00000419580.2 ABI3 ABI family, member 3
chr17_+_72462527 0.89 4.73 7.10E-02 chr17:72462527-72462548 + TSSregion500,S
ENST00000361933.2/ENST00000360141.3/ENST00000392625.3/ENST00000310828.5
CD300A CD300a molecule
chr17_+_7789501 1.61 0.10 7.33E-02 chr17:7789501-7789570 + CDS_or_noncoding_first_intron,S ENST00000380358.4 CHD3 chromodomain helicase
DNA binding protein 3chr17_+_8316388 0.61 7.28 2.28E-02 chr17:8316388-8316578 + intergenic intergenic NA NA
chr17_-_40491329 1.34 1.09 5.58E-02 chr17:40491329-40491428 -CDS_or_noncoding_inner_exon,S
ENST00000264657.4/ENST00000389272.3/ENST00000404395.3
STAT3
signal transducer and activator of transcription 3 (acute-phase response factor)
chr17_-_44249394 1.23 1.57 8.03E-02 chr17:44249394-44249584 - TSSregion500,S ENST00000432791.1 KIAA1267 NA
chr17_-_48943666 -0.64 5.76 8.68E-02 chr17:48943666-48943746 - TSS,S ENST00000499247.2/ENST00000509385.1 TOB1 transducer of ERBB2, 1
chr17_-_5342333 -0.35 6.52 8.73E-02 chr17:5342333-5342501 - TSS,S ENST00000225698.3 C1QBP
complement component 1, q subcomponent binding protein
chr17_-_56409828 0.80 3.51 1.61E-02 chr17:56409828-56409829 - intergenic intergenic NA NA
chr17_-_7745491 -1.54 0.12 5.47E-02 chr17:7745491-7745551 - 5UTR_first_intron,AS
ENST00000448097.1/ENST00000254846.4 KDM6B lysine (K)-specific
demethylase 6B
chr18_+_2655680 0.48 8.35 9.10E-02 chr18:2655680-2655741 + TSSregion500,S ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2673977 0.91 2.43 9.55E-02 chr18:2673977-2674175 +CDS_or_noncoding_inner_exon,S
ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_32650149 2.26 -0.70 8.03E-02 chr18:32650149-32650248 + 5UTR_inner_exon,S ENST00000413393.1 MAPRE2
microtubule-associated protein, RP/EB family, member 2
chr18_+_3594053 0.59 3.75 6.43E-02 chr18:3594053-3594120 + TSS,S ENST00000317114.1 AP002478.1 NAchr19_+_12848278 -0.49 5.64 2.48E-02 chr19:12848278-12848408 + TSS,S ENST00000357332.3 ASNA1 arsA arsenite
2727
Persson et al.
transporter, ATP-binding, homolog 1 (bacterial)
chr19_+_13208010 -1.54 -0.62 9.65E-02 chr19:13208010-13208018 + 3UTR_last_exon,S
ENST00000397661.1/ENST00000360105.3/ENST00000358552.3
NFIXnuclear factor I/X (CCAAT-binding transcription factor)
chr19_+_16254473 0.53 7.12 2.48E-02 chr19:16254473-16254655 + TSS,S ENST00000535834.1 HSH2D hematopoietic SH2 domain containing
chr19_+_16263815 1.68 1.01 1.48E-02 chr19:16263815-16263949 +CDS_or_noncoding_inner_exon,S
ENST00000253680.6/ENST00000397372.4/ENST00000535834.1
HSH2D hematopoietic SH2 domain containing
chr19_+_1905326 -0.43 4.75 6.98E-02 chr19:1905326-1905429 + TSS,S
ENST00000452128.1/ENST00000316097.7/ENST00000414057.1/ENST00000409472.1/ENST00000329478.1/ENST00000460767.1/ENST00000489554.1
SCAMP4 secretory carrier membrane protein 4
chr19_+_3094285 -1.10 1.42 4.93E-02 chr19:3094285-3094411 + TSS,S ENST00000078429.3 GNA11
guanine nucleotide binding protein (G protein), alpha 11 (Gq class)
chr19_+_41812977 -1.32 1.38 8.68E-02 chr19:41812977-41813005 + 3UTR_last_exon,S
ENST00000352456.2/ENST00000392006.2/ENST00000378215.3
HNRNPUL1heterogeneous nuclear ribonucleoprotein U-like 1
chr19_+_42300425 0.47 7.75 8.68E-02 chr19:42300425-42300581 + TSS,S
ENST00000389667.3/ENST00000221999.4/ENST00000415495.1/ENST00000344550.4
CEACAM3carcinoembryonic antigen-related cell adhesion molecule 3
chr19_+_45542746 1.06 2.70 4.65E-02 chr19:45542746-45542832 + TSS,S ENST00000544944.1 CLASRPCLK4-associating serine/arginine rich protein
chr19_+_45971244 -1.49 5.70 4.52E-03 chr19:45971244-45971289 + TSS,S
ENST00000417353.1/ENST00000455928.2/ENST00000353609.2/ENST00000443841.1
FOSBFBJ murine osteosarcoma viral oncogene homolog B
chr19_+_49999627 -0.43 9.54 4.88E-02 chr19:49999627-49999702 + TSS,S ENST00000270625.1 RPS11 ribosomal protein S11chr19_-_12904278 -1.44 -0.23 6.76E-02 chr19:12904278-12904290 - intergenic intergenic NA NA
chr19_-_2041076 -1.38 1.28 8.64E-02 chr19:2041076-2041204 -CDS_or_noncoding_inner_exon,S
ENST00000250896.3/ENST00000309340.6/ENST00000541165.1/ENST00000545627.1
MKNK2MAP kinase interacting serine/threonine kinase 2
chr19_-_29704012 -0.47 6.14 3.39E-02 chr19:29704012-29704147 - TSS,S ENST00000304863.3 UQCRFS1ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
2828
Persson et al.
chr19_-_50498330 -0.88 5.91 8.73E-02 chr19:50498330-50498458 -CDS_or_noncoding_inner_exon,S
ENST00000316763.2/ENST00000377011.1/ENST00000424804.2
VRK3 vaccinia related kinase 3
chr1_+_113711575 -0.76 3.36 5.41E-02 chr1:113711575-113711613 + TSSregion500,S ENST00000457967.1 RP11-389O22.4
chr1_+_153963219 -0.48 10.68 9.88E-02 chr1:153963219-153963285 + TSS,S
ENST00000368567.4/ENST00000392558.4/ENST00000493224.1/ENST00000477151.1
RPS27 ribosomal protein S27
chr1_+_153968064 -0.43 6.59 9.08E-02 chr1:153968064-153968083 + TSSregion500,S ENST00000431295.1 RP11-422P24.9
chr1_+_167737047 1.72 -0.16 9.10E-02 chr1:167737047-167737075 + CDS_or_noncoding_first_intron,S
ENST00000367853.3/ENST00000474729.1 MPZL1 myelin protein zero-like
1
chr1_+_174188243 1.18 2.51 6.46E-02 chr1:174188243-174188403 + TSS,S ENST00000367692.3 RABGAP1L RAB GTPase activating protein 1-like
chr1_+_174389237 2.34 0.05 2.48E-02 chr1:174389237-174389359 +CDS_or_noncoding_inner_intron,S
ENST00000251507.4/ENST00000367692.3 RABGAP1L RAB GTPase activating
protein 1-like
chr1_+_193091322 1.06 1.90 4.93E-02 chr1:193091322-193091338 + TSSregion500,SENST00000367435.3/ENST00000445394.2/ENST00000482484.1
CDC73
cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
chr1_+_198620044 1.87 -0.35 7.57E-02 chr1:198620044-198620200 + CDS_or_noncoding_first_intron,S
ENST00000418674.1/ENST00000427110.2/ENST00000391970.3
PTPRCprotein tyrosine phosphatase, receptor type, C
chr1_+_202440569 1.97 4.16 9.66E-03 chr1:202440569-202440725 + 5UTR_first_intron,S
ENST00000391959.3/ENST00000367270.4 PPP1R12B protein phosphatase 1,
regulatory subunit 12Bchr1_+_228675040 -0.56 6.55 3.25E-02 chr1:228675040-228675163 + TSSregion500,S ENST00000305943.7 RNF187 ring finger protein 187
chr1_+_236030422 -1.16 1.08 8.03E-02 chr1:236030422-236030615 + TSSregion500,AS
ENST00000389794.3/ENST00000389793.2/ENST00000468626.1
LYST lysosomal trafficking regulator
chr1_+_24018267 -0.62 8.12 2.48E-02 chr1:24018267-24018316 + TSS,S ENST00000374550.3 RPL11 ribosomal protein L11
chr1_+_40854389 -0.96 2.51 2.48E-02 chr1:40854389-40854414 + CDS_or_noncoding_first_intron,S
ENST00000372718.3/ENST00000372708.1 SMAP2 small ArfGAP2
chr1_+_47845938 1.93 -0.02 4.07E-02 chr1:47845938-47845953 + intergenic intergenic NA NA
chr1_+_59762630 0.71 3.05 8.09E-02 chr1:59762630-59762796 + TSS,S
ENST00000371218.4/ENST00000303721.7/ENST00000430447.1/ENST00000495718.1
FGGYFGGY carbohydrate kinase domain containing
2929
Persson et al.
chr1_+_97187205 0.70 4.72 1.50E-02 chr1:97187205-97187402 + TSS,S
ENST00000236228.6/ENST00000543738.1/ENST00000370197.1/ENST00000370198.1/ENST00000426398.2/ENST00000394184.3/ENST00000482253.1/ENST00000476419.1/ENST00000460706.1
PTBP2 polypyrimidine tract binding protein 2
chr1_-_115053701 0.49 6.18 4.54E-02 chr1:115053701-115053873 - TSS,S ENST00000358465.2/ENST00000369543.2 TRIM33 tripartite motif
containing 33
chr1_-_155112964 -0.71 3.14 8.86E-02 chr1:155112964-155113043 - TSS,S ENST00000368400.4 DPM3dolichyl-phosphate mannosyltransferase polypeptide 3
chr1_-_167409896 2.13 0.01 1.77E-02 chr1:167409896-167410008 -CDS_or_noncoding_inner_exon,S
ENST00000362089.5/ENST00000392122.3/ENST00000483825.1
CD247 CD247 molecule
chr1_-_173446127 0.80 2.65 6.41E-02 chr1:173446127-173446327 - TSS,S ENST00000421168.2 AL645568.1 NA
chr1_-_176176231 0.61 6.26 1.02E-02 chr1:176176231-176176427 - TSS,S ENST00000367665.3/ENST00000436424.1 RFWD2
ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
chr1_-_182763979 0.96 1.97 5.58E-02 chr1:182763979-182764106 - 5UTR_first_intron,AS
ENST00000367551.3/ENST00000445965.2/ENST00000367554.3
NPL
N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)
chr1_-_234745882 -0.56 5.83 4.06E-02 chr1:234745882-234745972 - upstream1000,S ENST00000366609.3/ENST00000366610.3 IRF2BP2
interferon regulatory factor 2 binding protein 2
chr1_-_235292089 -0.53 6.59 1.68E-02 chr1:235292089-235292278 - TSS,S ENST00000366607.4 TOMM20
translocase of outer mitochondrial membrane 20 homolog (yeast)
chr1_-_27816117 2.09 -0.59 5.49E-02 chr1:27816117-27816310 - 5UTR_first_intron,S
ENST00000430629.2/ENST00000536657.1 WASF2 WAS protein family,
member 2
chr1_-_32401999 1.20 2.35 2.01E-02 chr1:32401999-32402087 - 5UTR_first_intron,S
ENST00000534796.1/ENST00000344035.5/ENST00000356536.3/ENST00000468531.1
PTP4A2protein tyrosine phosphatase type IVA, member 2
chr1_-_98386462 0.68 8.05 1.62E-03 chr1:98386462-98386637 - TSS,S
ENST00000370192.3/ENST00000423006.2/ENST00000306031.5/ENST00000460019.1
DPYD dihydropyrimidine dehydrogenase
chr20_+_30193050 -2.77 1.81 9.14E-03 chr20:30193050-30193211 + TSS,S ENST00000376112.3/ENST00000376105.3 ID1
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
chr20_+_37707484 2.14 0.62 3.74E-02 chr20:37707484-37707551 + intergenic intergenic NA NA
3030
Persson et al.
chr20_+_55052033 1.35 0.71 6.76E-02 chr20:55052033-55052146 +CDS_or_noncoding_inner_exon,S
ENST00000023939.4/ENST00000395881.3/ENST00000357348.5/ENST00000449062.1
C20ORF43 NA
chr20_+_60962089 -0.51 9.45 9.65E-02 chr20:60962089-60962193 + TSS,S
ENST00000370592.1/ENST00000317311.5/ENST00000343986.3/ENST00000337102.6/ENST00000492356.1
RPS21 ribosomal protein S21
chr20_+_8112866 0.67 4.49 6.27E-02 chr20:8112866-8113041 + TSSregion500,S
ENST00000378641.3/ENST00000338037.6/ENST00000378637.2/ENST00000404098.2
PLCB1phospholipase C, beta 1 (phosphoinositide-specific)
chr20_-_1350022 -2.06 -0.35 4.53E-02 chr20:1350022-1350071 - 3UTR_last_exon,S ENST00000400137.4 FKBP1A FK506 binding protein
1A, 12kDa
chr20_-_20693126 0.55 5.08 4.07E-02 chr20:20693126-20693326 - TSS,SENST00000202677.6/ENST00000424490.1/ENST00000438161.1
RALGAPA2Ral GTPase activating protein, alpha subunit 2 (catalytic)
chr20_-_46376071 1.28 0.47 9.24E-02 chr20:46376071-46376265 - CDS_or_noncoding_first_intron,S ENST00000474450.1 SULF2 sulfatase 2
chr21_+_39601714 0.65 7.30 3.25E-02 chr21:39601714-39601901 + 5UTR_first_intron,S
ENST00000547341.1/ENST00000547595.1/ENST00000548700.1
KCNJ15potassium inwardly-rectifying channel, subfamily J, member 15
chr22_+_19414171 -1.11 2.77 1.48E-02 chr22:19414171-19414187 + 5UTR_first_intron,AS ENST00000541063.1 HIRA
HIR histone cell cycle regulation defective homolog A (S. cerevisiae)
chr22_+_30353172 1.78 0.21 9.88E-02 chr22:30353172-30353266 + 5UTR_first_intron,S ENST00000445401.1 MTMR3 myotubularin related
protein 3
chr22_+_44584298 -0.87 3.29 4.28E-02 chr22:44584298-44584310 + CDS_or_noncoding_first_exon,S ENST00000468564.1 PARVG parvin, gamma
chr22_-_31682123 -1.94 0.07 3.74E-02 chr22:31682123-31682203 - CDS_or_noncoding_last_intron,S
ENST00000215912.5/ENST00000416925.1/ENST00000441972.1/ENST00000487265.2/ENST00000480654.1/ENST00000493034.1
PIK3IP1phosphoinositide-3-kinase interacting protein 1
chr22_-_31688334 -0.42 7.36 8.93E-02 chr22:31688334-31688531 - TSS,S
ENST00000215912.5/ENST00000416925.1/ENST00000441972.1/ENST00000487265.2/ENST00000402249.3/ENST00000443175.1
PIK3IP1phosphoinositide-3-kinase interacting protein 1
chr22_-_38881451 -1.91 2.36 3.25E-02 chr22:38881451-38881538 - 3UTR_last_exon,S
ENST00000396821.3/ENST00000444597.1/ENST00000381633.3
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17
3131
Persson et al.
chr22_-_39715561 -0.47 7.60 5.41E-02 chr22:39715561-39715684 - TSS,S
ENST00000402527.1/ENST00000427905.1/ENST00000420536.1/ENST00000484615.1/ENST00000460589.1/ENST00000461967.1/ENST00000498462.1/ENST00000459859.1
RPL3 ribosomal protein L3
chr2_+_102353931 1.87 1.02 3.25E-02 chr2:102353931-102353966 + CDS_or_noncoding_first_intron,S ENST00000417294.1 MAP4K4
mitogen-activated protein kinase kinase kinase kinase 4
chr2_+_103034997 0.81 5.35 4.93E-02 chr2:103034997-103035149 + TSS,S ENST00000264260.2 IL18RAP interleukin 18 receptor accessory protein
chr2_+_130939729 -0.58 5.85 6.21E-02 chr2:130939729-130939893 + TSS,S ENST00000409255.1/ENST00000455239.1 MZT2B mitotic spindle
organizing protein 2Bchr2_+_136890097 -1.62 1.12 4.67E-02 chr2:136890097-136890205 + intergenic intergenic NA NA
chr2_+_139259327 0.51 4.65 7.16E-02 chr2:139259327-139259395 + TSS,S ENST00000280098.4 SPOPL speckle-type POZ protein-like
chr2_+_143828458 0.97 7.72 5.33E-03 chr2:143828458-143828623 + intergenic intergenic NA NA
chr2_+_143886870 0.54 8.23 4.57E-02 chr2:143886870-143887014 + TSS,S ENST00000295095.6/ENST00000552641.1 ARHGAP15 Rho GTPase activating
protein 15
chr2_+_144020119 1.18 3.26 1.56E-02 chr2:144020119-144020139 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
chr2_+_144076092 1.18 2.23 1.92E-02 chr2:144076092-144076290 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
chr2_+_144187570 2.06 -0.40 7.33E-02 chr2:144187570-144187769 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
chr2_+_192543694 0.95 3.15 3.93E-02 chr2:192543694-192543736 + TSS,S ENST00000435931.1 OBFC2A NAchr2_+_199716837 -0.76 4.96 5.66E-02 chr2:199716837-199716853 + intergenic intergenic NA NA
chr2_+_20646808 0.51 5.88 9.83E-02 chr2:20646808-20646871 + TSS,S ENST00000272233.4 RHOB ras homolog family member B
chr2_+_217363518 -0.55 10.32 5.99E-02 chr2:217363518-217363623 + TSS,S
ENST00000446558.1/ENST00000420712.1/ENST00000478153.1/ENST00000490649.1/ENST00000487233.1/ENST00000359681.3
RPL37A ribosomal protein L37a
chr2_+_223725685 0.45 5.58 9.10E-02 chr2:223725685-223725816 + TSS,S ENST00000535678.1 ACSL3acyl-CoA synthetase long-chain family member 3
3232
Persson et al.
chr2_+_231110481 2.78 -0.95 6.76E-02 chr2:231110481-231110613 +CDS_or_noncoding_inner_exon,S
ENST00000392044.2/ENST00000350136.5/ENST00000392045.3/ENST00000417495.2/ENST00000420434.3
SP140 SP140 nuclear body protein
chr2_+_237897693 -3.13 1.41 5.41E-02 chr2:237897693-237897808 + intergenic intergenic NA NA
chr2_+_24236107 -1.27 0.59 8.09E-02 chr2:24236107-24236181 +CDS_or_noncoding_inner_exon,S
ENST00000338315.4/ENST00000406420.3/ENST00000495018.1
MFSD2Bmajor facilitator superfamily domain containing 2B
chr2_+_43453937 -0.95 1.58 9.10E-02 chr2:43453937-43454014 + TSSregion500,AS ENST00000282388.3 ZFP36L2 zinc finger protein 36,
C3H type-like 2
chr2_+_68478597 1.09 2.08 8.68E-02 chr2:68478597-68478795 + TSSregion500,AS ENST00000409377.1 PPP3R1
protein phosphatase 3, regulatory subunit B, alpha
chr2_+_68962105 1.48 1.31 4.91E-02 chr2:68962105-68962116 + TSSregion500,S
ENST00000295381.3/ENST00000409202.3/ENST00000467265.1/ENST00000488795.1/ENST00000456116.2/ENST00000485573.1/ENST00000463061.1/ENST00000485700.1/ENST00000496266.1
ARHGAP25 Rho GTPase activating protein 25
chr2_+_69043406 1.28 1.06 9.55E-02 chr2:69043406-69043496 + TSSregion500,S ENST00000479844.1 ARHGAP25 Rho GTPase activating protein 25
chr2_+_95740631 -1.03 2.07 3.09E-02 chr2:95740631-95740768 + intergenic intergenic NA NA
chr2_+_98329970 2.42 -0.57 5.57E-02 chr2:98329970-98329976 + TSSregion500,S ENST00000264972.5/ENST00000483781.1 ZAP70
zeta-chain (TCR) associated protein kinase 70kDa
chr2_-_136893762 -1.10 2.46 9.08E-02 chr2:136893762-136893918 - intergenic intergenic NA NA
chr2_-_160472897 0.59 5.90 5.90E-02 chr2:160472897-160473078 - TSS,S
ENST00000343439.5/ENST00000355831.2/ENST00000546335.1/ENST00000541068.2/ENST00000483316.1
BAZ2Bbromodomain adjacent to zinc finger domain, 2B
chr2_-_166651105 0.66 4.58 2.72E-02 chr2:166651105-166651237 - TSS,SENST00000392701.3/ENST00000412248.1/ENST00000431484.1
GALNT3
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
chr2_-_198175391 0.46 7.03 9.65E-02 chr2:198175391-198175567 - TSS,S
ENST00000409153.1/ENST00000539527.1/ENST00000409919.1/ENST00000447713.1/ENST00000463879.1
ANKRD44 ankyrin repeat domain 44
3333
Persson et al.
chr2_-_40679155 0.75 4.53 3.25E-02 chr2:40679155-40679298 - TSS,S ENST00000406785.1 SLC8A1solute carrier family 8 (sodium/calcium exchanger), member 1
chr2_-_8464701 1.68 2.00 8.68E-02 chr2:8464701-8464864 - TSS,S ENST00000430192.1 LINC00299 long intergenic non-protein coding RNA 299
chr3_+_134316590 0.62 6.33 2.48E-02 chr3:134316590-134316736 + TSS,SENST00000467708.2/ENST00000467013.1/ENST00000472904.1
EPHB1 EPH receptor B1
chr3_+_134514064 1.53 1.61 9.92E-02 chr3:134514064-134514224 + TSS,S ENST00000482618.1/ENST00000398015.3 EPHB1 EPH receptor B1
chr3_+_134920041 -0.96 2.55 5.22E-02 chr3:134920041-134920045 +CDS_or_noncoding_inner_intron,S
ENST00000398015.3/ENST00000493838.1 EPHB1 EPH receptor B1
chr3_+_14076729 -0.90 3.41 5.90E-02 chr3:14076729-14076747 + 5UTR_first_intron,S
ENST00000528312.1/ENST00000424053.1/ENST00000429201.1/ENST00000326972.8/ENST00000529129.1
TPRXL tetra-peptide repeat homeobox-like
chr3_+_152037421 1.19 2.42 6.10E-02 chr3:152037421-152037436 + 5UTR_first_intron,S
ENST00000495875.2/ENST00000493459.1/ENST00000459747.1/ENST00000460591.1
MBNL1 muscleblind-like splicing regulator 1
chr3_+_171757337 0.65 5.62 1.17E-02 chr3:171757337-171757442 + TSS,SENST00000415807.2/ENST00000392699.1/ENST00000421757.1
FNDC3B fibronectin type III domain containing 3B
chr3_+_174094991 -0.42 8.22 7.42E-02 chr3:174094991-174095018 + TSSregion500,S ENST00000435269.1 RP11-393N4.2
chr3_+_187871940 0.88 3.10 3.74E-02 chr3:187871940-187872004 + 5UTR_first_intron,S
ENST00000430340.1/ENST00000414139.1/ENST00000448637.1/ENST00000416784.1/ENST00000454789.1
LPPLIM domain containing preferred translocation partner in lipoma
chr3_+_197677027 -0.45 7.77 2.72E-02 chr3:197677027-197677103 + TSS,S
ENST00000448864.1/ENST00000429437.1/ENST00000485439.1/ENST00000496582.1/ENST00000329092.8
RPL35A ribosomal protein L35a
chr3_+_197880100 1.45 1.29 3.93E-02 chr3:197880100-197880150 +CDS_or_noncoding_inner_exon,S
ENST00000431569.1 FAM157Afamily with sequence similarity 157, member A
3434
Persson et al.
chr3_+_24513404 -0.98 3.66 1.53E-02 chr3:24513404-24513423 + 5UTR_first_intron,AS
ENST00000396671.2/ENST00000356447.4/ENST00000416420.1/ENST00000413780.1/ENST00000415021.1/ENST00000447875.1/ENST00000453729.2/ENST00000431815.1/ENST00000447414.1/ENST00000416811.2/ENST00000428492.1/ENST00000418247.1
THRB thyroid hormone receptor, beta
chr3_+_32433154 -0.50 3.91 8.30E-02 chr3:32433154-32433197 + TSS,S ENST00000334983.5/ENST00000349718.4 CMTM7
CKLF-like MARVEL transmembrane domain containing 7
chr3_+_39448179 -0.44 8.21 7.07E-02 chr3:39448179-39448255 + TSS,S
ENST00000301821.5/ENST00000458478.1/ENST00000443003.1/ENST00000444512.1/ENST00000477325.1/ENST00000475346.1/ENST00000487876.1
RPSA ribosomal protein SA
chr3_+_40802989 -0.69 3.22 7.33E-02 chr3:40802989-40803007 + TSSregion500,S ENST00000457554.1 RP11-761N21.2
chr3_+_42641962 1.62 -0.12 7.91E-02 chr3:42641962-42641993 + TSSregion500,S
ENST00000232978.8/ENST00000429888.1/ENST00000442970.1/ENST00000445842.1/ENST00000468735.2/ENST00000460910.1/ENST00000487466.1/ENST00000459950.1/ENST00000478488.1
NKTR natural killer-tumor recognition sequence
chr3_+_51428637 -0.61 4.38 3.74E-02 chr3:51428637-51428755 + TSS,S ENST00000323686.4 RBM15B RNA binding motif protein 15B
chr3_+_63850179 1.11 1.14 6.76E-02 chr3:63850179-63850271 + TSS,S
ENST00000398590.3/ENST00000295900.6/ENST00000474513.2/ENST00000474112.1
ATXN7 ataxin 7
chr3_+_72128314 -1.48 -0.21 7.26E-02 chr3:72128314-72128352 +CDS_or_noncoding_first_intron,AS
ENST00000470712.1 RP11-398A8.3
chr3_-_119813135 0.50 6.17 6.10E-02 chr3:119813135-119813335 - TSS,S ENST00000264235.8 GSK3B glycogen synthase kinase 3 beta
chr3_-_13009094 -0.93 4.54 7.92E-02 chr3:13009094-13009256 - TSS,S ENST00000273221.4 IQSEC1 IQ motif and Sec7 domain 1
3535
Persson et al.
chr3_-_143567230 0.63 5.74 1.12E-02 chr3:143567230-143567355 - TSS,SENST00000474727.2/ENST00000474151.1/ENST00000498717.2
SLC9A9
solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9
chr3_-_151923166 0.65 3.31 4.68E-02 chr3:151923166-151923339 - intergenic intergenic NA NA
chr3_-_169482780 -0.61 3.75 9.65E-02 chr3:169482780-169482971 - TSS,S ENST00000363312.1 TERC telomerase RNA component
chr3_-_42003514 0.70 3.72 5.90E-02 chr3:42003514-42003686 - TSS,S
ENST00000453224.1/ENST00000431379.1/ENST00000414606.1/ENST00000459802.1/ENST00000460978.1
ULK4 unc-51-like kinase 4 (C. elegans)
chr3_-_47125367 0.90 2.88 4.65E-02 chr3:47125367-47125509 - TSS,S ENST00000492397.1 SETD2 SET domain containing 2
chr4_+_113218425 0.61 6.87 1.77E-02 chr4:113218425-113218601 + TSS,S
ENST00000458497.1/ENST00000309610.6/ENST00000177648.9/ENST00000504176.2/ENST00000509722.1/ENST00000505127.1/ENST00000515330.1/ENST00000515106.1/ENST00000505176.1/ENST00000502366.1/ENST00000509688.1/ENST00000426472.2/ENST00000504488.1
ALPK1 alpha-kinase 1
chr4_+_119199844 -0.91 6.12 8.69E-02 chr4:119199844-119199924 + TSS,S ENST00000500560.1 SNHG8 NAchr4_+_123012762 -1.93 -0.58 7.69E-02 chr4:123012762-123012763 + intergenic intergenic NA NA
chr4_+_152330271 1.49 1.02 3.74E-02 chr4:152330271-152330413 + TSS,SENST00000503146.1/ENST00000435205.1/ENST00000508198.1
FAM160A1family with sequence similarity 160, member A1
chr4_+_37912620 2.28 0.20 1.48E-02 chr4:37912620-37912799 + 5UTR_first_intron,S ENST00000454732.2 TBC1D1
TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
chr4_-_121737596 1.21 3.62 8.68E-02 chr4:121737596-121737768 -CDS_or_noncoding_inner_exon,S
ENST00000264808.3/ENST00000428209.2/ENST00000515109.1/ENST00000502409.1/ENST00000505484.1
PRDM5 PR domain containing 5
chr4_-_140098331 0.63 4.28 5.41E-02 chr4:140098331-140098392 - TSS,SENST00000394235.1/ENST00000511184.1/ENST00000511006.1
ELF2E74-like factor 2 (ets domain transcription factor)
3636
Persson et al.
chr4_-_38858350 0.68 5.25 4.57E-02 chr4:38858350-38858530 - TSS,S
ENST00000506146.1/ENST00000436693.2/ENST00000508254.1/ENST00000514655.1
TLR1 toll-like receptor 1
chr4_-_48116463 1.38 3.62 3.66E-02 chr4:48116463-48116595 - TSS,S ENST00000506073.1 TXK TXK tyrosine kinase
chr4_-_48908707 -0.53 4.29 5.49E-02 chr4:48908707-48908834 - TSS,S
ENST00000273860.4/ENST00000381464.2/ENST00000510159.1/ENST00000514576.1/ENST00000506226.2
OCIAD2 OCIA domain containing 2
chr4_-_85887749 0.84 4.62 7.28E-03 chr4:85887749-85887912 - TSSregion500,S
ENST00000322366.6/ENST00000295888.4/ENST00000509172.1/ENST00000502713.1
WDFY3 WD repeat and FYVE domain containing 3
chr5_+_100239472 1.06 2.32 7.35E-02 chr5:100239472-100239541 + upstream1000,AS
ENST00000231461.4/ENST00000451528.2/ENST00000523381.1
ST8SIA4ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
chr5_+_109257711 -1.89 -0.49 3.25E-02 chr5:109257711-109257856 + intergenic intergenic NA NAchr5_+_115898212 -0.80 6.25 1.28E-03 chr5:115898212-115898282 + TSS,S ENST00000478778.1 CTB-118N6.1
chr5_+_137802453 -1.99 1.43 8.68E-02 chr5:137802453-137802597 +CDS_or_noncoding_inner_exon,S
ENST00000411801.2/ENST00000535792.1 EGR1 early growth response
1
chr5_+_139487359 0.93 2.59 5.41E-02 chr5:139487359-139487434 + TSS,S ENST00000505703.1 PURA purine-rich element binding protein A
chr5_+_142149936 0.63 6.87 2.48E-02 chr5:142149936-142150116 + TSS,S ENST00000378004.3/ENST00000274498.4 ARHGAP26 Rho GTPase activating
protein 26
chr5_+_142200886 2.74 0.45 7.61E-02 chr5:142200886-142200900 + CDS_or_noncoding_first_intron,S
ENST00000378004.3/ENST00000274498.4/ENST00000378013.2
ARHGAP26 Rho GTPase activating protein 26
chr5_+_142443804 2.96 -0.78 9.88E-02 chr5:142443804-142443983 +CDS_or_noncoding_inner_intron,S
ENST00000378004.3/ENST00000274498.4/ENST00000418668.3/ENST00000443674.1/ENST00000418236.1
ARHGAP26 Rho GTPase activating protein 26
chr5_+_145838658 1.19 1.56 9.30E-02 chr5:145838658-145838847 + TSS,S ENST00000513298.1 TCERG1 transcription elongation regulator 1
chr5_+_150460681 -0.98 2.89 3.25E-02 chr5:150460681-150460863 + TSSregion500,AS
ENST00000520931.1/ENST00000389378.2/ENST00000521591.1/ENST00000518977.1/ENST00000520695.1/ENST00000522926.1
TNIP1 TNFAIP3 interacting protein 1
3737
Persson et al.
chr5_+_177027101 -0.86 3.75 3.09E-02 chr5:177027101-177027237 + TSS,S
ENST00000505433.1/ENST00000510761.1/ENST00000505468.1/ENST00000502420.1
B4GALT7xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7
chr5_+_32221993 -0.58 4.36 5.58E-02 chr5:32221993-32222026 + TSSregion500,S ENST00000477507.1 CTD-2186M15.1
chr5_+_55240433 -0.71 3.90 3.01E-02 chr5:55240433-55240451 +CDS_or_noncoding_first_intron,AS
ENST00000381286.3/ENST00000523039.1 IL6ST
interleukin 6 signal transducer (gp130, oncostatin M receptor)
chr5_+_60628054 0.73 5.49 7.28E-03 chr5:60628054-60628105 + TSS,S ENST00000252744.5 ZSWIM6 zinc finger, SWIM-type containing 6
chr5_+_76878154 -0.86 1.92 8.68E-02 chr5:76878154-76878177 + TSSregion500,S ENST00000493874.1 RP11-526L22.1
chr5_+_79703416 0.91 1.68 7.46E-02 chr5:79703416-79703439 + TSSregion500,S
ENST00000338008.5/ENST00000510158.1/ENST00000505560.1/ENST00000509562.1/ENST00000512558.1/ENST00000510995.1/ENST00000512442.1
ZFYVE16 zinc finger, FYVE domain containing 16
chr5_+_79703805 0.60 5.06 1.48E-02 chr5:79703805-79703925 + TSS,S
ENST00000338008.5/ENST00000510158.1/ENST00000505560.1/ENST00000509562.1/ENST00000512558.1/ENST00000510995.1
ZFYVE16 zinc finger, FYVE domain containing 16
chr5_+_82819235 2.15 0.27 7.46E-02 chr5:82819235-82819248 +CDS_or_noncoding_inner_intron,S
ENST00000265077.3/ENST00000343200.5/ENST00000342785.4/ENST00000512590.2/ENST00000502527.2
VCAN versican
chr5_+_85913712 -0.51 8.21 8.90E-02 chr5:85913712-85913905 + TSS,S
ENST00000247655.3/ENST00000509578.1/ENST00000515763.1/ENST00000511472.1/ENST00000505430.1/ENST00000513124.1
COX7C cytochrome c oxidase subunit VIIc
chr5_+_91562280 -0.75 8.62 5.33E-03 chr5:91562280-91562295 +CDS_or_noncoding_inner_intron,S
ENST00000502934.1/ENST00000507217.1 RP11-348J24.2
chr5_-_159707554 1.44 0.27 6.85E-02 chr5:159707554-159707752 -CDS_or_noncoding_inner_exon,S
ENST00000393977.3/ENST00000257536.7/ENST00000519673.1/ENST00000541762.1/ENST00000520748.1/ENST00000505287.2/ENST00000377503.2
CCNJL cyclin J-like
3838
Persson et al.
chr5_-_18746175 0.99 2.61 3.42E-02 chr5:18746175-18746329 - TSS,S ENST00000512978.1 CTD-2023M8.1
chr5_-_6378521 -0.47 4.67 9.13E-02 chr5:6378521-6378707 - TSS,S ENST00000255764.3/ENST00000504058.1 MED10 mediator complex
subunit 10
chr5_-_79946714 -2.52 2.21 8.68E-02 chr5:79946714-79946867 - 5UTR_first_intron,S ENST00000504396.1 DHFR dihydrofolate reductase
chr5_-_93447217 0.63 5.71 9.65E-02 chr5:93447217-93447394 - TSS,SENST00000395965.3/ENST00000505869.1/ENST00000509163.1
FAM172Afamily with sequence similarity 172, member A
chr5_-_94417257 0.52 6.55 2.48E-02 chr5:94417257-94417377 - TSS,S
ENST00000429576.2/ENST00000508509.1/ENST00000512425.1/ENST00000505208.1/ENST00000510732.1/ENST00000513857.1
MCTP1 multiple C2 domains, transmembrane 1
chr6_+_108880957 -0.58 5.95 4.47E-02 chr6:108880957-108881031 + TSSregion500,S ENST00000343882.6 FOXO3 forkhead box O3chr6_+_13289737 -1.55 0.83 5.41E-02 chr6:13289737-13289823 + intergenic intergenic NA NA
chr6_+_138188328 -1.09 6.83 2.48E-02 chr6:138188328-138188507 + TSS,S ENST00000421450.1/ENST00000420009.1 TNFAIP3 tumor necrosis factor,
alpha-induced protein 3chr6_+_144606710 1.06 3.88 8.82E-04 chr6:144606710-144606829 + TSSregion500,S ENST00000433557.1 UTRN utrophinchr6_+_144665236 0.63 7.36 8.03E-02 chr6:144665236-144665413 + TSS,S ENST00000421035.1 UTRN utrophin
chr6_+_154566797 -3.09 0.39 5.33E-03 chr6:154566797-154566904 + CDS_or_noncoding_last_intron,S ENST00000337049.4 OPRM1 opioid receptor, mu 1
chr6_+_21593931 -0.74 4.20 4.28E-02 chr6:21593931-21594047 + TSS,S ENST00000244745.1 SOX4 SRY (sex determining region Y)-box 4
chr6_+_21597506 -1.71 -0.12 8.99E-02 chr6:21597506-21597656 + 3UTR_first_exon,S ENST00000244745.1 SOX4 SRY (sex determining
region Y)-box 4chr6_+_26204717 -0.47 9.24 6.10E-02 chr6:26204717-26204861 + TSS,S ENST00000360441.4 HIST1H4E histone cluster 1, H4echr6_+_26240544 -0.59 6.39 6.80E-02 chr6:26240544-26240740 + TSS,S ENST00000377745.2 HIST1H4F histone cluster 1, H4f
chr6_+_29910526 2.18 1.73 8.60E-02 chr6:29910526-29910551 + 5UTR_inner_exon,S ENST00000536480.1 HLA-A
HLA class I histocompatibility antigen, A-1 alpha chain variant
chr6_+_31601762 -1.14 1.72 2.48E-02 chr6:31601762-31601777 + TSSregion500,S ENST00000460302.1/ENST00000484787.1 PRRC2A proline-rich coiled-coil
2A
chr6_+_43603551 -0.54 3.45 8.73E-02 chr6:43603551-43603610 + TSS,S ENST00000372171.4/ENST00000508232.1 MAD2L1BP MAD2L1 binding
protein
chr6_+_76311857 0.97 1.79 9.10E-02 chr6:76311857-76311904 + TSSregion500,S
ENST00000538088.1/ENST00000370014.3/ENST00000447266.2/ENST00000327284.8/ENST00000493959.2
SENP6 SUMO1/sentrin specific peptidase 6
chr6_-_111045018 2.80 0.03 1.40E-02 chr6:111045018-111045064 - CDS_or_noncoding_first_intron,S
ENST00000463016.1/ENST00000460913.1 CDK19 cyclin-dependent
kinase 19
chr6_-_116600964 -0.39 5.96 6.71E-02 chr6:116600964-116601122 - TSS,S ENST00000368608.3/ENST00000545830.1 TSPYL1 TSPY-like 1
3939
Persson et al.
chr6_-_133035018 1.08 5.34 8.73E-02 chr6:133035018-133035204 - TSS,S ENST00000367928.4 VNN1 vanin 1
chr6_-_133076976 1.25 1.09 4.88E-02 chr6:133076976-133077136 -CDS_or_noncoding_inner_exon,S
ENST00000418593.2/ENST00000326499.6/ENST00000422400.2/ENST00000392389.2/ENST00000525270.1/ENST00000525289.1/ENST00000525674.1/ENST00000532053.1/ENST00000533835.1/ENST00000531279.1/ENST00000526157.1/ENST00000526192.1
VNN2 vanin 2
chr6_-_16761542 0.54 6.04 8.68E-02 chr6:16761542-16761737 - TSS,S
ENST00000244769.3/ENST00000436367.1/ENST00000450222.1/ENST00000344707.2/ENST00000296858.5/ENST00000473388.1/ENST00000483954.1/ENST00000467008.1/ENST00000498374.1/ENST00000492857.1/ENST00000479680.1
ATXN1Ataxin 1, isoform CRA_a; Uncharacterized protein
chr6_-_43197089 -0.55 3.47 8.64E-02 chr6:43197089-43197245 - TSS,SENST00000230431.6/ENST00000509253.1/ENST00000393987.2
C6ORF108 NA
chr6_-_84937306 0.80 2.45 6.76E-02 chr6:84937306-84937410 - TSS,S
ENST00000257766.4/ENST00000403245.3/ENST00000435955.1/ENST00000497936.1
KIAA1009 KIAA1009
chr7_+_131012587 0.47 6.71 3.66E-02 chr7:131012587-131012732 + TSS,S
ENST00000446815.1/ENST00000352689.6/ENST00000388758.2/ENST00000458153.1/ENST00000494286.1/ENST00000494785.1
MKLN1muskelin 1, intracellular mediator containing kelch motifs
chr7_+_139586200 1.32 1.80 3.25E-02 chr7:139586200-139586214 + CDS_or_noncoding_first_intron,S ENST00000462275.1 TBXAS1 thromboxane A
synthase 1 (platelet)
chr7_+_28802360 2.21 -0.07 2.48E-02 chr7:28802360-28802377 +CDS_or_noncoding_inner_intron,S
ENST00000396299.2/ENST00000357727.2/ENST00000396300.2/ENST00000409603.1/ENST00000426500.1/ENST00000396298.2
CREB5cAMP responsive element binding protein 5
4040
Persson et al.
chr7_+_37723315 0.74 5.36 1.48E-02 chr7:37723315-37723483 + TSS,S
ENST00000450180.1/ENST00000476620.1/ENST00000447769.1/ENST00000461610.1/ENST00000467202.1
GPR141 G protein-coupled receptor 141
chr7_+_50344637 -0.88 2.56 3.25E-02 chr7:50344637-50344708 + 5UTR_first_intron,S
ENST00000440768.2/ENST00000359197.5/ENST00000357364.4/ENST00000349824.4/ENST00000343574.5/ENST00000346667.4/ENST00000331340.3/ENST00000413698.1
IKZF1 IKAROS family zinc finger 1 (Ikaros)
chr7_+_77166493 0.66 5.23 4.09E-02 chr7:77166493-77166664 + TSS,S ENST00000248594.6 PTPN12protein tyrosine phosphatase, non-receptor type 12
chr7_+_90225935 1.23 2.98 6.36E-03 chr7:90225935-90226005 + TSSregion500,S ENST00000380050.3 CDK14 cyclin-dependent kinase 14
chr7_-_105905967 0.88 4.63 9.08E-02 chr7:105905967-105905969 -CDS_or_noncoding_inner_intron,S
ENST00000222553.3/ENST00000354289.4 NAMPT
nicotinamide phosphoribosyltransferase
chr7_-_111846396 1.19 4.66 7.70E-03 chr7:111846396-111846572 - TSS,SENST00000428084.1/ENST00000437633.1/ENST00000476846.1
DOCK4 dedicator of cytokinesis 4
chr7_-_130794642 0.88 2.93 5.58E-02 chr7:130794642-130794706 - TSSregion500,S ENST00000451786.1 AC058791.2
chr7_-_142247565 -0.61 4.23 7.69E-02 chr7:142247565-142247650 - TSS,S ENST00000390361.3 TRBV7-3 T cell receptor beta variable 7-3
chr7_-_142511011 -0.72 3.55 4.06E-02 chr7:142511011-142511184 - TSS,S ENST00000417977.2 TRBV30T cell receptor beta variable 30 (gene/pseudogene)
chr7_-_2883845 -0.80 4.67 2.48E-02 chr7:2883845-2884045 - TSS,S ENST00000275364.3 GNA12guanine nucleotide binding protein (G protein) alpha 12
chr8_+_100025062 1.33 0.57 7.46E-02 chr8:100025062-100025143 + TSSregion500,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_100025274 0.93 5.21 8.81E-05 chr8:100025274-100025332 + TSSregion500,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
4141
Persson et al.
chr8_+_100108531 2.98 0.19 1.75E-03 chr8:100108531-100108654 +CDS_or_noncoding_inner_exon,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_128807989 1.35 0.84 7.91E-02 chr8:128807989-128808103 + TSS,SENST00000517790.1/ENST00000522963.1/ENST00000518528.1
PVT1 Pvt1 oncogene (non-protein coding)
chr8_+_142726317 -1.44 -0.22 7.71E-02 chr8:142726317-142726327 + intergenic intergenic NA NA
chr8_+_23424071 -0.87 3.86 5.90E-02 chr8:23424071-23424155 + TSSregion500,S ENST00000522164.1/ENST00000521637.1 SLC25A37
solute carrier family 25 (mitochondrial iron transporter), member 37
chr8_+_23430115 -1.88 -0.62 4.65E-02 chr8:23430115-23430150 + TSSregion500,S ENST00000399967.3 AC051642.1
chr8_+_25042178 0.51 6.75 9.10E-02 chr8:25042178-25042326 + TSS,S ENST00000410074.1/ENST00000481100.1 DOCK5 dedicator of cytokinesis
5chr8_+_7380136 -1.23 1.80 3.74E-02 chr8:7380136-7380152 + intergenic intergenic NA NAchr8_+_8777573 0.90 2.56 8.73E-02 chr8:8777573-8777660 + intergenic intergenic NA NA
chr8_+_97657450 0.45 6.40 5.41E-02 chr8:97657450-97657618 + TSS,SENST00000220763.5/ENST00000519900.1/ENST00000517742.1
PGCP NA
chr8_-_123683573 0.87 4.74 4.54E-02 chr8:123683573-123683766 - 5UTR_inner_intron,S ENST00000521608.1 RP11-973F15.1
chr8_-_133772746 0.54 7.42 3.59E-02 chr8:133772746-133772920 - TSS,S
ENST00000523829.1/ENST00000377901.4/ENST00000356838.3/ENST00000522334.1/ENST00000519016.1/ENST00000519187.1/ENST00000519304.1/ENST00000517538.1
TMEM71 transmembrane protein 71
chr8_-_71316022 0.75 2.76 5.99E-02 chr8:71316022-71316077 - TSS,S ENST00000452400.2 NCOA2 nuclear receptor coactivator 2
chr9_+_106754398 -1.44 -0.14 8.03E-02 chr9:106754398-106754403 + intergenic intergenic NA NA
chr9_+_109075381 1.67 2.18 4.93E-02 chr9:109075381-109075504 +CDS_or_noncoding_inner_intron,S
ENST00000435485.1 RP11-308N19.1
chr9_+_111389046 -0.64 6.30 1.48E-02 chr9:111389046-111389163 + TSS,S ENST00000306634.3 RP11-220D10.1
chr9_+_127420623 1.22 2.34 5.58E-02 chr9:127420623-127420808 + TSS,S ENST00000429139.1 MIR181A2HG MIR181A2 host gene (non-protein coding)
chr9_+_134510921 1.63 1.23 5.90E-02 chr9:134510921-134511065 + 5UTR_inner_intron,AS
ENST00000437236.1/ENST00000398415.2/ENST00000372191.2/ENST00000431470.1
RAPGEF1Rap guanine nucleotide exchange factor (GEF) 1
chr9_+_141107496 0.84 3.41 8.03E-02 chr9:141107496-141107541 + TSS,S ENST00000446912.1 FAM157B family with sequence
4242
Persson et al.
similarity 157, member B
chr9_+_33993703 -1.24 0.39 8.73E-02 chr9:33993703-33993710 + 5UTR_inner_intron,AS ENST00000379239.4 UBAP2 ubiquitin associated
protein 2
chr9_+_5079501 2.17 -0.75 9.65E-02 chr9:5079501-5079517 +CDS_or_noncoding_inner_intron,S
ENST00000539801.1/ENST00000381652.3/ENST00000544510.1
JAK2 Janus kinase 2
chr9_+_74204443 -0.55 8.21 8.30E-02 chr9:74204443-74204473 + TSSregion500,S ENST00000437667.1 RP11-563H8.2chr9_+_92142178 1.64 0.68 2.48E-02 chr9:92142178-92142376 + intergenic intergenic NA NA
chr9_-_107690334 0.72 5.21 3.25E-02 chr9:107690334-107690529 - TSS,SENST00000374736.3/ENST00000423487.2/ENST00000374733.1
ABCA1ATP-binding cassette, sub-family A (ABC1), member 1
chr9_-_127624192 -0.39 9.01 5.96E-02 chr9:127624192-127624274 - TSS,S
ENST00000493018.1/ENST00000348462.3/ENST00000487431.1/ENST00000495728.1
RPL35 ribosomal protein L35
chr9_-_140100023 -0.51 3.86 9.65E-02 chr9:140100023-140100137 - TSS,S ENST00000343666.5/ENST00000537254.1 TMEM203 transmembrane protein
203
chr9_-_73028820 -0.85 3.58 6.10E-02 chr9:73028820-73028894 - 5UTR_first_exon,S ENST00000377126.2 KLF9 Kruppel-like factor 9
chr9_-_80646818 0.59 4.39 8.31E-02 chr9:80646818-80646920 - TSSregion500,S ENST00000286548.4 GNAQguanine nucleotide binding protein (G protein), q polypeptide
chrM_+_11718 -1.64 3.77 7.62E-02 chrM:11718-11724 + intergenic intergenic NA NAchrM_+_11848 -0.83 6.24 3.66E-02 chrM:11848-11913 + intergenic intergenic NA NAchrM_+_13003 -1.81 0.24 6.61E-02 chrM:13003-13004 + intergenic intergenic NA NAchrM_+_13053 -1.03 3.81 5.24E-02 chrM:13053-13056 + intergenic intergenic NA NAchrM_+_8635 -0.57 5.94 5.08E-02 chrM:8635-8670 + intergenic intergenic NA NAchrM_+_9303 -0.92 3.35 9.92E-02 chrM:9303-9314 + intergenic intergenic NA NA
chrX_+_17024264 0.61 5.77 8.95E-02 chrX:17024264-17024436 + 5UTR_inner_exon,S ENST00000380064.4 REPS2
RALBP1 associated Eps domain containing 2
chrX_+_70520082 -0.74 3.80 5.57E-02 chrX:70520082-70520265 + TSSregion500,S ENST00000536900.1 AL590762.1
chrX_+_71320933 0.55 7.12 8.75E-02 chrX:71320933-71321070 + CDS_or_noncoding_first_intron,S ENST00000540800.1 NHSL2 NHS-like 2
chrX_+_77166100 0.44 5.65 5.49E-02 chrX:77166100-77166283 + TSS,S
ENST00000343912.6/ENST00000343533.5/ENST00000350425.4/ENST00000341514.6/ENST00000400860.5
ATP7AATPase, Cu++ transporting, alpha polypeptide
chrX_-_106960136 -0.60 9.30 6.27E-02 chrX:106960136-106960300 - TSS,S ENST00000503515.1 TSC22D3 TSC22 domain family, member 3
4343
233
Persson et al.
Table E5. Differentially expressed tag clusters for SA vs CA.
TC logFC logCPM Adj. P Position Strand Annotation Transcript iD Gene symbol Description
chr10_+_105200035 -1.90 -0.45 2.25E-02 chr10:105200035-105200135 + CDS_or_noncoding_inner_exon,S ENST00000369797.3 PDCD11 programmed cell death
11
chr10_+_11207376 0.36 9.13 2.50E-02 chr10:11207376-11207492 + TSS,S ENST00000537122.1 CELF2 CUGBP, Elav-like family member 2
chr10_+_112641071 0.66 3.06 6.47E-02 chr10:112641071-112641259 + CDS_or_noncoding_inner_exon,S
ENST00000280154.7/ENST00000393104.2/ENST00000444997.1/ENST00000467574.1/ENST00000483670.1/ENST00000492932.1
PDCD4programmed cell death 4 (neoplastic transformation inhibitor)
chr10_+_12391541 0.49 6.04 9.46E-02 chr10:12391541-12391739 + TSS,S ENST00000378845.1/ENST00000487696.1 CAMK1D
calcium/calmodulin-dependent protein kinase ID
chr10_+_129845769 0.24 8.11 9.74E-02 chr10:129845769-129845961 + TSS,S
ENST00000306042.5/ENST00000487428.1/ENST00000495530.1/ENST00000479896.1
PTPREprotein tyrosine phosphatase, receptor type, E
chr10_+_134351254 0.38 5.53 9.43E-02 chr10:134351254-134351434 + TSS,S
ENST00000368594.3/ENST00000368595.2/ENST00000368593.3/ENST00000416326.2/ENST00000432898.3/ENST00000536599.1
INPP5A inositol polyphosphate-5-phosphatase, 40kDa
chr10_+_17271838 1.63 2.01 2.28E-02 chr10:17271838-17271880 + TSSregion500,S ENST00000469543.1 VIM vimentin
chr10_+_20105327 0.45 5.37 6.46E-02 chr10:20105327-20105379 + TSS,S ENST00000536022.1 PLXDC2 plexin domain containing 2
chr10_+_20105533 0.66 3.77 2.34E-02 chr10:20105533-20105573 + TSSregion500,S
ENST00000377242.3/ENST00000377238.1/ENST00000377252.3/ENST00000536022.1
PLXDC2 plexin domain containing 2
chr10_+_20105824 0.58 4.38 7.10E-02 chr10:20105824-20105907 + TSSregion500,S ENST00000536022.1 PLXDC2 plexin domain containing 2
chr10_+_20179628 1.31 0.31 6.30E-02 chr10:20179628-20179708 + 5UTR_first_intron,S ENST00000377238.1 PLXDC2 plexin domain containing
2
chr10_+_20290746 1.22 0.46 8.58E-02 chr10:20290746-20290917 + 5UTR_inner_exon,S ENST00000377238.1 PLXDC2 plexin domain containing
2chr10_+_26727248 0.42 7.65 2.82E-02 chr10:26727248-26727340 + TSS,S ENST00000490118.1 APBB1IP amyloid beta (A4)
precursor protein-
4444
234235
Persson et al.
binding, family B, member 1 interacting protein
chr10_+_26785217 1.32 0.72 1.62E-02 chr10:26785217-26785285 + CDS_or_noncoding_inner_exon,S
ENST00000445780.1/ENST00000376236.4/ENST00000490118.1/ENST00000356785.4
APBB1IP
amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein
chr10_+_26789818 1.22 1.73 3.36E-02 chr10:26789818-26790007 + CDS_or_noncoding_inner_exon,S
ENST00000445780.1/ENST00000376236.4/ENST00000490118.1
APBB1IP
amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein
chr10_+_31608115 0.45 5.24 9.00E-02 chr10:31608115-31608212 + TSS,S
ENST00000559858.1/ENST00000560721.1/ENST00000541037.1/ENST00000558440.1/ENST00000424869.1/ENST00000437844.2/ENST00000543514.1/ENST00000542815.2/ENST00000483752.2
ZEB1 zinc finger E-box binding homeobox 1
chr10_+_45869611 0.48 7.80 1.24E-02 chr10:45869611-45869730 + TSS,S ENST00000542434.1/ENST00000374391.2 ALOX5 arachidonate 5-
lipoxygenase
chr10_+_45877913 1.25 2.22 6.73E-03 chr10:45877913-45878103 + CDS_or_noncoding_inner_exon,S
ENST00000542434.1/ENST00000374391.2 ALOX5 arachidonate 5-
lipoxygenase
chr10_+_45920406 0.83 2.21 5.20E-02 chr10:45920406-45920552 + CDS_or_noncoding_inner_exon,S
ENST00000542434.1/ENST00000374391.2/ENST00000483623.1
ALOX5 arachidonate 5-lipoxygenase
chr10_+_51489182 0.83 2.29 9.99E-02 chr10:51489182-51489285 + CDS_or_noncoding_inner_intron,S ENST00000429265.2 TIMM23B
translocase of inner mitochondrial membrane 23 homolog B (yeast)
chr10_+_51581267 0.71 2.90 5.52E-02 chr10:51581267-51581327 + 5UTR_inner_exon,S ENST00000414907.2 NCOA4 nuclear receptor
coactivator 4
chr10_+_51582790 0.99 1.60 8.59E-02 chr10:51582790-51582892 + CDS_or_noncoding_inner_exon,S
ENST00000452682.1/ENST00000438493.1/ENST00000430396.2/ENST00000330923.6/ENST00000374087.4/ENST00000414907.2/ENST00000344348.6/ENST00000374082.1/
NCOA4 nuclear receptor coactivator 4
4545
Persson et al.
ENST00000431200.1/ENST00000443446.1/ENST00000498586.1
chr10_+_6186782 0.43 5.24 4.35E-02 chr10:6186782-6186956 + TSS,SENST00000536985.1/ENST00000379789.4/ENST00000379784.4
PFKFB36-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
chr10_+_69644740 2.38 -0.43 4.55E-02 chr10:69644740-69644833 + TSSregion500,SENST00000432464.1/ENST00000497639.1/ENST00000473922.1
SIRT1 sirtuin 1
chr10_+_70502121 1.19 -0.23 9.43E-02 chr10:70502121-70502272 + 5UTR_inner_exon,S
ENST00000536012.1/ENST00000540807.1 CCAR1 cell division cycle and
apoptosis regulator 1
chr10_+_70856830 0.86 3.69 9.78E-03 chr10:70856830-70856963 + CDS_or_noncoding_inner_exon,S ENST00000242465.3 SRGN serglycin
chr10_+_70863631 0.77 4.83 5.06E-02 chr10:70863631-70863772 + CDS_or_noncoding_last_exon,S
ENST00000242465.3/ENST00000462445.1 SRGN serglycin
chr10_+_70863809 2.14 0.30 3.33E-02 chr10:70863809-70863813 + CDS_or_noncoding_last_exon,S
ENST00000242465.3/ENST00000462445.1 SRGN serglycin
chr10_+_70863831 2.29 1.99 3.55E-03 chr10:70863831-70863845 + CDS_or_noncoding_last_exon,S
ENST00000242465.3/ENST00000462445.1 SRGN serglycin
chr10_+_73949655 -1.16 -0.25 6.46E-02 chr10:73949655-73949668 + TSSregion500,S ENST00000416278.1 RP11-570G20.1
chr10_+_79793558 -0.55 11.46 8.75E-02 chr10:79793558-79793664 + TSS,S
ENST00000372360.3/ENST00000401656.1/ENST00000360830.4/ENST00000485708.1/ENST00000478655.1/ENST00000464716.1/ENST00000476545.1/ENST00000466129.1/ENST00000475468.1
RPS24 ribosomal protein S24
chr10_+_89623109 0.85 1.21 7.80E-02 chr10:89623109-89623131 + TSSregion500,S ENST00000371953.3 PTEN phosphatase and tensin homolog
chr10_+_89624021 1.08 1.80 3.01E-02 chr10:89624021-89624152 + TSSregion500,S ENST00000462694.1/ENST00000487939.1 PTEN phosphatase and tensin
homolog
chr10_+_89636687 0.80 4.08 5.52E-02 chr10:89636687-89636701 + CDS_or_noncoding_first_intron,S ENST00000371953.3 PTEN phosphatase and tensin
homolog
4646
Persson et al.
chr10_+_93624834 -1.69 -0.09 2.54E-02 chr10:93624834-93624994 + 3UTR_last_exon,S ENST00000371627.4 TNKS2
tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
chr10_+_97515412 0.61 5.35 1.23E-02 chr10:97515412-97515509 + TSSregion500,S
ENST00000543964.1/ENST00000371207.3/ENST00000371203.5/ENST00000539125.1/ENST00000371205.4/ENST00000483213.1
ENTPD1ectonucleoside triphosphate diphosphohydrolase 1
chr10_+_97599434 1.51 -0.37 7.43E-02 chr10:97599434-97599565 + TSSregion500,S ENST00000461927.1 ENTPD1ectonucleoside triphosphate diphosphohydrolase 1
chr10_-_120514416 0.42 6.51 4.06E-02 chr10:120514416-120514574 - TSS,S ENST00000369156.1 C10ORF46 NA
chr10_-_125851860 0.46 6.86 3.65E-02 chr10:125851860-125851976 - TSS,S ENST00000346248.5/ENST00000546346.1 CHST15
carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
chr10_-_125852195 0.89 2.14 1.79E-02 chr10:125852195-125852264 - TSSregion500,S ENST00000346248.5/ENST00000546346.1 CHST15
carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
chr10_-_30024715 0.60 4.95 4.67E-03 chr10:30024715-30024904 - TSS,S ENST00000375400.3/ENST00000375398.2 SVIL supervillin
chr10_-_30025861 0.76 3.50 1.26E-02 chr10:30025861-30025981 - TSSregion500,S ENST00000465422.1 SVIL supervillinchr10_-_31288304 0.64 4.17 2.50E-02 chr10:31288304-31288498 - TSS,S ENST00000538351.1 ZNF438 zinc finger protein 438
chr10_-_60027618 0.59 5.29 1.24E-02 chr10:60027618-60027815 - TSS,S ENST00000373935.3 IPMK inositol polyphosphate multikinase
chr10_-_73588705 0.73 4.09 6.28E-02 chr10:73588705-73588824 - CDS_or_noncoding_inner_exon,S
ENST00000394936.3/ENST00000373120.1/ENST00000394934.1/ENST00000357471.5/ENST00000404083.2/ENST00000394940.3
PSAP prosaposin
chr10_-_81930578 1.03 2.32 3.56E-02 chr10:81930578-81930669 - 5UTR_inner_exon,S
ENST00000424188.1/ENST00000537102.1/ENST00000372219.3
ANXA11 annexin A11
chr10_-_89822167 1.28 -0.15 5.01E-02 chr10:89822167-89822320 - intergenic intergenic NA NAchr10_-_89864066 0.59 6.31 1.90E-02 chr10:89864066-89864238 - intergenic intergenic NA NA
chr10_-_94000287 0.68 2.22 5.23E-02 chr10:94000287-94000483 - 5UTR_first_intron,S
ENST00000412050.2/ENST00000265997.4 CPEB3
cytoplasmic polyadenylation element binding protein 3
4747
Persson et al.
chr11_+_10506354 1.12 0.70 3.33E-02 chr11:10506354-10506550 + CDS_or_noncoding_inner_exon,S
ENST00000444303.2/ENST00000396554.3/ENST00000534047.1/ENST00000396553.2/ENST00000529834.1/ENST00000528723.1/ENST00000529507.1
AMPD3adenosine monophosphate deaminase 3
chr11_+_108199813 -1.77 -0.32 4.15E-02 chr11:108199813-108199973 + CDS_or_noncoding_inner_exon,S
ENST00000278616.4/ENST00000452508.2/ENST00000524792.1/ENST00000533690.1
ATM ataxia telangiectasia mutated
chr11_+_118224886 -1.24 1.22 5.75E-02 chr11:118224886-118224969 + 3UTR_last_exon,S ENST00000532917.1 CD3G CD3g molecule, gamma (CD3-TCR complex)
chr11_+_120929046 1.37 -0.45 9.89E-02 chr11:120929046-120929160 + CDS_or_noncoding_inner_exon,S
ENST00000529397.1/ENST00000531148.1/ENST00000422003.2/ENST00000533134.1/ENST00000533169.1
TBCEL tubulin folding cofactor E-like
chr11_+_121322776 0.46 8.14 1.91E-02 chr11:121322776-121322875 + TSSregion500,S ENST00000260197.6/ENST00000532451.1 SORL1
sortilin-related receptor, L(DLR class) A repeats containing
chr11_+_121323063 0.52 3.31 7.31E-02 chr11:121323063-121323073 + TSSregion500,S ENST00000532451.1 SORL1sortilin-related receptor, L(DLR class) A repeats containing
chr11_+_121348819 1.13 1.72 2.61E-02 chr11:121348819-121348922 + CDS_or_noncoding_inner_exon,S
ENST00000260197.6/ENST00000532451.1 SORL1
sortilin-related receptor, L(DLR class) A repeats containing
chr11_+_121367553 1.16 0.73 6.01E-02 chr11:121367553-121367736 + CDS_or_noncoding_inner_exon,S
ENST00000260197.6/ENST00000532451.1 SORL1
sortilin-related receptor, L(DLR class) A repeats containing
chr11_+_124616984 -1.73 0.23 5.58E-02 chr11:124616984-124617056 + 3UTR_last_exon,SENST00000284292.5/ENST00000412681.1/ENST00000526916.1
NRGNneurogranin (protein kinase C substrate, RC3)
chr11_+_128638008 0.79 2.70 3.97E-02 chr11:128638008-128638137 + CDS_or_noncoding_inner_exon,S
ENST00000344954.6/ENST00000429175.2/ENST00000534087.1/ENST00000281428.8/ENST00000527767.1
FLI1 Friend leukemia virus integration 1
chr11_+_13371485 1.48 -0.19 4.33E-02 chr11:13371485-13371589 + TSS,S ENST00000485918.2 ARNTL aryl hydrocarbon receptor nuclear
4848
Persson et al.
translocator-like
chr11_+_13690142 0.45 5.97 2.02E-02 chr11:13690142-13690328 + TSS,SENST00000354817.3/ENST00000532701.1/ENST00000355107.6
FAR1 fatty acyl CoA reductase 1
chr11_+_2398510 -0.38 6.55 6.82E-02 chr11:2398510-2398671 + TSS,S ENST00000263645.4 CD81 CD81 molecule
chr11_+_288122 0.91 3.76 1.26E-02 chr11:288122-288140 + TSSregion500,S ENST00000534742.1/ENST00000525217.1 RP11-326C3.2
chr11_+_33279252 0.80 1.62 6.58E-02 chr11:33279252-33279279 + TSSregion500,S ENST00000379016.3/ENST00000303296.4 HIPK3
homeodomain interacting protein kinase 3
chr11_+_33279821 0.50 5.09 8.56E-02 chr11:33279821-33279926 + TSS,S ENST00000531504.1/ENST00000456517.1 HIPK3
homeodomain interacting protein kinase 3
chr11_+_35201810 0.74 4.88 5.01E-02 chr11:35201810-35201931 + TSS,S ENST00000531873.1/ENST00000525209.1 CD44 CD44 molecule (Indian
blood group)
chr11_+_35251775 -0.76 2.95 2.67E-02 chr11:35251775-35251785 + 3UTR_last_exon,S ENST00000263398.6 CD44 CD44 molecule (Indian blood group)
chr11_+_47600559 -0.35 5.59 8.02E-02 chr11:47600559-47600652 + TSS,S
ENST00000263774.4/ENST00000529276.1/ENST00000528192.1/ENST00000530295.1/ENST00000534208.1/ENST00000534716.2/ENST00000533105.1/ENST00000526871.1/ENST00000524568.1
NDUFS3
NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)
chr11_+_58385890 -1.35 0.63 6.39E-02 chr11:58385890-58386064 + 3UTR_last_exon,S ENST00000316059.6 ZFP91 zinc finger protein 91 homolog (mouse)
chr11_+_58992270 1.41 -0.35 7.48E-02 chr11:58992270-58992452 + intergenic intergenic NA NA
chr11_+_59522809 0.57 5.83 1.06E-02 chr11:59522809-59522964 + TSS,S
ENST00000437946.2/ENST00000533637.1/ENST00000529177.1/ENST00000530498.1
STX3 syntaxin 3
chr11_+_59554499 1.16 1.13 4.84E-02 chr11:59554499-59554611 + TSS,S ENST00000528805.1 STX3 syntaxin 3
chr11_+_60237271 -1.76 -0.72 5.39E-02 chr11:60237271-60237456 + 3UTR_last_exon,S
ENST00000345732.4/ENST00000532073.1/ENST00000534668.1/ENST00000389939.2
MS4A1membrane-spanning 4-domains, subfamily A, member 1
chr11_+_63606809 1.14 1.55 1.02E-02 chr11:63606809-63606977 + TSSregion500,S ENST00000402010.2/ MARK2 MAP/microtubule affinity-
4949
Persson et al.
ENST00000377810.3/ENST00000315032.8/ENST00000377809.4/ENST00000413835.2/ENST00000508192.1/ENST00000361128.5/ENST00000350490.7/ENST00000502399.2
regulating kinase 2
chr11_+_64902026 -0.94 0.44 6.46E-02 chr11:64902026-64902118 + TSSregion500,AS
ENST00000294256.8/ENST00000377190.3/ENST00000307289.6/ENST00000434219.2/ENST00000526060.1/ENST00000528487.1/ENST00000449943.1
SYVN1 synovial apoptosis inhibitor 1, synoviolin
chr11_+_65088131 1.98 -0.28 8.01E-02 chr11:65088131-65088171 + 5UTR_last_exon,SENST00000279249.2/ENST00000533419.1/ENST00000544348.1
CDC42EP2 CDC42 effector protein (Rho GTPase binding) 2
chr11_+_65190259 0.67 9.47 1.90E-02 chr11:65190259-65190323 + TSS,S ENST00000501122.2 NEAT1nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65190637 2.22 0.04 3.33E-02 chr11:65190637-65190648 + TSSregion500,S ENST00000499732.1/ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65267556 1.05 3.66 7.47E-02 chr11:65267556-65267563 + CDS_or_noncoding_first_exon,S
ENST00000544868.1/ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65268354 -0.99 3.76 3.65E-02 chr11:65268354-65268357 + CDS_or_noncoding_first_exon,S
ENST00000544868.1/ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65270057 -0.85 8.12 6.10E-02 chr11:65270057-65270107 + CDS_or_noncoding_first_exon,S
ENST00000544868.1/ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65271397 -1.12 2.90 8.24E-02 chr11:65271397-65271405 + CDS_or_noncoding_first_exon,S ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65271566 -1.02 4.33 4.99E-02 chr11:65271566-65271587 + CDS_or_noncoding_first_exon,S ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
5050
Persson et al.
chr11_+_65348659 1.12 0.01 9.60E-02 chr11:65348659-65348813 + TSSregion500,S ENST00000526990.1 EHBP1L1 EH domain binding protein 1-like 1
chr11_+_66888724 1.19 0.10 9.37E-02 chr11:66888724-66888808 + 5UTR_inner_exon,S
ENST00000398645.2/ENST00000529006.1 KDM2A lysine (K)-specific
demethylase 2A
chr11_+_71846707 1.51 4.85 1.34E-02 chr11:71846707-71846814 + TSS,S
ENST00000445078.2/ENST00000456237.1/ENST00000442948.2/ENST00000325101.4
FOLR3 folate receptor 3 (gamma)
chr11_+_74459865 0.37 5.74 5.52E-02 chr11:74459865-74460016 + TSS,S ENST00000299563.4 RNF169 ring finger protein 169
chr11_+_75111724 1.16 1.86 3.29E-02 chr11:75111724-75111820 + TSS,SENST00000525933.1/ENST00000525690.1/ENST00000530170.1
RPS3 ribosomal protein S3
chr11_+_755864 1.17 2.59 4.02E-02 chr11:755864-755976 + TSSregion500,S ENST00000533796.1 TALDO1 transaldolase 1
chr11_+_78138980 1.67 -0.51 4.32E-02 chr11:78138980-78139180 + CDS_or_noncoding_last_intron,S ENST00000534168.1 RP11-
452H21.1
chr11_+_82600510 0.77 2.33 3.45E-02 chr11:82600510-82600619 + 5UTR_first_intron,AS
ENST00000535099.1/ENST00000531801.1/ENST00000534631.1/ENST00000527444.1/ENST00000531128.1/ENST00000528082.1/ENST00000533126.1
PRCP prolylcarboxypeptidase (angiotensinase C)
chr11_+_82870140 -1.80 -0.31 2.61E-02 chr11:82870140-82870164 + CDS_or_noncoding_first_intron,S
ENST00000298281.4/ENST00000530660.1/ENST00000530304.1
PCF11
PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)
chr11_-_10315600 0.69 5.89 7.16E-04 chr11:10315600-10315799 - TSS,S ENST00000256190.8 SBF2 SET binding factor 2
chr11_-_10627666 0.75 4.62 7.15E-03 chr11:10627666-10627849 - CDS_or_noncoding_first_intron,S ENST00000531706.1 LYVE1
lymphatic vessel endothelial hyaluronan receptor 1
chr11_-_10821157 1.69 -0.47 8.56E-02 chr11:10821157-10821275 - TSS,S ENST00000525606.1 EIF4G2eukaryotic translation initiation factor 4 gamma, 2
chr11_-_118081285 1.15 3.26 5.49E-02 chr11:118081285-118081437 - CDS_or_noncoding_inner_exon,S
ENST00000356289.5/ENST00000292067.7/ENST00000533261.1/ENST00000526595.1/ENST00000526620.1/ENST00000537867.1/ENST00000524477.1/ENST00000527877.1/ENST00000525565.1/
AMICA1adhesion molecule, interacts with CXADR antigen 1
5151
Persson et al.
ENST00000534294.1/ENST00000529164.1/ENST00000531536.1
chr11_-_122930413 1.14 1.59 2.85E-02 chr11:122930413-122930534 - TSSregion500,S ENST00000524552.1 HSPA8 heat shock 70kDa protein 8
chr11_-_15643862 1.59 3.08 1.13E-02 chr11:15643862-15644053 - TSS,S ENST00000533082.1 RP11-531H8.2
chr11_-_3849257 1.24 3.78 1.02E-02 chr11:3849257-3849449 - 5UTR_last_exon,S
ENST00000351018.4/ENST00000396979.1/ENST00000396978.1/ENST00000533217.1
RHOG ras homolog family member G
chr11_-_46142520 0.43 4.70 2.89E-02 chr11:46142520-46142695 - TSS,S
ENST00000418153.2/ENST00000532883.1/ENST00000529734.1/ENST00000530312.1
PHF21A PHD finger protein 21A
chr11_-_47381429 1.10 3.54 1.04E-02 chr11:47381429-47381603 - CDS_or_noncoding_inner_exon,S
ENST00000378538.3/ENST00000227163.4/ENST00000533968.1
SPI1
spleen focus forming virus (SFFV) proviral integration oncogene spi1
chr11_-_47417096 0.41 6.66 2.75E-02 chr11:47417096-47417227 - TSS,S ENST00000527426.1 RP11-750H9.5
chr11_-_61187421 1.37 0.11 5.17E-02 chr11:61187421-61187582 - TSSregion500,S ENST00000544147.1 CPSF7cleavage and polyadenylation specific factor 7, 59kDa
chr11_-_72437805 1.55 -0.54 8.24E-02 chr11:72437805-72437849 - CDS_or_noncoding_first_exon,S ENST00000455638.2 ARAP1
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
chr11_-_72525050 0.44 5.02 8.68E-02 chr11:72525050-72525145 - TSSregion500,AS
ENST00000321297.5/ENST00000534905.1/ENST00000435507.2/ENST00000544490.1/ENST00000540567.1/ENST00000439504.2/ENST00000537143.1/ENST00000542908.1
ATG16L2 autophagy related 16-like 2 (S. cerevisiae)
chr11_-_72853079 0.79 1.71 7.81E-02 chr11:72853079-72853085 - TSSregion500,S
ENST00000311172.7/ENST00000409314.1/ENST00000409418.4/ENST00000458644.2
FCHSD2 FCH and double SH3 domains 2
5252
Persson et al.
chr11_-_73387523 -1.19 0.76 8.45E-02 chr11:73387523-73387649 - 3UTR_last_exon,SENST00000310653.5/ENST00000336083.3/ENST00000393571.4
RAB6A RAB6A, member RAS oncogene family
chr11_-_77122859 0.38 7.59 5.52E-02 chr11:77122859-77123054 - TSS,S
ENST00000528203.1/ENST00000529248.1/ENST00000528592.1/ENST00000528633.1
PAK1p21 protein (Cdc42/Rac)-activated kinase 1
chr11_-_77531732 0.60 3.33 4.15E-02 chr11:77531732-77531738 - TSSregion500,S ENST00000467567.1/ENST00000530604.1 RSF1 remodeling and spacing
factor 1
chr11_-_77934480 1.34 -0.11 4.84E-02 chr11:77934480-77934675 - CDS_or_noncoding_inner_exon,S
ENST00000340149.2/ENST00000361507.4 GAB2 GRB2-associated
binding protein 2
chr11_-_78128781 0.69 2.61 4.02E-02 chr11:78128781-78128787 - TSSregion500,S
ENST00000361507.4/ENST00000530915.1/ENST00000526030.1/ENST00000534823.1
GAB2 GRB2-associated binding protein 2
chr11_-_78128806 0.58 5.82 6.06E-03 chr11:78128806-78129004 - TSS,S
ENST00000361507.4/ENST00000530915.1/ENST00000526030.1/ENST00000534823.1
GAB2 GRB2-associated binding protein 2
chr11_-_85779796 1.67 1.42 1.63E-03 chr11:85779796-85779902 - TSS,S ENST00000356360.5/ENST00000534412.1 PICALM
phosphatidylinositol binding clathrin assembly protein
chr11_-_85779972 0.56 8.53 6.40E-04 chr11:85779972-85780172 - TSS,S
ENST00000532317.1/ENST00000526033.1/ENST00000447890.2/ENST00000531558.1/ENST00000532041.1/ENST00000528256.1
PICALMphosphatidylinositol binding clathrin assembly protein
chr12_+_10374491 0.94 1.85 2.75E-02 chr12:10374491-10374585 + 3UTR_last_exon,S
ENST00000542722.1/ENST00000266458.5/ENST00000544284.1/ENST00000541453.1/ENST00000540424.1/ENST00000545887.1/ENST00000541960.1/ENST00000546017.1/ENST00000539170.1
GABARAPL1 GABA(A) receptor-associated protein like 1
5353
Persson et al.
chr12_+_105064122 1.35 -0.29 6.88E-02 chr12:105064122-105064142 + CDS_or_noncoding_last_intron,S
ENST00000549260.1/ENST00000303694.5/ENST00000549016.1
CHST11carbohydrate (chondroitin 4) sulfotransferase 11
chr12_+_119442508 -1.19 1.13 3.58E-02 chr12:119442508-119442521 + CDS_or_noncoding_first_intron,S ENST00000267260.4 SRRM4 serine/arginine repetitive
matrix 4
chr12_+_121014412 -1.15 2.43 5.34E-02 chr12:121014412-121014530 + CDS_or_noncoding_last_exon,S
ENST00000325954.4/ENST00000458409.2/ENST00000413266.2/ENST00000538254.1/ENST00000535470.1/ENST00000542701.1/ENST00000544805.1
RNF10 ring finger protein 10
chr12_+_14426652 1.35 1.05 3.50E-02 chr12:14426652-14426725 + intergenic intergenic NA NA
chr12_+_14518558 0.40 5.98 8.33E-02 chr12:14518558-14518670 + TSS,S
ENST00000261168.4/ENST00000538511.1/ENST00000545723.1/ENST00000543189.1/ENST00000536444.1/ENST00000539659.1/ENST00000537653.1
ATF7IPactivating transcription factor 7 interacting protein
chr12_+_1863418 1.68 -0.35 4.37E-02 chr12:1863418-1863609 + 5UTR_inner_exon,S ENST00000357103.4 ADIPOR2 adiponectin receptor 2
chr12_+_25205629 0.42 7.47 4.33E-02 chr12:25205629-25205692 + TSS,SENST00000554942.1/ENST00000547044.1/ENST00000549437.1
LRMP lymphoid-restricted membrane protein
chr12_+_31882124 0.53 4.74 4.97E-02 chr12:31882124-31882302 + TSSregion500,AS
ENST00000281471.6/ENST00000537562.1/ENST00000541931.1/ENST00000536761.1/ENST00000542781.1/ENST00000535408.1/ENST00000537960.1/ENST00000457428.2/ENST00000541541.1/ENST00000422146.2/ENST00000509386.2
AMN1antagonist of mitotic exit network 1 homolog (S. cerevisiae)
chr12_+_32112088 0.69 5.31 1.12E-02 chr12:32112088-32112172 + TSSregion500,S
ENST00000540924.1/ENST00000312561.4/ENST00000541981.1/ENST00000535596.1/
C12ORF35 NA
5454
Persson et al.
ENST00000397578.3/ENST00000535606.1
chr12_+_32112314 0.40 8.75 3.92E-02 chr12:32112314-32112394 + TSS,S
ENST00000540924.1/ENST00000312561.4/ENST00000535596.1/ENST00000397578.3
C12ORF35 NA
chr12_+_32112413 0.83 1.33 6.88E-02 chr12:32112413-32112421 + TSSregion500,S
ENST00000540924.1/ENST00000312561.4/ENST00000541981.1/ENST00000535596.1/ENST00000397578.3/ENST00000535606.1
C12ORF35 NA
chr12_+_32123111 0.97 3.36 3.77E-02 chr12:32123111-32123292 + 5UTR_inner_exon,S
ENST00000312561.4/ENST00000381054.3 C12ORF35 NA
chr12_+_32638822 0.56 6.45 1.67E-02 chr12:32638822-32639001 + TSS,S ENST00000531134.1 FGD4 FYVE, RhoGEF and PH domain containing 4
chr12_+_40618750 0.53 7.05 1.40E-02 chr12:40618750-40618945 + TSS,S ENST00000343742.2/ENST00000298910.7 LRRK2 leucine-rich repeat
kinase 2
chr12_+_40643614 0.85 1.65 9.97E-02 chr12:40643614-40643724 + CDS_or_noncoding_inner_exon,S
ENST00000416796.1/ENST00000343742.2/ENST00000298910.7
LRRK2 leucine-rich repeat kinase 2
chr12_+_4410650 -1.13 1.50 8.84E-03 chr12:4410650-4410657 + 3UTR_last_exon,S ENST00000261254.3 CCND2 cyclin D2
chr12_+_46384674 -1.21 0.03 9.97E-02 chr12:46384674-46384769 + TSSregion500,AS
ENST00000369367.3/ENST00000266589.6/ENST00000395454.2/ENST00000395453.1/ENST00000474828.1
SCAF11 SR-related CTD-associated factor 11
chr12_+_51019750 1.78 0.78 2.52E-03 chr12:51019750-51019809 + CDS_or_noncoding_inner_exon,S
ENST00000455310.1/ENST00000301180.5/ENST00000549620.1
DIP2BDIP2 disco-interacting protein 2 homolog B (Drosophila)
chr12_+_51324884 -1.45 0.04 4.37E-02 chr12:51324884-51324894 + 3UTR_last_exon,S ENST00000548553.1/ENST00000332160.4 METTL7A methyltransferase like
7A
chr12_+_51634115 1.60 2.60 7.15E-03 chr12:51634115-51634214 + 5UTR_inner_exon,S ENST00000551313.1 DAZAP2 DAZ associated protein
2
chr12_+_57870607 0.46 3.77 7.09E-02 chr12:57870607-57870697 + TSSregion500,AS ENST00000552953.1/ENST00000547200.1 ARHGAP9 Rho GTPase activating
protein 9
5555
Persson et al.
chr12_+_57916472 0.35 5.96 7.88E-02 chr12:57916472-57916668 + TSS,S
ENST00000355673.3/ENST00000546632.1/ENST00000549623.1/ENST00000431731.2/ENST00000300263.6
MBD6 methyl-CpG binding domain protein 6
chr12_+_57918771 0.75 1.84 6.41E-02 chr12:57918771-57918854 + 5UTR_inner_exon,S
ENST00000549623.1/ENST00000300263.6 MBD6 methyl-CpG binding
domain protein 6
chr12_+_57919133 1.08 0.99 6.30E-02 chr12:57919133-57919236 + 5UTR_inner_exon,S ENST00000300263.6 MBD6 methyl-CpG binding
domain protein 6
chr12_+_62654125 0.31 8.82 9.23E-02 chr12:62654125-62654251 + TSS,S
ENST00000280377.5/ENST00000393654.3/ENST00000549523.1/ENST00000312635.6/ENST00000549237.1/ENST00000550632.1/ENST00000548524.1/ENST00000546718.1/ENST00000551206.1/ENST00000537297.2
USP15 ubiquitin specific peptidase 15
chr12_+_65004199 0.35 7.79 5.37E-02 chr12:65004199-65004303 + TSS,S
ENST00000541539.1/ENST00000336061.2/ENST00000283172.4/ENST00000542104.1/ENST00000540088.1
RASSF3Ras association (RalGDS/AF-6) domain family member 3
chr12_+_66582670 1.34 -0.02 7.20E-02 chr12:66582670-66582716 + TSSregion500,SENST00000261233.4/ENST00000545837.1/ENST00000457197.2
IRAK3 interleukin-1 receptor-associated kinase 3
chr12_+_66582922 0.64 5.44 4.09E-02 chr12:66582922-66583121 + TSS,S ENST00000545837.1/ENST00000457197.2 IRAK3 interleukin-1 receptor-
associated kinase 3
chr12_+_69747044 -1.33 0.82 2.90E-02 chr12:69747044-69747052 + CDS_or_noncoding_last_exon,S ENST00000549690.1 LYZ lysozyme
chr12_+_7061207 0.68 3.56 3.65E-02 chr12:7061207-7061289 + CDS_or_noncoding_inner_exon,S
ENST00000542848.1/ENST00000399448.1/ENST00000447931.2/ENST00000538715.1/ENST00000318974.9/ENST00000456013.1/ENST00000535462.1/ENST00000541698.1/ENST00000542462.1/
PTPN6protein tyrosine phosphatase, non-receptor type 6
5656
Persson et al.
ENST00000536013.1/ENST00000543120.1/ENST00000534900.1/ENST00000538318.1/ENST00000540740.1/ENST00000416215.2/ENST00000545153.1/ENST00000542277.1/ENST00000539365.1
chr12_+_70671903 2.40 -0.59 6.41E-02 chr12:70671903-70672057 + TSS,S
ENST00000547867.1/ENST00000551873.1/ENST00000550194.1/ENST00000548599.1
CNOT2 CCR4-NOT transcription complex, subunit 2
chr12_+_81331585 1.01 1.51 4.95E-02 chr12:81331585-81331643 + TSS,S ENST00000549175.1 ACSS3acyl-CoA synthetase short-chain family member 3
chr12_+_862837 1.08 2.76 5.52E-02 chr12:862837-862940 + 5UTR_first_exon,S ENST00000252477.7 WNK1 WNK lysine deficient
protein kinase 1chr12_+_94542345 0.55 6.49 1.13E-02 chr12:94542345-94542539 + TSS,S ENST00000258526.4 PLXNC1 plexin C1
chr12_+_94543401 0.88 3.58 1.55E-02 chr12:94543401-94543537 + CDS_or_noncoding_first_exon,S ENST00000258526.4 PLXNC1 plexin C1
chr12_-_100536476 0.49 5.83 7.10E-02 chr12:100536476-100536668 - TSS,SENST00000279907.7/ENST00000356828.3/ENST00000547428.1
UHRF1BP1L UHRF1 binding protein 1-like
chr12_-_10282695 0.31 8.48 6.06E-02 chr12:10282695-10282895 - TSS,S
ENST00000353231.5/ENST00000529761.1/ENST00000298523.5/ENST00000396484.2/ENST00000304084.8/ENST00000531192.1/ENST00000310002.4/ENST00000525605.1/ENST00000534609.1/ENST00000528799.1
CLEC7A C-type lectin domain family 7, member A
chr12_-_109017534 0.88 1.83 9.46E-02 chr12:109017534-109017578 - CDS_or_noncoding_last_exon,S
ENST00000388962.3/ENST00000550948.1/ENST00000228463.6
SELPLG selectin P ligand
chr12_-_120652665 1.13 0.88 1.94E-02 chr12:120652665-120652806 - 5UTR_inner_exon,S ENST00000331257.5 PXN paxillin
chr12_-_53931191 1.19 0.95 1.40E-02 chr12:53931191-53931346 - CDS_or_noncodin ENST00000420353.1/ ATF7 activating transcription
5757
Persson et al.
g_inner_exon,S
ENST00000306727.9/ENST00000415113.1/ENST00000548446.1/ENST00000328463.7/ENST00000456903.3
factor 7
chr12_-_56123073 -1.09 1.38 5.33E-02 chr12:56123073-56123092 - TSSregion500,S
ENST00000420846.2/ENST00000549117.1/ENST00000257857.4/ENST00000550050.1/ENST00000552164.1
CD63 CD63 molecule
chr12_-_57870518 1.07 0.19 7.73E-02 chr12:57870518-57870566 - TSSregion500,S ENST00000552953.1/ENST00000547200.1 ARHGAP9 Rho GTPase activating
protein 9
chr12_-_72003949 -1.11 0.79 8.27E-02 chr12:72003949-72004144 - CDS_or_noncoding_last_exon,S ENST00000550963.1 ZFC3H1 zinc finger, C3H1-type
containing
chr12_-_72057520 0.48 5.69 4.55E-02 chr12:72057520-72057681 - TSS,SENST00000552994.1/ENST00000548100.1/ENST00000552037.1
ZFC3H1 zinc finger, C3H1-type containing
chr12_-_752731 -0.88 6.28 4.35E-02 chr12:752731-752908 - TSS,SENST00000542920.1/ENST00000433832.2/ENST00000537416.1
NINJ2 ninjurin 2
chr12_-_8605602 0.93 2.35 3.26E-02 chr12:8605602-8605787 - intergenic intergenic NA NA
chr12_-_90102557 0.58 4.90 1.09E-02 chr12:90102557-90102575 - TSSregion500,S ENST00000428670.3 ATP2B1ATPase, Ca++ transporting, plasma membrane 1
chr12_-_95044208 0.48 5.65 8.99E-02 chr12:95044208-95044398 - TSS,S ENST00000261226.4 TMCC3transmembrane and coiled-coil domain family 3
chr12_-_95397402 -0.37 6.23 6.30E-02 chr12:95397402-95397552 - TSS,S
ENST00000552205.1/ENST00000547157.1/ENST00000327772.2/ENST00000547986.1/ENST00000546788.1
NDUFA12NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
chr12_-_96390067 0.59 5.16 6.49E-03 chr12:96390067-96390149 - TSS,S
ENST00000261208.3/ENST00000541929.1/ENST00000544080.2/ENST00000538703.1
HAL histidine ammonia-lyase
chr13_+_108930765 0.98 1.08 8.36E-02 chr13:108930765-108930901 + CDS_or_noncoding_first_intron,S ENST00000479435.1 TNFSF13B
tumor necrosis factor (ligand) superfamily, member 13b
5858
Persson et al.
chr13_+_113439463 1.54 0.34 9.89E-02 chr13:113439463-113439528 + TSS,S ENST00000418678.1/ENST00000432166.1 ATP11A ATPase, class VI, type
11A
chr13_+_28712826 0.75 1.88 8.01E-02 chr13:28712826-28712853 + TSSregion500,S ENST00000399613.1/ENST00000503791.1 PAN3
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
chr13_+_32605272 0.77 3.67 5.45E-02 chr13:32605272-32605364 + TSSregion500,S
ENST00000380235.4/ENST00000380257.4/ENST00000380250.3/ENST00000463566.1
FRY furry homolog (Drosophila)
chr13_+_32605751 0.54 6.26 4.02E-02 chr13:32605751-32605928 + TSSregion500,S
ENST00000380235.4/ENST00000380257.4/ENST00000380250.3/ENST00000463566.1
FRY furry homolog (Drosophila)
chr13_+_37665201 0.73 4.60 8.35E-03 chr13:37665201-37665393 + intergenic intergenic NA NA
chr13_+_48807461 0.91 3.78 4.19E-02 chr13:48807461-48807514 + TSSregion500,S ENST00000378565.4/ENST00000378549.5 ITM2B integral membrane
protein 2B
chr13_+_52411185 1.79 -0.36 7.49E-03 chr13:52411185-52411221 + CDS_or_noncoding_inner_intron,AS ENST00000501205.1 LINC00282 NA
chr13_+_96329340 0.30 6.39 8.36E-02 chr13:96329340-96329492 + TSS,S ENST00000376795.5 DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3
chr13_-_46756212 0.85 1.03 8.84E-02 chr13:46756212-46756231 - 5UTR_first_intron,S ENST00000323076.2 LCP1 lymphocyte cytosolic
protein 1 (L-plastin)
chr13_-_50699516 0.47 6.28 7.86E-02 chr13:50699516-50699707 - TSSregion500,S ENST00000425586.1 DLEU2deleted in lymphocytic leukemia 2 (non-protein coding)
chr14_+_102289617 -1.91 -0.32 3.13E-02 chr14:102289617-102289651 + TSSregion500,S ENST00000556493.1 PPP2R5Cprotein phosphatase 2, regulatory subunit B', gamma
chr14_+_102837091 0.67 4.15 4.76E-02 chr14:102837091-102837140 + 5UTR_first_intron,S
ENST00000359520.7/ENST00000558678.1/ENST00000380088.4
TECPR2 tectonin beta-propeller repeat containing 2
chr14_+_103058922 0.41 5.90 3.72E-02 chr14:103058922-103059063 + TSS,S ENST00000262241.5 RCOR1 REST corepressor 1
chr14_+_23020933 -0.99 1.16 5.72E-02 chr14:23020933-23021055 + 3UTR_last_exon,S ENST00000478163.2 TRAC T cell receptor alpha constant
chr14_+_37334414 -1.22 -0.13 5.83E-02 chr14:37334414-37334419 + CDS_or_noncoding_inner_intron,AS
ENST00000555449.1/ENST00000331299.5 SLC25A21
solute carrier family 25 (mitochondrial oxoadipate carrier), member 21
chr14_+_39736548 0.38 5.60 6.41E-02 chr14:39736548-39736636 + TSS,S ENST00000556148.1/ENST00000348007.3 CTAGE5 CTAGE family, member
5
5959
Persson et al.
chr14_+_50361184 -0.57 4.50 7.87E-02 chr14:50361184-50361203 + 3UTR_last_exon,S ENST00000298316.5 ARF6 ADP-ribosylation factor 6
chr14_+_52327110 1.09 1.11 4.41E-02 chr14:52327110-52327166 + TSS,S ENST00000335281.4 GNG2guanine nucleotide binding protein (G protein), gamma 2
chr14_+_56585010 0.57 5.37 2.72E-02 chr14:56585010-56585204 + TSS,S ENST00000267460.4 PELI2pellino E3 ubiquitin protein ligase family member 2
chr14_+_57877726 -1.90 -0.77 3.76E-02 chr14:57877726-57877798 + 3UTR_last_exon,SENST00000556492.1/ENST00000395257.2/ENST00000298406.6
NAA30N(alpha)-acetyltransferase 30, NatC catalytic subunit
chr14_+_58765185 0.46 5.63 5.79E-02 chr14:58765185-58765381 + TSS,S
ENST00000348476.3/ENST00000395168.3/ENST00000431612.1/ENST00000445108.1
ARID4A AT rich interactive domain 4A (RBP1-like)
chr14_+_65171091 0.46 5.76 8.84E-02 chr14:65171091-65171207 + TSS,S ENST00000247226.7 PLEKHG3
pleckstrin homology domain containing, family G (with RhoGef domain) member 3
chr14_+_71374140 0.42 4.92 5.22E-02 chr14:71374140-71374187 + TSSregion500,S
ENST00000238570.5/ENST00000304743.2/ENST00000439984.3/ENST00000554879.1/ENST00000554292.1
PCNX pecanex homolog (Drosophila)
chr14_+_71374383 0.62 5.67 5.23E-03 chr14:71374383-71374451 + TSS,S ENST00000554292.1 PCNX pecanex homolog (Drosophila)
chr14_+_71787138 0.56 5.48 1.13E-02 chr14:71787138-71787226 + TSS,S
ENST00000553453.1/ENST00000555989.1/ENST00000556408.1/ENST00000554126.1/ENST00000556780.1/ENST00000554362.1
SIPA1L1signal-induced proliferation-associated 1 like 1
chr14_+_71787776 0.61 4.88 7.85E-03 chr14:71787776-71787875 + TSSregion500,S ENST00000557151.1 SIPA1L1signal-induced proliferation-associated 1 like 1
chr14_+_72054563 1.54 0.09 2.50E-02 chr14:72054563-72054727 + 5UTR_inner_exon,S
ENST00000381232.3/ENST00000555818.1/ENST00000358550.2
SIPA1L1signal-induced proliferation-associated 1 like 1
chr14_+_75745753 1.31 2.36 1.55E-02 chr14:75745753-75745763 + TSSregion500,S ENST00000556324.1 FOSFBJ murine osteosarcoma viral oncogene homolog
chr14_+_75747250 0.85 2.41 8.17E-02 chr14:75747250-75747309 + TSSregion500,S ENST00000555347.1 FOS FBJ murine
6060
Persson et al.
osteosarcoma viral oncogene homolog
chr14_+_75747627 1.31 2.84 1.30E-02 chr14:75747627-75747702 + CDS_or_noncoding_last_exon,S
ENST00000303562.4/ENST00000535987.1/ENST00000555686.1/ENST00000555672.1/ENST00000555347.1
FOSFBJ murine osteosarcoma viral oncogene homolog
chr14_+_90871925 -1.21 2.03 1.26E-02 chr14:90871925-90871935 + 3UTR_last_exon,S ENST00000356978.4/ENST00000553630.1 CALM1
calmodulin 1 (phosphorylase kinase, delta)
chr14_+_90872381 -0.78 3.78 4.37E-02 chr14:90872381-90872505 + 3UTR_last_exon,S ENST00000356978.4 CALM1calmodulin 1 (phosphorylase kinase, delta)
chr14_+_95651943 0.52 4.27 3.92E-02 chr14:95651943-95652076 + TSSregion500,AS ENST00000556796.1 CTD-2240H23.2
chr14_-_35344462 0.41 6.46 2.35E-02 chr14:35344462-35344607 - TSSregion500,S
ENST00000358716.4/ENST00000382422.2/ENST00000360310.1/ENST00000543083.1
BAZ1A bromodomain adjacent to zinc finger domain, 1A
chr14_-_50698260 0.47 5.47 2.00E-02 chr14:50698260-50698451 - TSS,S ENST00000216373.5 SOS2 son of sevenless homolog 2 (Drosophila)
chr14_-_51297798 0.39 6.64 7.80E-02 chr14:51297798-51297940 - TSS,S
ENST00000245441.5/ENST00000311149.8/ENST00000389868.3/ENST00000382041.3/ENST00000324330.9/ENST00000453196.1/ENST00000453401.2
NIN ninein (GSK3B interacting protein)
chr14_-_51411077 0.42 7.62 3.62E-02 chr14:51411077-51411249 - TSS,S
ENST00000532462.1/ENST00000531889.1/ENST00000544180.1/ENST00000530336.2
PYGL phosphorylase, glycogen, liver
chr14_-_65543047 -0.82 3.64 5.37E-02 chr14:65543047-65543184 - CDS_or_noncoding_last_exon,S ENST00000555932.1 MAX MYC associated factor X
chr14_-_69256866 0.62 4.04 3.57E-02 chr14:69256866-69256986 - CDS_or_noncoding_inner_exon,S
ENST00000336440.3/ENST00000435246.2 ZFP36L1 zinc finger protein 36,
C3H type-like 1
chr14_-_70655525 1.21 0.00 4.95E-02 chr14:70655525-70655715 - TSSregion500,S
ENST00000494208.1/ENST00000356921.2/ENST00000357887.3/ENST00000381269.2
SLC8A3solute carrier family 8 (sodium/calcium exchanger), member 3
6161
Persson et al.
chr14_-_73930276 0.48 6.99 1.62E-02 chr14:73930276-73930387 - TSS,S
ENST00000556700.1/ENST00000553415.1/ENST00000557577.1/ENST00000557581.1
NUMB numb homolog (Drosophila)
chr14_-_94849358 1.48 0.50 2.50E-02 chr14:94849358-94849361 - 5UTR_first_intron,S ENST00000554720.1 SERPINA1
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
chr14_-_94849388 0.97 4.75 1.15E-02 chr14:94849388-94849586 - TSS,S ENST00000489769.1 SERPINA1
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
chr14_-_94856827 0.97 4.20 1.88E-03 chr14:94856827-94856836 - TSSregion500,S
ENST00000440909.1/ENST00000448921.1/ENST00000437397.1/ENST00000355814.4/ENST00000393088.4/ENST00000404814.4/ENST00000449399.3/ENST00000557492.1/ENST00000556955.1/ENST00000553327.1/ENST00000557118.1/ENST00000555289.1/ENST00000557361.1/ENST00000557093.1
SERPINA1
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
chr14_-_94856845 0.40 10.00 6.88E-02 chr14:94856845-94857039 - TSS,S
ENST00000440909.1/ENST00000448921.1/ENST00000437397.1/ENST00000355814.4/ENST00000393088.4/ENST00000404814.4/ENST00000449399.3/ENST00000557492.1/ENST00000556955.1/ENST00000553327.1/ENST00000557118.1/ENST00000555289.1/ENST00000557361.1/ENST00000557093.1
SERPINA1
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
6262
Persson et al.
chr14_-_95598856 1.48 -0.13 4.84E-02 chr14:95598856-95599018 - CDS_or_noncoding_inner_exon,S
ENST00000343455.3/ENST00000526495.1/ENST00000393063.1/ENST00000527414.1/ENST00000541352.1/ENST00000529206.1
DICER1 dicer 1, ribonuclease type III
chr14_-_95786136 0.77 3.02 5.67E-02 chr14:95786136-95786275 - TSS,S ENST00000298912.3/ENST00000553733.1 CLMN calmin (calponin-like,
transmembrane)
chr14_-_99636882 -1.01 1.89 8.01E-02 chr14:99636882-99637006 - 3UTR_last_exon,S ENST00000357195.3/ENST00000345514.2 BCL11B B-cell CLL/lymphoma
11B (zinc finger protein)
chr14_-_99639178 -2.09 0.37 7.33E-02 chr14:99639178-99639289 - 3UTR_last_exon,S ENST00000357195.3/ENST00000345514.2 BCL11B B-cell CLL/lymphoma
11B (zinc finger protein)
chr15_+_31664212 1.77 1.89 8.19E-03 chr15:31664212-31664310 + 5UTR_last_exon,S ENST00000558844.1 KLF13 Kruppel-like factor 13
chr15_+_45007608 0.95 3.31 2.92E-02 chr15:45007608-45007646 + TSSregion500,SENST00000561139.1/ENST00000560556.1/ENST00000560113.1
B2M beta-2-microglobulin
chr15_+_45951117 1.20 0.67 8.56E-02 chr15:45951117-45951315 + 5UTR_inner_exon,S ENST00000260324.6 SQRDL sulfide quinone
reductase-like (yeast)chr15_+_49170484 1.99 0.50 4.84E-02 chr15:49170484-49170492 + TSSregion500,S ENST00000441252.2 AC012379.1chr15_+_57212073 1.86 -0.40 8.59E-02 chr15:57212073-57212127 + TSSregion500,S ENST00000561152.1 TCF12 transcription factor 12
chr15_+_58430379 0.44 8.26 2.03E-02 chr15:58430379-58430489 + TSS,S ENST00000219919.4/ENST00000559443.1 AQP9 aquaporin 9
chr15_+_58430527 0.99 2.89 9.78E-03 chr15:58430527-58430541 + TSSregion500,SENST00000219919.4/ENST00000536493.1/ENST00000559443.1
AQP9 aquaporin 9
chr15_+_58467095 0.90 1.16 6.88E-02 chr15:58467095-58467206 + CDS_or_noncoding_inner_exon,S
ENST00000558772.1/ENST00000219919.4/ENST00000536493.1
AQP9 aquaporin 9
chr15_+_59280340 0.53 3.11 5.52E-02 chr15:59280340-59280403 + TSSregion500,S ENST00000557998.1 RNF111 ring finger protein 111
chr15_+_65133305 -0.84 2.85 6.99E-02 chr15:65133305-65133312 + upstream1000,S
ENST00000502574.1/ENST00000323544.4/ENST00000546008.1/ENST00000437723.1
AC069368.3 Uncharacterized protein
6363
Persson et al.
chr15_+_65134073 0.38 6.94 3.56E-02 chr15:65134073-65134200 + TSS,S
ENST00000323544.4/ENST00000546008.1/ENST00000437723.1/ENST00000502574.1
PLEKHO2pleckstrin homology domain containing, family O member 2
chr15_+_65140781 1.22 0.97 4.94E-02 chr15:65140781-65140917 + CDS_or_noncoding_inner_exon,S
ENST00000323544.4/ENST00000546008.1/ENST00000437723.1/ENST00000502574.1
PLEKHO2pleckstrin homology domain containing, family O member 2
chr15_+_68584927 -1.52 -0.05 8.83E-02 chr15:68584927-68585004 + 3UTR_last_exon,S ENST00000306917.4 FEM1B fem-1 homolog b (C. elegans)
chr15_+_75095080 -1.38 1.31 3.81E-02 chr15:75095080-75095171 + 3UTR_last_exon,S
ENST00000439220.1/ENST00000220003.8/ENST00000451345.2/ENST00000309470.9
CSK c-src tyrosine kinase
chr15_+_75498963 1.31 2.48 5.75E-02 chr15:75498963-75499009 + 5UTR_first_intron,S ENST00000446981.2 C15ORF39 NA
chr15_+_77287685 0.45 5.92 2.75E-02 chr15:77287685-77287751 + TSS,S ENST00000560621.1/ENST00000560377.1 PSTPIP1
proline-serine-threonine phosphatase interacting protein 1
chr15_+_78462578 -0.80 2.05 7.00E-02 chr15:78462578-78462718 + CDS_or_noncoding_last_exon,S ENST00000558535.1 IDH3A
isocitrate dehydrogenase 3 (NAD+) alpha
chr15_+_81591854 0.84 1.90 9.33E-02 chr15:81591854-81591958 + CDS_or_noncoding_first_exon,S
ENST00000558332.1/ENST00000394656.3 IL16 interleukin 16
chr15_+_85291780 0.47 5.50 3.29E-02 chr15:85291780-85291862 + TSSregion500,S ENST00000560079.1 ZNF592 zinc finger protein 592
chr15_+_86087073 0.52 4.50 9.46E-02 chr15:86087073-86087147 + TSSregion500,S ENST00000558166.1 AKAP13 A kinase (PRKA) anchor protein 13
chr15_+_86087291 0.63 5.03 4.95E-02 chr15:86087291-86087325 + 5UTR_inner_intron,S ENST00000426424.2 AKAP13 A kinase (PRKA) anchor
protein 13
chr15_+_86098560 0.40 5.69 9.97E-02 chr15:86098560-86098700 + TSS,S ENST00000558811.1 AKAP13 A kinase (PRKA) anchor protein 13
chr15_+_89698590 1.35 0.46 4.06E-02 chr15:89698590-89698742 + CDS_or_noncoding_inner_exon,S
ENST00000352732.4/ENST00000355100.3 ABHD2 abhydrolase domain
containing 2
chr15_+_90364626 1.01 1.61 1.24E-02 chr15:90364626-90364795 + intergenic intergenic NA NA
chr15_+_90969336 1.11 2.42 7.86E-03 chr15:90969336-90969500 + TSS,S ENST00000559682.1 IQGAP1IQ motif containing GTPase activating protein 1
chr15_+_91459198 0.48 4.90 9.33E-02 chr15:91459198-91459380 + TSS,SENST00000559341.1/ENST00000560926.1/ENST00000560880.1
MAN2A2 mannosidase, alpha, class 2A, member 2
6464
Persson et al.
chr15_+_92396921 0.48 5.24 3.56E-02 chr15:92396921-92397081 + TSS,S ENST00000318445.6/ENST00000553653.1 SLCO3A1
solute carrier organic anion transporter family, member 3A1
chr15_+_94774580 1.04 2.93 1.63E-03 chr15:94774580-94774633 + TSSregion500,SENST00000543482.1/ENST00000456504.1/ENST00000556363.1
MCTP2 multiple C2 domains, transmembrane 2
chr15_+_94774756 0.39 6.37 8.80E-02 chr15:94774756-94774839 + TSS,S ENST00000543482.1/ENST00000556363.1 MCTP2 multiple C2 domains,
transmembrane 2
chr15_+_94858765 1.47 -0.41 9.77E-02 chr15:94858765-94858840 + 5UTR_inner_exon,S ENST00000331706.4 MCTP2 multiple C2 domains,
transmembrane 2
chr15_+_99797728 1.20 0.63 7.77E-02 chr15:99797728-99797876 + TSS,S ENST00000559111.1 HSP90B2Pheat shock protein 90kDa beta (Grp94), member 2, pseudogene
chr15_-_31283771 0.49 5.37 5.83E-02 chr15:31283771-31283866 - TSS,SENST00000435680.1/ENST00000425768.1/ENST00000340566.4
MTMR10 myotubularin related protein 10
chr15_-_34628631 1.36 -0.18 5.19E-02 chr15:34628631-34628738 - 5UTR_inner_exon,S
ENST00000559523.1/ENST00000458406.2/ENST00000397702.2/ENST00000559484.1
SLC12A6solute carrier family 12 (potassium/chloride transporters), member 6
chr15_-_34629882 0.61 5.47 1.63E-03 chr15:34629882-34629989 - TSS,S
ENST00000354181.3/ENST00000559523.1/ENST00000458406.2/ENST00000559664.1/ENST00000558589.1/ENST00000559484.1
SLC12A6solute carrier family 12 (potassium/chloride transporters), member 6
chr15_-_42783207 0.47 4.90 7.43E-02 chr15:42783207-42783393 - TSS,S ENST00000434903.2 ZFP106 zinc finger protein 106 homolog (mouse)
chr15_-_45018857 0.50 5.37 6.13E-02 chr15:45018857-45018992 - intergenic intergenic NA NA
chr15_-_56285757 0.97 1.99 5.39E-02 chr15:56285757-56285936 - TSS,SENST00000435532.2/ENST00000508075.1/ENST00000557845.1
NEDD4
neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
chr15_-_70015654 0.76 1.75 8.99E-02 chr15:70015654-70015790 - intergenic intergenic NA NAchr15_-_70047854 0.72 2.92 5.75E-02 chr15:70047854-70047963 - intergenic intergenic NA NA
6565
Persson et al.
chr15_-_83777291 0.62 3.11 3.86E-02 chr15:83777291-83777486 - CDS_or_noncoding_first_intron,AS
ENST00000322019.9/ENST00000379390.5/ENST00000379384.4/ENST00000379386.4/ENST00000258909.8
TM6SF1 transmembrane 6 superfamily member 1
chr15_-_90349741 0.82 2.07 4.02E-02 chr15:90349741-90349875 - 5UTR_inner_exon,S ENST00000300060.6 ANPEP alanyl (membrane)
aminopeptidase
chr15_-_90358532 1.23 1.87 2.29E-02 chr15:90358532-90358587 - TSSregion500,SENST00000300060.6/ENST00000559874.1/ENST00000560137.1
ANPEP alanyl (membrane) aminopeptidase
chr16_+_11770394 1.17 1.22 5.42E-02 chr16:11770394-11770479 + 3UTR_last_exon,S ENST00000329565.5 SNN stannin
chr16_+_22448315 0.77 3.83 1.04E-02 chr16:22448315-22448383 + TSS,S ENST00000446662.1 RP11-368J21.1 NA
chr16_+_23847250 0.42 8.64 5.90E-02 chr16:23847250-23847376 + TSS,S ENST00000321728.7/ENST00000303531.7 PRKCB protein kinase C, beta
chr16_+_23847533 1.09 3.50 1.12E-02 chr16:23847533-23847598 + TSSregion500,S ENST00000498058.1 PRKCB protein kinase C, betachr16_+_24043443 1.16 0.27 8.01E-02 chr16:24043443-24043539 + TSSregion500,S ENST00000486868.1 PRKCB protein kinase C, beta
chr16_+_27324879 1.11 0.90 8.60E-02 chr16:27324879-27324932 + TSSregion500,S
ENST00000380925.4/ENST00000449195.1/ENST00000395762.1/ENST00000543915.1/ENST00000380922.3
IL4R interleukin 4 receptor
chr16_+_2807770 0.87 1.68 9.33E-02 chr16:2807770-2807917 + 5UTR_inner_exon,S ENST00000544933.1 SRRM2 serine/arginine repetitive
matrix 2
chr16_+_2820947 -0.96 1.76 5.09E-02 chr16:2820947-2821143 + 3UTR_last_exon,S
ENST00000301740.7/ENST00000382301.2/ENST00000426305.2/ENST00000382300.2
SRRM2 serine/arginine repetitive matrix 2
chr16_+_28997712 -1.47 -0.58 5.38E-02 chr16:28997712-28997744 + CDS_or_noncoding_inner_exon,S
ENST00000395461.3/ENST00000454369.1/ENST00000395456.1/ENST00000360872.4/ENST00000354453.4
LAT linker for activation of T cells
chr16_+_29676225 -1.40 0.57 7.80E-02 chr16:29676225-29676360 + 5UTR_first_intron,S ENST00000449759.1 QPRT
quinolinate phosphoribosyltransferase
6666
Persson et al.
chr16_+_29821572 -1.59 -0.46 8.21E-02 chr16:29821572-29821595 + 3UTR_last_exon,S
ENST00000545521.1/ENST00000219782.5/ENST00000322945.5/ENST00000544343.1
MAZ
MYC-associated zinc finger protein (purine-binding transcription factor)
chr16_+_30486826 1.33 0.65 4.02E-02 chr16:30486826-30486865 + CDS_or_noncoding_inner_exon,S
ENST00000356798.4/ENST00000358164.4/ENST00000454514.2
ITGAL
integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)
chr16_+_30774437 1.87 -0.19 5.92E-02 chr16:30774437-30774561 + TSS,S ENST00000452273.2 RNF40 ring finger protein 40, E3 ubiquitin protein ligase
chr16_+_3096303 0.53 4.28 7.87E-02 chr16:3096303-3096357 + TSSregion500,S ENST00000336577.3 MMP25 matrix metallopeptidase 25
chr16_+_3096550 0.49 7.32 6.10E-02 chr16:3096550-3096652 + TSSregion500,S ENST00000336577.3 MMP25 matrix metallopeptidase 25
chr16_+_3096707 1.47 1.75 4.29E-03 chr16:3096707-3096711 + TSSregion500,S ENST00000336577.3 MMP25 matrix metallopeptidase 25
chr16_+_3100250 1.58 0.34 8.56E-02 chr16:3100250-3100260 + CDS_or_noncoding_inner_exon,S
ENST00000336577.3/ENST00000325800.10
MMP25 matrix metallopeptidase 25
chr16_+_31885055 0.35 6.83 4.99E-02 chr16:31885055-31885248 + TSS,S ENST00000300870.8/ENST00000394846.2 ZNF267 zinc finger protein 267
chr16_+_33964124 -0.80 3.88 8.17E-02 chr16:33964124-33964144 + intergenic intergenic NA NA
chr16_+_50815174 -1.56 -0.40 4.95E-02 chr16:50815174-50815361 + CDS_or_noncoding_inner_exon,S
ENST00000427738.1/ENST00000311559.8/ENST00000540145.1/ENST00000398568.1
CYLD cylindromatosis (turban tumor syndrome)
chr16_+_56510326 -1.80 0.03 1.47E-02 chr16:56510326-56510425 + 3UTR_last_exon,S ENST00000336111.4/ENST00000540727.1 OGFOD1
2-oxoglutarate and iron-dependent oxygenase domain containing 1
chr16_+_56898873 -0.63 3.92 8.56E-02 chr16:56898873-56898892 + TSSregion500,S ENST00000438926.1/ENST00000262502.4 SLC12A3
solute carrier family 12 (sodium/chloride transporters), member 3
chr16_+_57702144 0.52 7.44 2.00E-02 chr16:57702144-57702322 + TSS,SENST00000333493.3/ENST00000327655.6/ENST00000450388.3
GPR97 G protein-coupled receptor 97
chr16_+_57713105 1.27 0.02 8.21E-02 chr16:57713105-57713271 + 5UTR_inner_exon,S ENST00000327655.6 GPR97 G protein-coupled
receptor 97
chr16_+_81685807 1.06 1.50 7.04E-02 chr16:81685807-81685971 + 5UTR_inner_exon,S ENST00000542097.1 CMIP c-Maf inducing protein
chr16_+_81812843 0.42 6.78 2.60E-02 chr16:81812843-81813003 + TSS,S ENST00000359376.2 PLCG2 phospholipase C, gamma 2
6767
Persson et al.
(phosphatidylinositol-specific)
chr16_+_84628259 0.57 2.65 6.78E-02 chr16:84628259-84628316 + CDS_or_noncoding_inner_intron,AS ENST00000262428.4 COTL1 coactosin-like 1
(Dictyostelium)
chr16_+_84872037 2.00 -0.12 5.87E-02 chr16:84872037-84872167 + 5UTR_inner_exon,S ENST00000262424.4 CRISPLD2
cysteine-rich secretory protein LCCL domain containing 2
chr16_+_88606427 -1.82 1.28 5.09E-02 chr16:88606427-88606507 + intergenic intergenic NA NA
chr16_+_88643712 1.34 0.02 3.51E-02 chr16:88643712-88643756 + CDS_or_noncoding_first_exon,S ENST00000545404.1 ZC3H18 zinc finger CCCH-type
containing 18
chr16_+_90023630 0.43 5.12 4.43E-02 chr16:90023630-90023756 + CDS_or_noncoding_inner_intron,S
ENST00000268676.7/ENST00000418391.2 DEF8
differentially expressed in FDCP 8 homolog (mouse)
chr16_+_90168904 0.74 2.17 7.98E-02 chr16:90168904-90168932 + intergenic intergenic NA NA
chr16_-_11650400 0.62 4.46 6.01E-02 chr16:11650400-11650597 - 5UTR_inner_exon,S
ENST00000339430.4/ENST00000413364.1/ENST00000381810.3
LITAF lipopolysaccharide-induced TNF factor
chr16_-_12875065 1.14 2.27 3.36E-02 chr16:12875065-12875261 - CDS_or_noncoding_inner_exon,S
ENST00000381774.3/ENST00000433677.2/ENST00000261660.4
CPPED1calcineurin-like phosphoesterase domain containing 1
chr16_-_2097788 -0.67 2.18 4.55E-02 chr16:2097788-2097919 - TSS,S ENST00000219066.1 NTHL1 nth endonuclease III-like 1 (E. coli)
chr16_-_28223170 0.34 7.29 4.94E-02 chr16:28223170-28223355 - TSS,S ENST00000304658.5 XPO6 exportin 6
chr16_-_2827235 -0.34 5.90 6.06E-02 chr16:2827235-2827321 - TSS,S ENST00000409906.3/ENST00000262306.7 TCEB2
transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)
chr16_-_3929873 0.82 2.62 3.29E-02 chr16:3929873-3930071 - TSSregion500,S ENST00000323508.4/ENST00000382070.2 CREBBP CREB binding protein
chr16_-_84623743 0.98 3.01 6.11E-02 chr16:84623743-84623880 - CDS_or_noncoding_inner_exon,S ENST00000262428.4 COTL1 coactosin-like 1
(Dictyostelium)
chr17_+_18111814 -0.90 1.08 8.95E-02 chr17:18111814-18111998 + CDS_or_noncoding_last_exon,S
ENST00000261650.5/ENST00000541285.1/ENST00000490106.1
ALKBH5 alkB, alkylation repair homolog 5 (E. coli)
chr17_+_27467469 0.94 1.45 2.88E-02 chr17:27467469-27467548 + TSSregion500,AS
ENST00000540575.1/ENST00000529799.1/ENST00000528564.1/ENST00000528322.1/ENST00000529651.1
MYO18A myosin XVIIIA
chr17_+_27872845 -1.66 -0.53 7.55E-02 chr17:27872845-27873038 + intergenic intergenic NA NA
6868
Persson et al.
chr17_+_29421882 0.48 4.13 6.30E-02 chr17:29421882-29422019 + TSS,S
ENST00000431387.3/ENST00000358273.4/ENST00000356175.3/ENST00000487476.1
NF1 neurofibromin 1
chr17_+_29844679 1.57 -0.19 5.48E-02 chr17:29844679-29844869 + CDS_or_noncoding_inner_exon,S
ENST00000325874.7/ENST00000394744.1 RAB11FIP4 RAB11 family interacting
protein 4 (class II)
chr17_+_30808489 -0.86 2.71 5.41E-02 chr17:30808489-30808581 + 3UTR_last_exon,S ENST00000261712.2 PSMD11proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
chr17_+_34401911 -1.78 1.79 2.66E-02 chr17:34401911-34402111 + intergenic intergenic NA NA
chr17_+_34430978 -1.18 2.57 5.36E-02 chr17:34430978-34430985 + TSSregion500,S ENST00000250151.3/ENST00000394495.1 CCL4 chemokine (C-C motif)
ligand 4
chr17_+_36884506 -1.55 -0.50 5.48E-02 chr17:36884506-36884655 + 3UTR_last_exon,S ENST00000325718.7 MLLT6
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
chr17_+_37054654 1.09 1.54 2.34E-02 chr17:37054654-37054736 + CDS_or_noncoding_inner_exon,S
ENST00000318008.5/ENST00000433206.2/ENST00000443937.2/ENST00000435347.3/ENST00000419929.1
LASP1 LIM and SH3 protein 1
chr17_+_37360783 -1.63 1.19 8.35E-02 chr17:37360783-37360909 + CDS_or_noncoding_last_exon,S ENST00000225430.4 RPL19 ribosomal protein L19
chr17_+_38375497 0.41 4.66 8.24E-02 chr17:38375497-38375692 + TSS,S
ENST00000323571.4/ENST00000536600.1/ENST00000394103.3/ENST00000494757.1
WIPF2 WAS/WASL interacting protein family, member 2
chr17_+_38512925 -1.01 2.25 7.43E-02 chr17:38512925-38513027 + CDS_or_noncoding_last_exon,S ENST00000319149.8 RARA retinoic acid receptor,
alpha
chr17_+_40610859 0.44 5.57 4.94E-02 chr17:40610859-40610959 + TSS,S
ENST00000546249.1/ENST00000393829.2/ENST00000343619.3/ENST00000264649.5/ENST00000537728.1/ENST00000544137.1
ATP6V0A1ATPase, H+ transporting, lysosomal V0 subunit a1
chr17_+_41338256 1.31 1.23 3.62E-02 chr17:41338256-41338433 + 5UTR_inner_exon,S ENST00000537493.1 NBR1 neighbor of BRCA1 gene
1
6969
Persson et al.
chr17_+_41571048 1.88 -0.55 1.67E-02 chr17:41571048-41571220 + CDS_or_noncoding_inner_exon,S
ENST00000540306.1/ENST00000262415.2 DHX8 DEAH (Asp-Glu-Ala-His)
box polypeptide 8
chr17_+_42398805 -1.45 0.95 6.96E-02 chr17:42398805-42398899 + CDS_or_noncoding_inner_exon,AS
ENST00000377095.4/ENST00000225308.8/ENST00000537904.1
SLC25A39 solute carrier family 25, member 39
chr17_+_42428911 0.83 2.40 4.89E-02 chr17:42428911-42429099 + CDS_or_noncoding_inner_exon,S
ENST00000053867.2/ENST00000393566.2/ENST00000357351.4
GRN granulin
chr17_+_43310591 0.78 1.62 7.82E-02 chr17:43310591-43310640 + CDS_or_noncoding_inner_exon,S
ENST00000331495.2/ENST00000328118.3 FMNL1 formin-like 1
chr17_+_45390148 -1.83 0.76 2.34E-02 chr17:45390148-45390334 + CDS_or_noncoding_inner_intron,S
ENST00000435993.2/ENST00000560629.1 ITGB3 Integrin beta
chr17_+_45734221 1.34 0.06 8.56E-02 chr17:45734221-45734401 + TSS,S ENST00000537679.1 KPNB1 karyopherin (importin) beta 1
chr17_+_4619258 0.70 3.82 5.22E-02 chr17:4619258-4619458 + CDS_or_noncoding_inner_exon,S
ENST00000381488.5/ENST00000381488.5/ENST00000269260.1/ENST00000269260.1/ENST00000346341.1/ENST00000412477.2/ENST00000412477.2
ARRB2 arrestin, beta 2
chr17_+_4619699 0.93 2.82 5.72E-02 chr17:4619699-4619877 + CDS_or_noncoding_inner_exon,S
ENST00000381488.5/ENST00000269260.1/ENST00000346341.1/ENST00000412477.2
ARRB2 arrestin, beta 2
chr17_+_4621547 0.97 3.44 8.19E-03 chr17:4621547-4621614 + CDS_or_noncoding_inner_exon,S
ENST00000381488.5/ENST00000269260.1/ENST00000346341.1/ENST00000412477.2
ARRB2 arrestin, beta 2
chr17_+_4623683 0.99 1.38 3.93E-02 chr17:4623683-4623742 + CDS_or_noncoding_inner_exon,S
ENST00000381488.5/ENST00000269260.1/ENST00000346341.1/ENST00000412477.2
ARRB2 arrestin, beta 2
7070
Persson et al.
chr17_+_47874095 1.07 0.15 9.33E-02 chr17:47874095-47874291 + 5UTR_inner_exon,S
ENST00000506533.1/ENST00000503935.2/ENST00000435742.2
KAT7 K(lysine) acetyltransferase 7
chr17_+_5284794 -1.06 1.63 3.81E-02 chr17:5284794-5284861 + CDS_or_noncoding_inner_exon,S
ENST00000408982.2/ENST00000262477.6/ENST00000537505.1/ENST00000546142.1/ENST00000341923.5
RABEP1 rabaptin, RAB GTPase binding effector protein 1
chr17_+_57842316 1.00 1.55 8.21E-02 chr17:57842316-57842469 + 5UTR_inner_exon,S ENST00000539763.1 VMP1 vacuole membrane
protein 1
chr17_+_65822192 1.04 1.85 3.19E-02 chr17:65822192-65822354 + TSS,S ENST00000544778.1 BPTF bromodomain PHD finger transcription factor
chr17_+_66287449 0.60 3.17 6.65E-02 chr17:66287449-66287530 + 5UTR_first_intron,S ENST00000452479.1 ARSG arylsulfatase G
chr17_+_67498362 0.74 3.70 4.56E-02 chr17:67498362-67498560 + CDS_or_noncoding_first_intron,S ENST00000359094.2 MAP2K6 mitogen-activated
protein kinase kinase 6
chr17_+_72322334 -1.26 1.47 8.31E-03 chr17:72322334-72322401 + TSS,S
ENST00000389916.4/ENST00000551294.1/ENST00000551017.1/ENST00000359939.6/ENST00000547389.1
KIF19 kinesin family member 19
chr17_+_72480148 0.56 2.77 8.21E-02 chr17:72480148-72480342 + CDS_or_noncoding_last_exon,S
ENST00000361933.2/ENST00000360141.3/ENST00000392625.3/ENST00000310828.5
CD300A CD300a molecule
chr17_+_72764279 0.97 1.44 8.21E-02 chr17:72764279-72764345 + CDS_or_noncoding_inner_exon,S ENST00000262613.4 SLC9A3R1
solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1
chr17_+_75138700 1.20 0.20 5.52E-02 chr17:75138700-75138835 + 5UTR_inner_exon,S
ENST00000392476.2/ENST00000443798.1/ENST00000436233.1/ENST00000430767.1/ENST00000413679.2
SEC14L1 SEC14-like 1 (S. cerevisiae)
7171
Persson et al.
chr17_+_75190751 1.18 0.80 8.21E-02 chr17:75190751-75190940 + CDS_or_noncoding_inner_exon,S
ENST00000392476.2/ENST00000443798.1/ENST00000436233.1/ENST00000430767.1/ENST00000413679.2/ENST00000431431.1
SEC14L1 SEC14-like 1 (S. cerevisiae)
chr17_+_76374689 0.37 5.93 6.05E-02 chr17:76374689-76374847 + TSS,S ENST00000262764.5/ENST00000329897.7 PGS1 phosphatidylglycerophos
phate synthase 1
chr17_+_78261646 2.36 0.19 2.85E-02 chr17:78261646-78261713 + TSSregion500,S ENST00000559070.1 RNF213 ring finger protein 213chr17_+_8316388 0.68 7.17 4.38E-04 chr17:8316388-8316578 + intergenic intergenic NA NA
chr17_-_2203453 1.39 -0.17 8.60E-02 chr17:2203453-2203633 - CDS_or_noncoding_inner_exon,S
ENST00000544865.1/ENST00000263073.4 SMG6
smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
chr17_-_2295637 1.20 0.19 4.95E-02 chr17:2295637-2295724 - CDS_or_noncoding_inner_intron,S
ENST00000174618.4/ENST00000404961.2 MNT MNT, MAX dimerization
protein
chr17_-_27901164 -1.76 -0.73 8.17E-02 chr17:27901164-27901323 - CDS_or_noncoding_last_exon,S ENST00000473217.1 GIT1
G protein-coupled receptor kinase interacting ArfGAP 1
chr17_-_27977669 2.05 -0.44 2.53E-02 chr17:27977669-27977844 - CDS_or_noncoding_inner_exon,S
ENST00000269033.3/ENST00000540801.1/ENST00000394848.1
SSH2 slingshot homolog 2 (Drosophila)
chr17_-_28088305 0.41 7.91 5.52E-02 chr17:28088305-28088499 - TSSregion500,S ENST00000324677.6 SSH2 slingshot homolog 2 (Drosophila)
chr17_-_29641018 0.31 9.79 8.56E-02 chr17:29641018-29641142 - TSS,S ENST00000330927.3/ENST00000544462.1 EVI2B ecotropic viral integration
site 2B
chr17_-_36981460 0.38 5.73 7.85E-02 chr17:36981460-36981640 - TSS,S ENST00000225428.3/ENST00000536127.1 CWC25
CWC25 spliceosome-associated protein homolog (S. cerevisiae)
chr17_-_37915713 -1.75 0.47 3.22E-02 chr17:37915713-37915906 - 3UTR_last_exon,S ENST00000488188.1 IKZF3 IKAROS family zinc finger 3 (Aiolos)
chr17_-_38474193 0.99 0.78 5.01E-02 chr17:38474193-38474374 - TSSregion500,AS ENST00000425707.2/ENST00000394089.1 RARA retinoic acid receptor,
alpha
chr17_-_40975801 1.33 0.88 3.36E-02 chr17:40975801-40975902 - 5UTR_inner_exon,S
ENST00000361523.3/ENST00000438274.2/ENST00000543382.1
BECN1 beclin 1, autophagy related
chr17_-_43482339 0.97 0.93 7.36E-02 chr17:43482339-43482485 - TSSregion500,S ENST00000532667.1 ARHGAP27 Rho GTPase activating protein 27
chr17_-_44249394 1.09 1.50 3.57E-02 chr17:44249394-44249584 - TSSregion500,S ENST00000432791.1 KIAA1267 NA
7272
Persson et al.
chr17_-_49198086 0.52 5.78 1.15E-02 chr17:49198086-49198263 - TSS,S
ENST00000262013.7/ENST00000505279.1/ENST00000357122.4/ENST00000546269.1
SPAG9 sperm associated antigen 9
chr17_-_5486022 0.70 2.63 3.41E-02 chr17:5486022-5486175 - CDS_or_noncoding_inner_exon,S
ENST00000544378.1/ENST00000262467.4/ENST00000269280.3/ENST00000354411.2/ENST00000345221.3
NLRP1 NLR family, pyrin domain containing 1
chr17_-_54991171 1.72 0.18 4.17E-02 chr17:54991171-54991233 - CDS_or_noncoding_first_exon,S
ENST00000316881.3/ENST00000537230.1 TRIM25 tripartite motif containing
25
chr17_-_56081124 -1.27 1.55 2.00E-02 chr17:56081124-56081282 - 3UTR_last_exon,S ENST00000258962.3 SRSF1 serine/arginine-rich splicing factor 1
chr17_-_58469333 0.44 5.71 4.15E-02 chr17:58469333-58469508 - TSS,S ENST00000393003.2 USP32 ubiquitin specific peptidase 32
chr17_-_62500886 0.73 5.13 5.67E-02 chr17:62500886-62500966 - CDS_or_noncoding_inner_exon,S
ENST00000540698.1/ENST00000450599.1/ENST00000225792.4
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5
chr17_-_73842724 0.75 3.60 1.55E-02 chr17:73842724-73842872 - CDS_or_noncoding_inner_exon,S ENST00000431190.1 WBP2 WW domain binding
protein 2
chr17_-_73843917 0.63 2.83 6.01E-02 chr17:73843917-73844003 - CDS_or_noncoding_inner_exon,S
ENST00000254806.3/ENST00000344296.4/ENST00000416574.2
WBP2 WW domain binding protein 2
chr17_-_76698235 1.51 -0.03 4.95E-02 chr17:76698235-76698326 - 5UTR_inner_exon,S ENST00000392453.3 CYTH1 cytohesin 1
chr17_-_76921332 0.46 7.27 6.51E-02 chr17:76921332-76921501 - TSS,S ENST00000262768.5 TIMP2 TIMP metallopeptidase inhibitor 2
chr17_-_7760495 -0.45 3.71 5.38E-02 chr17:7760495-7760593 - CDS_or_noncoding_first_exon,S ENST00000333775.4 LSMD1 LSM domain containing
1
chr17_-_79134150 0.65 4.45 4.84E-02 chr17:79134150-79134279 - CDS_or_noncoding_first_intron,S
ENST00000326724.4/ENST00000374792.1 AATK apoptosis-associated
tyrosine kinase
chr17_-_8868952 0.28 7.24 6.58E-02 chr17:8868952-8869080 - TSS,S ENST00000447110.1 PIK3R5phosphoinositide-3-kinase, regulatory subunit 5
chr18_+_2655680 0.56 8.26 2.52E-03 chr18:2655680-2655741 + TSSregion500,S ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2655873 0.40 5.72 5.56E-02 chr18:2655873-2655931 + TSS,S ENST00000261598.8/ENST00000320876.5 SMCHD1 structural maintenance
of chromosomes flexible
7373
Persson et al.
hinge domain containing 1
chr18_+_2656007 1.70 1.47 9.78E-03 chr18:2656007-2656050 + TSSregion500,S ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2673977 1.19 2.25 2.50E-03 chr18:2673977-2674175 + CDS_or_noncoding_inner_exon,S
ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2688384 0.89 1.30 9.92E-02 chr18:2688384-2688481 + CDS_or_noncoding_inner_exon,S
ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_3253225 1.14 4.50 7.16E-04 chr18:3253225-3253251 + 5UTR_inner_exon,S
ENST00000217652.3/ENST00000536605.1 MYL12A
myosin, light chain 12A, regulatory, non-sarcomeric
chr18_+_3603609 1.58 -0.33 6.46E-02 chr18:3603609-3603737 + TSS,S ENST00000445581.2 AP002478.2 NA
chr18_+_48605952 -1.73 -0.25 6.78E-02 chr18:48605952-48606117 + 3UTR_last_exon,SENST00000544926.1/ENST00000342988.3/ENST00000398417.1
SMAD4 SMAD family member 4
chr18_+_59894532 1.45 -0.13 4.15E-02 chr18:59894532-59894695 + CDS_or_noncoding_inner_exon,S
ENST00000398130.2/ENST00000256858.5 KIAA1468 KIAA1468
chr18_+_77170924 1.05 0.80 9.74E-02 chr18:77170924-77171093 + 5UTR_first_intron,S
ENST00000397790.2/ENST00000545796.1 NFATC1
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
chr18_-_9570246 1.11 0.63 5.34E-02 chr18:9570246-9570445 - CDS_or_noncoding_inner_exon,S
ENST00000400556.3/ENST00000400555.3/ENST00000285124.7
PPP4R1 protein phosphatase 4, regulatory subunit 1
chr19_+_11435147 1.45 -0.06 4.15E-02 chr19:11435147-11435341 + 3UTR_last_exon,AS ENST00000222120.2 RAB3D RAB3D, member RAS
oncogene familychr19_+_12902551 1.04 3.39 2.75E-02 chr19:12902551-12902614 + TSSregion500,S ENST00000302754.4 JUNB jun B proto-oncogene
chr19_+_13054688 -1.30 1.65 3.52E-02 chr19:13054688-13054764 + CDS_or_noncoding_last_exon,S
ENST00000316448.4/ENST00000539083.1 CALR calreticulin
chr19_+_15751541 0.58 4.76 5.06E-02 chr19:15751541-15751731 + TSS,S ENST00000538865.1/ENST00000221307.6 CYP4F3
cytochrome P450, family 4, subfamily F, polypeptide 3
chr19_+_16244231 -0.74 3.23 2.67E-02 chr19:16244231-16244280 + 3UTR_last_exon,S ENST00000300935.2 RAB8A RAB8A, member RAS oncogene family
chr19_+_16437841 0.75 2.49 6.62E-02 chr19:16437841-16437881 + CDS_or_noncoding_last_exon,S ENST00000248071.4 KLF2 Kruppel-like factor 2
(lung)
7474
Persson et al.
chr19_+_18226300 -1.06 2.72 1.32E-02 chr19:18226300-18226313 + CDS_or_noncoding_inner_intron,S ENST00000262811.4 MAST3
microtubule associated serine/threonine kinase 3
chr19_+_19627009 -0.35 6.35 5.37E-02 chr19:19627009-19627117 + TSS,S
ENST00000555938.1/ENST00000553705.1/ENST00000503283.1/ENST00000512771.1/ENST00000511584.1/ENST00000428459.2/ENST00000502506.1/ENST00000511180.1
CTC-260F20.3 NA
chr19_+_2282242 0.84 1.15 8.60E-02 chr19:2282242-2282397 + TSSregion500,AS ENST00000342063.2 C19ORF35 NA
chr19_+_33203301 -0.91 1.85 4.34E-02 chr19:33203301-33203314 + 3UTR_last_exon,S ENST00000397061.2 NUDT19nudix (nucleoside diphosphate linked moiety X)-type motif 19
chr19_+_34663555 0.71 2.81 3.36E-02 chr19:34663555-34663567 + CDS_or_noncoding_first_exon,S
ENST00000433627.3/ENST00000544216.2/ENST00000540746.1
LSM14ALSM14A, SCD6 homolog A (S. cerevisiae)
chr19_+_34685355 1.29 0.87 2.90E-02 chr19:34685355-34685494 + CDS_or_noncoding_inner_exon,S
ENST00000433627.3/ENST00000544216.2/ENST00000540746.1
LSM14ALSM14A, SCD6 homolog A (S. cerevisiae)
chr19_+_34718470 -0.81 4.38 3.50E-02 chr19:34718470-34718669 + 3UTR_last_exon,SENST00000433627.3/ENST00000544216.2/ENST00000540746.1
LSM14ALSM14A, SCD6 homolog A (S. cerevisiae)
chr19_+_3577295 1.65 1.22 4.71E-03 chr19:3577295-3577415 + CDS_or_noncoding_inner_intron,S
ENST00000333651.6/ENST00000402569.2/ENST00000488973.1/ENST00000487894.1
HMG20B high mobility group 20B
chr19_+_36395006 -1.68 0.28 3.33E-02 chr19:36395006-36395133 + CDS_or_noncoding_last_exon,S
ENST00000246551.3/ENST00000437550.1 HCST hematopoietic cell signal
transducer
chr19_+_39898433 0.94 2.20 3.86E-02 chr19:39898433-39898475 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36
zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39898497 0.95 4.75 5.75E-03 chr19:39898497-39898620 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36
zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39898703 0.68 4.69 6.38E-02 chr19:39898703-39898792 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36
zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39898819 1.51 1.93 9.88E-03 chr19:39898819-39898828 + CDS_or_noncodin ENST00000248673.3 ZFP36 zinc finger protein 36,
7575
Persson et al.
g_last_exon,S C3H type, homolog (mouse)
chr19_+_39943972 0.78 2.87 6.65E-02 chr19:39943972-39944141 + CDS_or_noncoding_inner_exon,S
ENST00000402194.2/ENST00000432763.2/ENST00000378524.5/ENST00000378524.5/ENST00000359191.5
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae)
chr19_+_41089537 1.38 0.39 6.73E-02 chr19:41089537-41089590 + CDS_or_noncoding_inner_exon,S
ENST00000291842.4/ENST00000446701.2 SHKBP1 SH3KBP1 binding
protein 1
chr19_+_41812977 -1.58 1.71 3.45E-03 chr19:41812977-41813005 + 3UTR_last_exon,SENST00000352456.2/ENST00000392006.2/ENST00000378215.3
HNRNPUL1heterogeneous nuclear ribonucleoprotein U-like 1
chr19_+_42300425 0.59 7.64 6.73E-03 chr19:42300425-42300581 + TSS,S
ENST00000389667.3/ENST00000221999.4/ENST00000415495.1/ENST00000344550.4
CEACAM3carcinoembryonic antigen-related cell adhesion molecule 3
chr19_+_45251849 1.63 -0.62 5.52E-02 chr19:45251849-45251853 + TSSregion500,S ENST00000164227.5 BCL3 B-cell CLL/lymphoma 3
chr19_+_45542746 0.80 2.69 6.46E-02 chr19:45542746-45542832 + TSS,S ENST00000544944.1 CLASRPCLK4-associating serine/arginine rich protein
chr19_+_46029415 2.09 -0.88 6.10E-02 chr19:46029415-46029447 + CDS_or_noncoding_last_exon,S ENST00000245932.5 VASP vasodilator-stimulated
phosphoprotein
chr19_+_47823067 1.06 1.89 6.01E-02 chr19:47823067-47823117 + CDS_or_noncoding_last_exon,S ENST00000355085.2 C5AR1 complement component
5a receptor 1
chr19_+_47823182 2.52 -0.47 2.61E-02 chr19:47823182-47823190 + CDS_or_noncoding_last_exon,S ENST00000355085.2 C5AR1 complement component
5a receptor 1
chr19_+_47823341 1.09 0.80 8.56E-02 chr19:47823341-47823372 + CDS_or_noncoding_last_exon,S ENST00000355085.2 C5AR1 complement component
5a receptor 1
chr19_+_48250218 1.81 0.01 3.57E-02 chr19:48250218-48250230 + CDS_or_noncoding_inner_exon,S
ENST00000246802.4/ENST00000325566.11/ENST00000446535.2
GLTSCR2 glioma tumor suppressor candidate region gene 2
chr19_+_50332219 1.20 1.33 2.28E-02 chr19:50332219-50332298 + CDS_or_noncoding_inner_exon,S
ENST00000312881.5/ENST00000312865.5/ENST00000377077.4/ENST00000355584.3/ENST00000456294.2/ENST00000542221.1/ENST00000544580.1
MED25 mediator complex subunit 25
7676
Persson et al.
chr19_+_50985483 1.19 0.24 5.42E-02 chr19:50985483-50985561 + CDS_or_noncoding_inner_exon,S ENST00000376920.3 C19ORF63 NA
chr19_+_55085882 0.98 2.13 4.02E-02 chr19:55085882-55085987 + CDS_or_noncoding_inner_exon,S
ENST00000439534.1/ENST00000251377.3/ENST00000391738.3/ENST00000251376.3/ENST00000391737.1/ENST00000495786.1
LILRA2
leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2
chr19_+_7437754 1.51 -0.26 5.17E-02 chr19:7437754-7437912 + intergenic intergenic NA NAchr19_+_7741934 0.57 4.35 4.76E-02 chr19:7741934-7742008 + TSS,S ENST00000333598.2 C19ORF59 NA
chr19_-_1127629 1.61 0.02 6.36E-02 chr19:1127629-1127777 - CDS_or_noncoding_inner_exon,S
ENST00000438103.1/ENST00000361757.2/ENST00000250872.3
SBNO2 strawberry notch homolog 2 (Drosophila)
chr19_-_11446162 1.20 -0.14 6.41E-02 chr19:11446162-11446230 - CDS_or_noncoding_inner_exon,S ENST00000222120.2 RAB3D RAB3D, member RAS
oncogene family
chr19_-_16535924 1.70 0.01 2.41E-02 chr19:16535924-16536104 - CDS_or_noncoding_inner_exon,S
ENST00000455140.1/ENST00000248070.5/ENST00000535753.1
EPS15L1epidermal growth factor receptor pathway substrate 15-like 1
chr19_-_18390851 -1.03 4.79 6.61E-02 chr19:18390851-18390917 - 3UTR_first_exon,S ENST00000252818.3 JUND jun D proto-oncogene
chr19_-_18632817 0.46 6.25 4.97E-02 chr19:18632817-18632938 - TSS,S ENST00000262809.3 ELL elongation factor RNA polymerase II
chr19_-_19754354 0.35 7.15 4.97E-02 chr19:19754354-19754491 - TSS,S ENST00000203556.3/ENST00000445806.2 GMIP GEM interacting protein
chr19_-_2078564 1.31 0.30 8.01E-02 chr19:2078564-2078670 - 5UTR_inner_exon,S ENST00000357066.2 MOB3A MOB kinase activator 3A
chr19_-_2085245 0.31 7.46 8.84E-02 chr19:2085245-2085433 - 5UTR_inner_exon,S ENST00000357066.2 MOB3A MOB kinase activator 3A
chr19_-_21751973 1.10 4.01 4.22E-02 chr19:21751973-21752084 - intergenic intergenic NA NAchr19_-_2950620 1.12 0.18 6.99E-02 chr19:2950620-2950696 - intergenic intergenic NA NA
chr19_-_3053158 -1.35 0.35 5.98E-02 chr19:3053158-3053209 - 3UTR_last_exon,S ENST00000327141.3/ENST00000221561.7 AES amino-terminal enhancer
of split
chr19_-_39322000 1.87 -0.16 7.73E-02 chr19:39322000-39322159 - CDS_or_noncoding_inner_exon,S ENST00000221418.3 ECH1 enoyl CoA hydratase 1,
peroxisomal
chr19_-_3984160 1.04 3.66 6.01E-02 chr19:3984160-3984353 - CDS_or_noncoding_inner_exon,S
ENST00000543343.1/ENST00000309311.5 EEF2 eukaryotic translation
elongation factor 2
chr19_-_42133332 0.56 6.73 2.34E-02 chr19:42133332-42133491 - TSS,S ENST00000221954.2/ENST00000472081.1 CEACAM4
carcinoembryonic antigen-related cell adhesion molecule 4
7777
Persson et al.
chr19_-_42305662 0.96 1.83 8.21E-02 chr19:42305662-42305842 - CDS_or_noncoding_inner_intron,AS
ENST00000357396.3/ENST00000389667.3/ENST00000221999.4/ENST00000415495.1/ENST00000344550.4
CEACAM3carcinoembryonic antigen-related cell adhesion molecule 3
chr19_-_4539957 0.46 7.19 3.29E-02 chr19:4539957-4540131 - TSS,S ENST00000306390.4/ENST00000538589.1 LRG1 leucine-rich alpha-2-
glycoprotein 1
chr19_-_52250183 1.43 1.59 2.90E-02 chr19:52250183-52250252 - 5UTR_last_exon,S ENST00000304748.3 FPR1 formyl peptide receptor 1
chr19_-_54824359 0.45 6.35 7.32E-02 chr19:54824359-54824495 - TSS,S
ENST00000301219.3/ENST00000446712.3/ENST00000432233.3/ENST00000489504.1/ENST00000486742.1
LILRA5
chr19_-_59065458 1.35 1.62 2.00E-02 chr19:59065458-59065616 - 5UTR_inner_exon,S ENST00000312547.1 CHMP2A charged multivesicular
body protein 2A
chr19_-_8615039 1.79 -0.78 7.43E-02 chr19:8615039-8615044 - CDS_or_noncoding_inner_exon,S
ENST00000305795.6/ENST00000338257.6 MYO1F myosin IF
chr1_+_10093203 0.79 1.28 8.16E-02 chr1:10093203-10093269 + TSSregion500,S
ENST00000343090.6/ENST00000377153.1/ENST00000253251.8/ENST00000377157.3
UBE4B ubiquitination factor E4B
chr1_+_10270525 0.47 4.58 6.21E-02 chr1:10270525-10270707 + TSSregion500,SENST00000355249.4/ENST00000377093.4/ENST00000263934.6
KIF1B kinesin family member 1B
chr1_+_10738533 1.70 0.31 3.71E-02 chr1:10738533-10738547 + CDS_or_noncoding_first_intron,AS ENST00000478728.2 CASZ1 castor zinc finger 1
chr1_+_110168930 2.49 -0.40 9.78E-03 chr1:110168930-110169018 + TSSregion500,S ENST00000534144.1 AMPD2adenosine monophosphate deaminase 2
chr1_+_116519121 0.70 2.26 6.70E-02 chr1:116519121-116519164 + TSSregion500,S ENST00000369503.4/ENST00000369502.1 SLC22A15 solute carrier family 22,
member 15
chr1_+_118167048 -0.90 4.47 9.97E-02 chr1:118167048-118167197 + 3UTR_last_exon,S ENST00000369448.3 FAM46C family with sequence similarity 46, member C
chr1_+_118167622 -1.03 4.60 5.52E-02 chr1:118167622-118167741 + 3UTR_last_exon,S ENST00000369448.3 FAM46C family with sequence similarity 46, member C
7878
Persson et al.
chr1_+_12252932 1.07 2.65 4.99E-02 chr1:12252932-12253012 + CDS_or_noncoding_inner_exon,S
ENST00000400863.3/ENST00000376259.3/ENST00000492361.1
TNFRSF1Btumor necrosis factor receptor superfamily, member 1B
chr1_+_145438929 1.59 0.46 6.39E-02 chr1:145438929-145438932 + TSSregion500,S ENST00000425134.1 TXNIP
cDNA FLJ61424, highly similar to Homo sapiens thioredoxin interacting protein (TXNIP), mRNA
chr1_+_145440653 0.91 3.61 8.59E-02 chr1:145440653-145440758 + TSSregion500,S ENST00000486597.1 TXNIP
cDNA FLJ61424, highly similar to Homo sapiens thioredoxin interacting protein (TXNIP), mRNA
chr1_+_15045198 -1.45 -0.15 7.85E-02 chr1:15045198-15045205 + CDS_or_noncoding_first_intron,S
ENST00000376030.2/ENST00000422387.2/ENST00000491547.1
KAZN kazrin, periplakin interacting protein
chr1_+_151584479 0.43 6.03 2.51E-02 chr1:151584479-151584677 + TSS,S
ENST00000368841.2/ENST00000458013.2/ENST00000368843.3/ENST00000504583.1
SNX27 sorting nexin family member 27
chr1_+_153963219 -0.41 10.70 6.06E-02 chr1:153963219-153963285 + TSS,S
ENST00000368567.4/ENST00000392558.4/ENST00000493224.1/ENST00000477151.1
RPS27 ribosomal protein S27
chr1_+_154378054 0.50 4.27 2.90E-02 chr1:154378054-154378090 + TSSregion500,SENST00000368485.3/ENST00000344086.4/ENST00000512471.1
IL6R interleukin 6 receptor
chr1_+_154401669 1.73 -0.22 7.33E-02 chr1:154401669-154401846 + TSS,S ENST00000476006.1 IL6R interleukin 6 receptor
chr1_+_156783987 -1.44 0.41 5.72E-02 chr1:156783987-156784186 + TSSregion500,AS ENST00000468744.1 SH2D2A SH2 domain containing 2A
chr1_+_15753637 0.92 1.82 3.50E-02 chr1:15753637-15753759 + CDS_or_noncoding_inner_exon,S
ENST00000375980.4/ENST00000375975.4/ENST00000445566.1
EFHD2 EF-hand domain family, member D2
chr1_+_158813119 0.72 3.80 1.27E-02 chr1:158813119-158813171 + CDS_or_noncoding_inner_exon,S ENST00000368141.4 MNDA myeloid cell nuclear
differentiation antigen
chr1_+_161480588 0.76 3.07 3.36E-02 chr1:161480588-161480680 + CDS_or_noncoding_inner_exon,S
ENST00000367972.4/ENST00000271450.6/ENST00000467525.1
FCGR2AFc fragment of IgG, low affinity IIa, receptor (CD32)
7979
Persson et al.
chr1_+_167190109 0.46 3.83 6.41E-02 chr1:167190109-167190173 + TSS,S
ENST00000559038.1/ENST00000557909.1/ENST00000558944.1/ENST00000442313.1/ENST00000452019.1/ENST00000429375.2/ENST00000492850.1/ENST00000367865.1/ENST00000271411.4/ENST00000420254.3
POU2F1 POU class 2 homeobox 1
chr1_+_168213964 -1.94 -0.24 4.15E-02 chr1:168213964-168214114 + intergenic intergenic NA NAchr1_+_168220751 -1.48 -0.46 8.36E-02 chr1:168220751-168220948 + intergenic intergenic NA NA
chr1_+_171558464 1.10 0.99 5.75E-02 chr1:171558464-171558473 + CDS_or_noncoding_inner_intron,S
ENST00000392078.3/ENST00000451306.2/ENST00000392080.3/ENST00000498596.1
PRRC2C proline-rich coiled-coil 2C
chr1_+_17634622 0.52 6.58 5.01E-02 chr1:17634622-17634774 + TSS,SENST00000375453.1/ENST00000358829.3/ENST00000375448.4
PADI4 peptidyl arginine deiminase, type IV
chr1_+_17668433 1.59 0.78 2.52E-03 chr1:17668433-17668588 + CDS_or_noncoding_inner_exon,S ENST00000375448.4 PADI4 peptidyl arginine
deiminase, type IV
chr1_+_192127466 0.51 9.85 4.95E-02 chr1:192127466-192127654 + TSS,SENST00000367460.3/ENST00000481707.1/ENST00000492967.1
RGS18 regulator of G-protein signaling 18
chr1_+_192779307 0.73 3.46 5.71E-02 chr1:192779307-192779360 + CDS_or_noncoding_inner_exon,S
ENST00000235382.5/ENST00000464302.1/ENST00000487236.1
RGS2 regulator of G-protein signaling 2, 24kDa
chr1_+_192780102 0.68 3.72 9.38E-02 chr1:192780102-192780239 + CDS_or_noncoding_inner_exon,S ENST00000235382.5 RGS2 regulator of G-protein
signaling 2, 24kDa
chr1_+_192780771 1.40 0.72 5.83E-02 chr1:192780771-192780786 + 3UTR_last_exon,S ENST00000235382.5 RGS2 regulator of G-protein signaling 2, 24kDa
chr1_+_203276397 1.09 2.17 8.17E-03 chr1:203276397-203276438 + CDS_or_noncoding_inner_exon,S ENST00000475157.1 BTG2 BTG family, member 2
chr1_+_204524120 -1.49 0.16 9.38E-02 chr1:204524120-204524273 + 3UTR_last_exon,S ENST00000367182.3 MDM4 Mdm4 p53 binding protein homolog (mouse)
8080
Persson et al.
chr1_+_207495651 1.73 -0.07 9.73E-02 chr1:207495651-207495658 + CDS_or_noncoding_first_intron,S
ENST00000367064.3/ENST00000367063.2/ENST00000391921.4/ENST00000367067.4/ENST00000536840.1/ENST00000314754.8/ENST00000367065.5/ENST00000391920.4/ENST00000367062.4/ENST00000482390.2/ENST00000488171.1
CD55
CD55 molecule, decay accelerating factor for complement (Cromer blood group)
chr1_+_207495690 1.13 4.16 1.94E-02 chr1:207495690-207495781 + CDS_or_noncoding_inner_exon,S
ENST00000367064.3/ENST00000367063.2/ENST00000391921.4/ENST00000367067.4/ENST00000536840.1/ENST00000314754.8/ENST00000367065.5/ENST00000391920.4/ENST00000367062.4/ENST00000482390.2/ENST00000343420.6/ENST00000488171.1
CD55
CD55 molecule, decay accelerating factor for complement (Cromer blood group)
chr1_+_207669486 0.50 4.93 5.54E-02 chr1:207669486-207669633 + TSS,S
ENST00000367052.1/ENST00000367053.1/ENST00000367051.1/ENST00000400960.2/ENST00000534202.1/ENST00000367049.4/ENST00000367050.4/ENST00000530487.1
CR1complement component (3b/4b) receptor 1 (Knops blood group)
chr1_+_209849199 1.52 3.44 2.63E-02 chr1:209849199-209849309 + CDS_or_noncoding_last_exon,S ENST00000367029.4 G0S2 G0/G1switch 2
chr1_+_209932409 1.67 -0.24 2.61E-02 chr1:209932409-209932442 + 5UTR_inner_exon,S
ENST00000400959.3/ENST00000367025.3/ENST00000478359.1/ENST00000479796.1/ENST00000458110.1/ENST00000367026.3/ENST00000367024.1
TRAF3IP3 TRAF3 interacting protein 3
8181
Persson et al.
chr1_+_217090431 -1.45 0.57 2.24E-02 chr1:217090431-217090442 + 5UTR_first_intron,AS
ENST00000361395.2/ENST00000366938.2 ESRRG estrogen-related
receptor gamma
chr1_+_21835839 0.57 6.26 6.76E-02 chr1:21835839-21835964 + TSS,S
ENST00000539907.1/ENST00000540617.1/ENST00000374840.3/ENST00000468526.1
ALPL alkaline phosphatase, liver/bone/kidney
chr1_+_21894589 1.43 0.68 2.51E-02 chr1:21894589-21894700 + CDS_or_noncoding_inner_exon,S
ENST00000539907.1/ENST00000540617.1/ENST00000374840.3/ENST00000374832.1/ENST00000425315.2
ALPL alkaline phosphatase, liver/bone/kidney
chr1_+_220960195 0.76 4.65 1.02E-02 chr1:220960195-220960282 + TSSregion500,S ENST00000366910.5 MOSC1 NAchr1_+_228333714 1.51 -0.26 5.69E-02 chr1:228333714-228333737 + TSS,S ENST00000470155.1 GUK1 guanylate kinase 1chr1_+_228675040 -0.41 6.51 7.81E-02 chr1:228675040-228675163 + TSSregion500,S ENST00000305943.7 RNF187 ring finger protein 187
chr1_+_231762403 0.74 3.52 1.24E-02 chr1:231762403-231762591 + TSS,S
ENST00000535944.1/ENST00000539444.1/ENST00000295051.7/ENST00000366633.3/ENST00000366636.4/ENST00000535983.1/ENST00000537876.1/ENST00000366637.3/ENST00000366638.5/ENST00000532576.2/ENST00000439617.2/ENST00000317586.4
DISC1 disrupted in schizophrenia 1
chr1_+_245724091 -1.04 2.01 4.82E-02 chr1:245724091-245724103 + CDS_or_noncoding_inner_intron,S
ENST00000407071.2/ENST00000366518.3/ENST00000413001.1
KIF26B kinesin family member 26B
chr1_+_246729735 0.55 2.58 7.83E-02 chr1:246729735-246729760 + TSS,S ENST00000366513.4/ENST00000483271.1 CNST consortin, connexin
sorting protein
chr1_+_24999037 -1.79 -0.51 5.41E-02 chr1:24999037-24999154 + 3UTR_last_exon,SENST00000323848.8/ENST00000447431.2/ENST00000374389.3
SRRM1 serine/arginine repetitive matrix 1
chr1_+_27023388 0.83 1.43 6.10E-02 chr1:27023388-27023511 + CDS_or_noncoding_first_exon,S
ENST00000324856.7/ENST00000457599.2 ARID1A AT rich interactive
domain 1A (SWI-like)
8282
Persson et al.
chr1_+_27153156 0.37 7.86 4.15E-02 chr1:27153156-27153248 + TSS,S ENST00000374142.3 ZDHHC18 zinc finger, DHHC-type containing 18
chr1_+_27153466 0.75 3.40 1.67E-02 chr1:27153466-27153577 + CDS_or_noncoding_first_exon,S ENST00000374142.3 ZDHHC18 zinc finger, DHHC-type
containing 18
chr1_+_27155427 0.86 1.93 9.36E-02 chr1:27155427-27155490 + CDS_or_noncoding_first_intron,S ENST00000374142.3 ZDHHC18 zinc finger, DHHC-type
containing 18chr1_+_28203084 0.87 3.13 4.95E-02 chr1:28203084-28203220 + TSS,S ENST00000482828.1 C1ORF38 NA
chr1_+_28293927 1.38 -0.03 6.02E-02 chr1:28293927-28293989 + 3UTR_last_exon,S ENST00000373884.5 XKR8XK, Kell blood group complex subunit-related family, member 8
chr1_+_29444273 -1.44 2.25 1.49E-02 chr1:29444273-29444361 + CDS_or_noncoding_last_exon,S ENST00000460378.1 EPB41
erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)
chr1_+_29445644 -0.99 1.67 8.21E-02 chr1:29445644-29445798 + CDS_or_noncoding_last_exon,S ENST00000460378.1 EPB41
erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)
chr1_+_36636561 1.44 0.50 5.90E-02 chr1:36636561-36636691 + 5UTR_inner_exon,S
ENST00000429533.2/ENST00000530729.1 MAP7D1 MAP7 domain containing
1
chr1_+_36724949 1.65 -0.04 5.93E-02 chr1:36724949-36725057 + 5UTR_inner_exon,S
ENST00000354618.5/ENST00000469141.2/ENST00000478853.1
THRAP3thyroid hormone receptor associated protein 3
chr1_+_37070847 -1.09 0.85 8.35E-02 chr1:37070847-37070859 + intergenic intergenic NA NA
chr1_+_40524996 1.30 1.33 1.62E-02 chr1:40524996-40525106 + 5UTR_inner_exon,S
ENST00000372797.3/ENST00000372802.1/ENST00000449311.1/ENST00000421589.1/ENST00000414893.1/ENST00000414281.1/ENST00000420216.1/ENST00000372792.2/ENST00000538246.1/ENST00000372798.1/ENST00000340450.3/ENST00000372805.3/ENST00000435719.1/ENST00000372794.2/ENST00000427843.1/ENST00000417287.1/ENST00000424977.1/ENST00000446031.1
CAP1CAP, adenylate cyclase-associated protein 1 (yeast)
chr1_+_40840055 1.43 1.48 2.34E-02 chr1:40840055-40840132 + TSSregion500,S ENST00000372708.1 SMAP2 small ArfGAP2
8383
Persson et al.
chr1_+_41157630 1.06 2.68 9.78E-03 chr1:41157630-41157686 + TSS,S ENST00000534399.1/ENST00000372653.1 NFYC nuclear transcription
factor Y, gamma
chr1_+_76540373 0.68 3.06 8.73E-02 chr1:76540373-76540543 + TSS,S ENST00000394994.3/ENST00000328299.3 ST6GALNAC3
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
chr1_+_85236844 -1.13 1.16 7.06E-02 chr1:85236844-85236854 + intergenic intergenic NA NAchr1_+_88012617 -0.71 3.18 8.61E-02 chr1:88012617-88012624 + intergenic intergenic NA NA
chr1_+_89149898 0.38 6.71 8.84E-02 chr1:89149898-89150051 + TSS,SENST00000316005.7/ENST00000370521.3/ENST00000370505.3
PKN2 protein kinase N2
chr1_-_115279412 0.92 1.99 5.38E-02 chr1:115279412-115279489 - CDS_or_noncoding_inner_exon,S
ENST00000339438.6/ENST00000438362.2/ENST00000358528.4/ENST00000261443.5/ENST00000530886.1/ENST00000369530.1/ENST00000534699.1/ENST00000529046.1
CSDE1cold shock domain containing E1, RNA-binding
chr1_-_115292733 1.56 1.44 3.36E-02 chr1:115292733-115292841 - TSS,S ENST00000438362.2 CSDE1cold shock domain containing E1, RNA-binding
chr1_-_152006166 0.90 2.37 6.65E-02 chr1:152006166-152006266 - CDS_or_noncoding_inner_exon,S
ENST00000271638.2/ENST00000478109.1 S100A11 S100 calcium binding
protein A11
chr1_-_154573958 0.71 3.13 2.75E-02 chr1:154573958-154574098 - CDS_or_noncoding_first_exon,S ENST00000529168.1 ADAR adenosine deaminase,
RNA-specificchr1_-_159046537 0.58 3.02 7.35E-02 chr1:159046537-159046735 - TSS,S ENST00000368130.4 AIM2 absent in melanoma 2
chr1_-_160654751 1.44 1.41 7.50E-03 chr1:160654751-160654816 - CDS_or_noncoding_inner_exon,S ENST00000368046.3 CD48 CD48 molecule
chr1_-_169555626 0.64 4.66 1.38E-02 chr1:169555626-169555796 - TSS,S ENST00000546081.1 F5coagulation factor V (proaccelerin, labile factor)
chr1_-_176175769 0.87 1.44 5.34E-02 chr1:176175769-176175878 - TSS,S ENST00000367667.1 RFWD2ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
chr1_-_176176231 0.43 6.27 2.57E-02 chr1:176176231-176176427 - TSS,S ENST00000367665.3/ENST00000436424.1 RFWD2
ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
8484
Persson et al.
chr1_-_182763979 0.89 1.90 1.93E-02 chr1:182763979-182764106 - 5UTR_first_intron,AS
ENST00000367551.3/ENST00000445965.2/ENST00000367554.3
NPL
N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)
chr1_-_183559531 0.50 3.86 8.60E-02 chr1:183559531-183559534 - TSSregion500,SENST00000413720.1/ENST00000418089.1/ENST00000367535.3
NCF2 neutrophil cytosolic factor 2
chr1_-_184943554 0.45 7.34 2.34E-02 chr1:184943554-184943673 - TSSregion500,S ENST00000367511.3 FAM129A family with sequence similarity 129, member A
chr1_-_202910139 -1.28 2.59 4.99E-02 chr1:202910139-202910222 - CDS_or_noncoding_last_exon,S ENST00000495562.1 ADIPOR1 adiponectin receptor 1
chr1_-_21616907 0.56 3.93 6.33E-02 chr1:21616907-21616966 - TSS,S ENST00000436918.2/ENST00000526194.1 ECE1 endothelin converting
enzyme 1
chr1_-_225609805 1.19 0.81 4.37E-02 chr1:225609805-225609973 - TSSregion500,S ENST00000488632.1 LBR lamin B receptor
chr1_-_226820555 -1.93 0.00 9.14E-02 chr1:226820555-226820652 - 3UTR_last_exon,S ENST00000272117.3/ENST00000429204.1 ITPKB inositol-trisphosphate 3-
kinase B
chr1_-_232765762 0.82 2.75 4.95E-02 chr1:232765762-232765928 - intergenic intergenic NA NA
chr1_-_236030142 0.35 6.10 9.66E-02 chr1:236030142-236030327 - TSS,SENST00000389794.3/ENST00000389793.2/ENST00000468626.1
LYST lysosomal trafficking regulator
chr1_-_243418501 0.75 3.41 4.29E-03 chr1:243418501-243418586 - TSS,S ENST00000522522.1/ENST00000523581.1 CEP170 centrosomal protein
170kDa
chr1_-_245027309 0.81 3.65 3.40E-02 chr1:245027309-245027470 - TSSregion500,S ENST00000483966.1/ENST00000476241.1 HNRNPU
heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
chr1_-_28477176 0.89 2.49 4.99E-02 chr1:28477176-28477348 - CDS_or_noncoding_last_exon,S
ENST00000373857.3/ENST00000539896.1/ENST00000305392.3
PTAFR platelet-activating factor receptor
chr1_-_31212683 1.09 3.73 7.54E-03 chr1:31212683-31212797 - CDS_or_noncoding_inner_exon,S
ENST00000294507.3/ENST00000424259.2/ENST00000464569.1
LAPTM5 lysosomal protein transmembrane 5
chr1_-_33799777 1.32 0.38 8.11E-02 chr1:33799777-33799904 - 5UTR_inner_exon,S
ENST00000373416.1/ENST00000373418.3 PHC2 polyhomeotic homolog 2
(Drosophila)
chr1_-_36941018 0.75 4.00 9.06E-02 chr1:36941018-36941126 - TSSregion500,S ENST00000464365.2 CSF3R colony stimulating factor 3 receptor (granulocyte)
8585
Persson et al.
chr1_-_36948439 0.38 9.18 4.15E-02 chr1:36948439-36948567 - TSS,S ENST00000526980.1/ENST00000489551.1 CSF3R colony stimulating factor
3 receptor (granulocyte)
chr1_-_45987517 -0.39 5.94 8.82E-02 chr1:45987517-45987710 - TSS,S
ENST00000262746.1/ENST00000319248.8/ENST00000372079.1/ENST00000447184.1/ENST00000483583.1
PRDX1 peroxiredoxin 1
chr1_-_98386462 0.40 8.08 2.97E-02 chr1:98386462-98386637 - TSS,S
ENST00000370192.3/ENST00000423006.2/ENST00000306031.5/ENST00000460019.1
DPYD dihydropyrimidine dehydrogenase
chr20_+_15497339 -0.85 2.33 4.44E-02 chr20:15497339-15497349 + 5UTR_inner_intron,S ENST00000402914.1 MACROD2 MACRO domain
containing 2
chr20_+_24911243 1.78 1.08 9.20E-04 chr20:24911243-24911352 + CDS_or_noncoding_last_exon,AS ENST00000508332.1 AL035661.1 NA
chr20_+_390518 1.44 -0.41 5.56E-02 chr20:390518-390631 + TSS,S ENST00000414880.1 RBCK1RanBP-type and C3HC4-type zinc finger containing 1
chr20_+_39657421 0.35 7.39 9.33E-02 chr20:39657421-39657533 + TSS,S ENST00000361337.2 TOP1 topoisomerase (DNA) I
chr20_+_48429216 0.76 3.28 4.66E-02 chr20:48429216-48429302 + TSS,S ENST00000417961.1 SLC9A8
solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8
chr20_+_54987221 0.42 5.70 6.25E-02 chr20:54987221-54987332 + TSS,S ENST00000371336.3/ENST00000434344.1 CASS4 Cas scaffolding protein
family member 4
chr20_+_55012355 1.11 0.88 8.61E-02 chr20:55012355-55012552 + CDS_or_noncoding_inner_exon,S
ENST00000360314.3/ENST00000371336.3/ENST00000434344.1/ENST00000497244.1
CASS4 Cas scaffolding protein family member 4
chr20_+_55052033 1.07 0.70 6.88E-02 chr20:55052033-55052146 + CDS_or_noncoding_inner_exon,S
ENST00000023939.4/ENST00000395881.3/ENST00000357348.5/ENST00000449062.1
C20ORF43 NA
chr20_+_57226693 1.17 1.78 1.15E-02 chr20:57226693-57226892 + TSS,S ENST00000496003.1 STX16 syntaxin 16
8686
Persson et al.
chr20_+_57485953 -1.06 2.66 6.85E-02 chr20:57485953-57486034 + CDS_or_noncoding_last_exon,S
ENST00000464624.1/ENST00000477931.1/ENST00000474497.1/ENST00000480975.1/ENST00000487862.1/ENST00000496934.1/ENST00000476196.1
GNAS GNAS complex locus
chr20_+_60126569 -0.83 2.21 6.47E-02 chr20:60126569-60126580 + CDS_or_noncoding_inner_intron,S ENST00000360469.4 CDH4 cadherin 4, type 1, R-
cadherin (retinal)
chr20_+_62505023 0.79 2.69 2.29E-02 chr20:62505023-62505128 + CDS_or_noncoding_inner_exon,S
ENST00000369927.2/ENST00000348257.5/ENST00000346249.4/ENST00000352482.4/ENST00000351424.4/ENST00000217121.5/ENST00000358548.4
TPD52L2 tumor protein D52-like 2
chr20_+_641294 0.67 3.37 9.38E-02 chr20:641294-641469 + CDS_or_noncoding_first_intron,AS ENST00000488788.1 SRXN1
CDNA FLJ25552 fis, clone JTH02127; HBV preS1-transactivated protein 5; Sulfiredoxin 1 homolog (S. cerevisiae), isoform CRA_a; Uncharacterized protein
chr20_-_1350022 -1.94 -0.30 3.04E-02 chr20:1350022-1350071 - 3UTR_last_exon,S ENST00000400137.4 FKBP1A FK506 binding protein 1A, 12kDa
chr20_-_1517946 1.01 0.64 8.84E-02 chr20:1517946-1518012 - CDS_or_noncoding_inner_exon,S
ENST00000429387.1/ENST00000381621.1/ENST00000381623.3
SIRPD signal-regulatory protein delta
chr20_-_20693126 0.51 5.03 7.68E-03 chr20:20693126-20693326 - TSS,SENST00000202677.6/ENST00000424490.1/ENST00000438161.1
RALGAPA2Ral GTPase activating protein, alpha subunit 2 (catalytic)
chr20_-_35519412 -1.40 -0.16 6.10E-02 chr20:35519412-35519538 - 3UTR_last_exon,S ENST00000262878.4 SAMHD1 SAM domain and HD domain 1
chr20_-_3996108 0.47 6.77 1.72E-02 chr20:3996108-3996301 - TSS,S ENST00000358395.6/ENST00000545616.1 RNF24 ring finger protein 24
chr20_-_46365548 1.11 2.32 3.86E-02 chr20:46365548-46365698 - TSS,S ENST00000478766.1 SULF2 sulfatase 2chr20_-_46414166 0.67 4.73 1.90E-02 chr20:46414166-46414260 - TSS,S ENST00000437955.1 SULF2 sulfatase 2
chr20_-_47307518 0.95 1.82 6.36E-02 chr20:47307518-47307642 - CDS_or_noncoding_inner_exon,S
ENST00000371941.3/ENST00000396220.1 PREX1
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
8787
Persson et al.
chr20_-_47361555 1.57 -0.05 6.02E-02 chr20:47361555-47361687 - CDS_or_noncoding_inner_exon,S
ENST00000371941.3/ENST00000396220.1 PREX1
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
chr20_-_48330352 0.58 5.06 1.04E-02 chr20:48330352-48330483 - TSS,S ENST00000371711.4 B4GALT5
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5
chr21_+_17102256 0.63 5.17 9.53E-03 chr21:17102256-17102425 + TSS,SENST00000285679.6/ENST00000351097.5/ENST00000285681.2
USP25 ubiquitin specific peptidase 25
chr21_+_30671121 0.39 6.82 6.76E-02 chr21:30671121-30671276 + TSS,S ENST00000286800.3 BACH1BTB and CNC homology 1, basic leucine zipper transcription factor 1
chr21_+_39596269 1.10 1.67 7.00E-02 chr21:39596269-39596295 + 5UTR_first_intron,S
ENST00000547341.1/ENST00000547595.1/ENST00000548700.1
KCNJ15potassium inwardly-rectifying channel, subfamily J, member 15
chr21_+_39601714 0.76 7.18 1.63E-03 chr21:39601714-39601901 + 5UTR_first_intron,S
ENST00000547341.1/ENST00000547595.1/ENST00000548700.1
KCNJ15potassium inwardly-rectifying channel, subfamily J, member 15
chr21_+_39617290 1.17 0.82 7.14E-02 chr21:39617290-39617456 + 5UTR_first_intron,S
ENST00000547341.1/ENST00000547595.1/ENST00000548700.1
KCNJ15potassium inwardly-rectifying channel, subfamily J, member 15
chr21_+_39668828 1.65 -0.39 5.83E-02 chr21:39668828-39668898 + TSS,S ENST00000419868.1 KCNJ15potassium inwardly-rectifying channel, subfamily J, member 15
chr21_+_39671462 0.90 1.16 5.72E-02 chr21:39671462-39671540 + CDS_or_noncoding_last_exon,S
ENST00000398928.1/ENST00000328656.3/ENST00000398938.2/ENST00000398932.1/ENST00000438657.1/ENST00000398930.1/ENST00000398934.1/ENST00000398927.1/ENST00000419868.1
KCNJ15potassium inwardly-rectifying channel, subfamily J, member 15
8888
Persson et al.
chr21_+_39671857 1.02 0.80 7.09E-02 chr21:39671857-39671983 + CDS_or_noncoding_last_exon,S
ENST00000328656.3/ENST00000398938.2/ENST00000398932.1/ENST00000438657.1/ENST00000398930.1/ENST00000398934.1
KCNJ15potassium inwardly-rectifying channel, subfamily J, member 15
chr21_+_45719910 -0.28 5.55 6.10E-02 chr21:45719910-45720042 + TSS,S
ENST00000349048.4/ENST00000397961.2/ENST00000534847.1/ENST00000381188.3/ENST00000466134.1/ENST00000496824.1
PFKL phosphofructokinase, liver
chr21_+_46937836 0.84 2.01 6.49E-02 chr21:46937836-46938013 + CDS_or_noncoding_inner_intron,AS
ENST00000417954.1/ENST00000380014.2 SLC19A1
solute carrier family 19 (folate transporter), member 1
chr22_+_17565815 0.43 7.93 3.57E-02 chr22:17565815-17565966 + TSS,S
ENST00000425985.2/ENST00000319363.6/ENST00000477874.1/ENST00000459971.1
IL17RA interleukin 17 receptor A
chr22_+_19414171 -0.76 2.63 8.59E-02 chr22:19414171-19414187 + 5UTR_first_intron,AS ENST00000541063.1 HIRA
HIR histone cell cycle regulation defective homolog A (S. cerevisiae)
chr22_+_23260269 -1.27 -0.22 8.35E-02 chr22:23260269-23260341 + CDS_or_noncoding_first_exon,S ENST00000390328.2 IGLJ6 immunoglobulin lambda
joining 6
chr22_+_31608191 0.46 6.93 3.92E-02 chr22:31608191-31608381 + TSS,S
ENST00000406516.1/ENST00000444929.2/ENST00000331728.4/ENST00000462625.1
LIMK2 LIM domain kinase 2
chr22_+_37256994 0.40 8.09 4.02E-02 chr22:37256994-37257180 + TSS,SENST00000447071.1/ENST00000248899.6/ENST00000397147.4
NCF4 neutrophil cytosolic factor 4, 40kDa
chr22_+_37271689 0.71 3.58 6.41E-02 chr22:37271689-37271852 + CDS_or_noncoding_inner_exon,S
ENST00000248899.6/ENST00000397147.4/ENST00000415063.1
NCF4 neutrophil cytosolic factor 4, 40kDa
chr22_+_37309606 0.34 8.86 5.38E-02 chr22:37309606-37309716 + TSS,SENST00000403662.3/ENST00000539104.1/ENST00000262825.5
CSF2RB
colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
8989
Persson et al.
chr22_+_37319274 0.92 2.79 8.79E-02 chr22:37319274-37319334 + TSSregion500,S ENST00000536485.1 CSF2RB
colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
chr22_+_37325440 1.84 0.40 2.91E-02 chr22:37325440-37325566 + CDS_or_noncoding_inner_exon,S
ENST00000403662.3/ENST00000539104.1/ENST00000262825.5/ENST00000406230.1/ENST00000421539.1/ENST00000536485.1
CSF2RB
colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
chr22_+_37688657 1.70 -0.22 2.50E-02 chr22:37688657-37688753 + TSSregion500,S ENST00000467664.1 CYTH4 cytohesin 4
chr22_+_38071589 -0.57 7.06 3.50E-02 chr22:38071589-38071690 + TSS,S
ENST00000215909.5/ENST00000425542.1/ENST00000464120.1/ENST00000480207.1
LGALS1 lectin, galactoside-binding, soluble, 1
chr22_+_39348673 0.34 7.13 6.96E-02 chr22:39348673-39348788 + TSS,S ENST00000402255.1/ENST00000495988.1 APOBEC3A
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
chr22_+_40367790 -1.30 0.20 6.41E-02 chr22:40367790-40367865 + 3UTR_last_exon,S ENST00000344138.4/ENST00000544006.1 GRAP2 GRB2-related adaptor
protein 2
chr22_+_41488564 0.63 4.96 1.13E-02 chr22:41488564-41488632 + 5UTR_first_exon,S ENST00000263253.7 EP300 E1A binding protein
p300
chr22_+_46685674 -1.03 1.77 4.84E-02 chr22:46685674-46685771 + CDS_or_noncoding_inner_exon,S
ENST00000381031.3/ENST00000445282.2/ENST00000451998.1
TTC38 tetratricopeptide repeat domain 38
chr22_-_22221790 0.31 7.61 5.52E-02 chr22:22221790-22221978 - TSS,SENST00000215832.6/ENST00000415911.2/ENST00000398822.3
MAPK1 mitogen-activated protein kinase 1
chr22_-_22307107 0.41 6.50 8.60E-02 chr22:22307107-22307274 - TSS,SENST00000263212.5/ENST00000397495.4/ENST00000497072.1
PPM1Fprotein phosphatase, Mg2+/Mn2+ dependent, 1F
chr22_-_30742329 0.89 2.13 5.14E-02 chr22:30742329-30742519 - TSS,S ENST00000471342.1 SF3A1 splicing factor 3a, subunit 1, 120kDa
9090
Persson et al.
chr22_-_31682123 -1.84 0.14 2.34E-02 chr22:31682123-31682203 - CDS_or_noncoding_last_intron,S
ENST00000215912.5/ENST00000416925.1/ENST00000441972.1/ENST00000487265.2/ENST00000480654.1/ENST00000493034.1
PIK3IP1phosphoinositide-3-kinase interacting protein 1
chr22_-_37532297 1.72 0.11 6.41E-02 chr22:37532297-37532440 - TSSregion500,S ENST00000483573.1 IL2RB interleukin 2 receptor, beta
chr22_-_42828270 0.42 8.17 2.28E-02 chr22:42828270-42828460 - TSS,S ENST00000329021.5/ENST00000355469.4 NFAM1 NFAT activating protein
with ITAM motif 1
chr22_-_43411034 0.38 6.42 5.38E-02 chr22:43411034-43411208 - TSS,S
ENST00000263246.3/ENST00000337959.4/ENST00000453643.1/ENST00000445706.1
PACSIN2protein kinase C and casein kinase substrate in neurons 2
chr2_+_102314123 0.58 6.65 1.63E-03 chr2:102314123-102314207 + TSS,S ENST00000425019.1 MAP4K4mitogen-activated protein kinase kinase kinase kinase 4
chr2_+_102314454 1.81 -0.13 1.25E-02 chr2:102314454-102314482 + TSS,SENST00000302217.5/ENST00000324219.4/ENST00000350198.4
MAP4K4mitogen-activated protein kinase kinase kinase kinase 4
chr2_+_102578487 0.74 2.94 5.92E-02 chr2:102578487-102578594 + TSS,S ENST00000508786.1 AC005035.2 NA
chr2_+_139259327 0.43 4.63 5.38E-02 chr2:139259327-139259395 + TSS,S ENST00000280098.4 SPOPL speckle-type POZ protein-like
chr2_+_139259466 0.82 2.71 1.97E-02 chr2:139259466-139259505 + TSS,S ENST00000430968.1 SPOPL speckle-type POZ protein-like
chr2_+_143828458 0.99 7.57 2.89E-05 chr2:143828458-143828623 + intergenic intergenic NA NA
chr2_+_170684269 2.14 -0.86 3.71E-02 chr2:170684269-170684432 + CDS_or_noncoding_first_exon,S
ENST00000272793.5/ENST00000442603.1/ENST00000418381.1
UBR3ubiquitin protein ligase E3 component n-recognin 3 (putative)
chr2_+_192543694 0.60 3.16 7.36E-02 chr2:192543694-192543736 + TSS,S ENST00000435931.1 OBFC2A NAchr2_+_199716837 -0.60 4.93 8.82E-02 chr2:199716837-199716853 + intergenic intergenic NA NA
chr2_+_201980869 0.35 7.81 4.02E-02 chr2:201980869-201981060 + TSS,S
ENST00000443227.1/ENST00000341222.6/ENST00000340870.5/ENST00000343375.6/ENST00000355558.4/ENST00000341582.6/ENST00000342795.5
CFLAR CASP8 and FADD-like apoptosis regulator
9191
Persson et al.
chr2_+_209130906 0.46 6.37 3.79E-02 chr2:209130906-209131086 + TSS,S
ENST00000264380.4/ENST00000392200.1/ENST00000392202.3/ENST00000443896.1/ENST00000308862.6/ENST00000407449.1/ENST00000422495.1
PIKFYVE phosphoinositide kinase, FYVE finger containing
chr2_+_216981374 1.01 2.07 2.88E-02 chr2:216981374-216981567 + TSSregion500,S ENST00000460284.1 XRCC5
X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
chr2_+_217363518 -0.41 10.32 6.46E-02 chr2:217363518-217363623 + TSS,S
ENST00000446558.1/ENST00000420712.1/ENST00000478153.1/ENST00000490649.1/ENST00000487233.1/ENST00000359681.3
RPL37A ribosomal protein L37a
chr2_+_219082177 1.35 1.39 4.02E-02 chr2:219082177-219082213 + TSS,S ENST00000465395.1 ARPC2actin related protein 2/3 complex, subunit 2, 34kDa
chr2_+_219100132 -0.94 1.66 9.00E-02 chr2:219100132-219100261 + TSSregion500,S ENST00000477992.1 ARPC2actin related protein 2/3 complex, subunit 2, 34kDa
chr2_+_219246723 1.03 0.94 9.70E-02 chr2:219246723-219246756 + TSS,S ENST00000233202.6/ENST00000468221.1 SLC11A1
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
chr2_+_219246887 0.62 7.86 9.20E-04 chr2:219246887-219247077 + TSS,S
ENST00000354352.5/ENST00000539932.1/ENST00000473367.1/ENST00000465984.1/ENST00000486451.1/ENST00000481524.1/ENST00000494322.1/ENST00000471875.1/ENST00000469799.1/ENST00000492413.1/ENST00000475225.1
SLC11A1
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
chr2_+_219249876 1.19 1.61 1.15E-02 chr2:219249876-219249970 + TSS,S ENST00000460592.1 SLC11A1
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
9292
Persson et al.
chr2_+_219610206 0.72 3.42 2.90E-02 chr2:219610206-219610350 + TSS,S ENST00000494428.1 TTLL4 tubulin tyrosine ligase-like family, member 4
chr2_+_232326246 -1.18 1.29 7.85E-02 chr2:232326246-232326433 + CDS_or_noncoding_inner_exon,AS
ENST00000322723.4/ENST00000392033.4/ENST00000322732.7/ENST00000461347.1
NCL nucleolin
chr2_+_238536151 1.04 1.53 5.36E-02 chr2:238536151-238536288 + TSS,S ENST00000308482.9/ENST00000465870.1 LRRFIP1 leucine rich repeat (in
FLII) interacting protein 1
chr2_+_238657838 1.04 1.54 7.39E-02 chr2:238657838-238657938 + CDS_or_noncoding_inner_exon,S
ENST00000308482.9/ENST00000391999.4/ENST00000289175.6/ENST00000244815.5/ENST00000392000.4/ENST00000498053.1
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1
chr2_+_238661946 0.96 1.41 8.87E-02 chr2:238661946-238662103 + CDS_or_noncoding_inner_exon,S
ENST00000308482.9/ENST00000391999.4/ENST00000289175.6/ENST00000244815.5/ENST00000392000.4/ENST00000498053.1
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1
chr2_+_238668718 1.44 -0.32 4.15E-02 chr2:238668718-238668851 + CDS_or_noncoding_inner_exon,S
ENST00000308482.9/ENST00000391999.4/ENST00000289175.6/ENST00000244815.5/ENST00000392000.4/ENST00000483443.1
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1
chr2_+_24714107 0.39 5.84 6.41E-02 chr2:24714107-24714155 + upstream1000,S
ENST00000496333.1/ENST00000406961.1/ENST00000469850.1/ENST00000405141.1
NCOA1 nuclear receptor coactivator 1
chr2_+_28618534 0.39 4.61 9.46E-02 chr2:28618534-28618609 + TSS,S ENST00000545753.1 FOSL2 FOS-like antigen 2
chr2_+_29024252 -1.26 1.94 1.24E-02 chr2:29024252-29024316 + 3UTR_last_exon,SENST00000358506.2/ENST00000296122.6/ENST00000395366.2
PPP1CBprotein phosphatase 1, catalytic subunit, beta isozyme
chr2_+_37571768 0.46 6.98 3.64E-02 chr2:37571768-37571897 + TSS,S ENST00000537448.1/ENST00000470075.1 QPCT glutaminyl-peptide
cyclotransferase
9393
Persson et al.
chr2_+_37579924 1.30 0.81 8.45E-02 chr2:37579924-37580047 + CDS_or_noncoding_inner_exon,S
ENST00000338415.3/ENST00000470075.1 QPCT glutaminyl-peptide
cyclotransferase
chr2_+_37586708 1.22 0.50 6.65E-02 chr2:37586708-37586878 + CDS_or_noncoding_inner_exon,S
ENST00000338415.3/ENST00000404976.1/ENST00000537448.1/ENST00000480050.1
QPCT glutaminyl-peptide cyclotransferase
chr2_+_37844443 1.21 0.97 3.95E-02 chr2:37844443-37844534 + CDS_or_noncoding_inner_intron,S ENST00000419425.1 AC006369.2
chr2_+_54893030 -1.15 0.33 9.05E-02 chr2:54893030-54893196 + CDS_or_noncoding_inner_exon,S
ENST00000356805.4/ENST00000467371.1 SPTBN1 spectrin, beta, non-
erythrocytic 1
chr2_+_64500836 0.48 5.94 5.38E-02 chr2:64500836-64501025 + intergenic intergenic NA NA
chr2_+_68607452 0.97 2.48 4.23E-02 chr2:68607452-68607579 + CDS_or_noncoding_inner_exon,S ENST00000234313.7 PLEK pleckstrin
chr2_+_68620292 1.10 1.01 5.42E-02 chr2:68620292-68620352 + CDS_or_noncoding_inner_exon,S
ENST00000234313.7/ENST00000474788.1 PLEK pleckstrin
chr2_+_68623050 0.76 1.84 8.73E-02 chr2:68623050-68623206 + 3UTR_last_exon,S ENST00000234313.7 PLEK pleckstrin
chr2_+_71680665 0.65 7.12 1.66E-03 chr2:71680665-71680831 + TSSregion500,S
ENST00000413539.2/ENST00000409762.1/ENST00000409582.3/ENST00000429174.2/ENST00000258104.3
DYSFdysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
chr2_+_71681136 1.25 1.64 2.35E-02 chr2:71681136-71681158 + CDS_or_noncoding_first_exon,S
ENST00000413539.2/ENST00000409762.1/ENST00000409582.3/ENST00000429174.2/ENST00000258104.3
DYSFdysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
chr2_+_71738927 0.88 1.74 4.51E-02 chr2:71738927-71739023 + CDS_or_noncoding_inner_exon,S
ENST00000413539.2/ENST00000409762.1/ENST00000409582.3/ENST00000429174.2/ENST00000258104.3/ENST00000409366.1/ENST00000409651.1/ENST00000410020.3/ENST00000410041.1/ENST00000409744.1/ENST00000394120.2
DYSFdysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
9494
Persson et al.
chr2_+_71804280 1.47 0.67 1.26E-02 chr2:71804280-71804359 + CDS_or_noncoding_first_intron,S ENST00000475076.1 DYSF
dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
chr2_+_73476129 1.51 0.06 4.37E-02 chr2:73476129-73476259 + CDS_or_noncoding_inner_exon,S
ENST00000540468.1/ENST00000539919.1/ENST00000258091.5/ENST00000398422.2/ENST00000537131.1/ENST00000538797.1/ENST00000409081.1/ENST00000473786.1
CCT7 chaperonin containing TCP1, subunit 7 (eta)
chr2_+_74212020 0.62 3.65 2.35E-02 chr2:74212020-74212167 + TSSregion500,S ENST00000441217.1 AC073046.25chr2_+_7865810 -0.74 4.90 1.68E-02 chr2:7865810-7865995 + TSS,S ENST00000417930.1 AC092580.4chr2_+_85132767 -0.40 10.64 1.63E-02 chr2:85132767-85132811 + TSSregion500,S ENST00000233143.4 TMSB10 thymosin beta 10
chr2_-_101924616 0.83 1.78 8.21E-02 chr2:101924616-101924734 - CDS_or_noncoding_first_exon,S
ENST00000424632.1/ENST00000295317.3 RNF149 ring finger protein 149
chr2_-_101925032 0.30 9.22 6.68E-02 chr2:101925032-101925202 - TSS,S ENST00000424632.1/ENST00000295317.3 RNF149 ring finger protein 149
chr2_-_127453574 -2.41 -0.18 6.61E-02 chr2:127453574-127453653 - CDS_or_noncoding_last_exon,AS
ENST00000259254.4/ENST00000356887.7/ENST00000409836.3/ENST00000464053.1
GYPC glycophorin C (Gerbich blood group)
chr2_-_128145482 0.36 6.42 3.36E-02 chr2:128145482-128145644 - TSS,S ENST00000409179.2 MAP3K2mitogen-activated protein kinase kinase kinase 2
chr2_-_133012865 -1.14 5.90 4.06E-02 chr2:133012865-133012913 - CDS_or_noncoding_first_intron,S ENST00000470729.1 ANKRD30BL ankyrin repeat domain
30B-likechr2_-_133038162 -0.71 3.20 8.15E-02 chr2:133038162-133038243 - intergenic intergenic NA NA
chr2_-_158287039 1.40 0.20 3.60E-02 chr2:158287039-158287168 - CDS_or_noncoding_inner_exon,S
ENST00000540637.1/ENST00000264192.3/ENST00000418920.1
CYTIP cytohesin 1 interacting protein
chr2_-_160472897 0.53 5.85 2.89E-02 chr2:160472897-160473078 - TSS,S
ENST00000343439.5/ENST00000355831.2/ENST00000546335.1/ENST00000541068.2/ENST00000483316.1
BAZ2B bromodomain adjacent to zinc finger domain, 2B
9595
Persson et al.
chr2_-_175436460 1.64 -0.74 8.40E-02 chr2:175436460-175436493 - CDS_or_noncoding_inner_exon,S
ENST00000272746.5/ENST00000359761.3/ENST00000392547.2/ENST00000392546.2/ENST00000409891.1
WIPF1 WAS/WASL interacting protein family, member 1
chr2_-_175436682 0.49 4.01 7.73E-02 chr2:175436682-175436841 - CDS_or_noncoding_inner_exon,S
ENST00000272746.5/ENST00000359761.3/ENST00000392547.2/ENST00000392546.2/ENST00000409891.1
WIPF1 WAS/WASL interacting protein family, member 1
chr2_-_175439928 0.84 1.53 4.06E-02 chr2:175439928-175440116 - CDS_or_noncoding_inner_exon,S
ENST00000392548.2/ENST00000272746.5/ENST00000359761.3/ENST00000409415.3/ENST00000392547.2/ENST00000392546.2/ENST00000409891.1/ENST00000455428.1/ENST00000410117.1
WIPF1 WAS/WASL interacting protein family, member 1
chr2_-_198175391 0.45 6.99 2.87E-02 chr2:198175391-198175567 - TSS,S
ENST00000409153.1/ENST00000539527.1/ENST00000409919.1/ENST00000447713.1/ENST00000463879.1
ANKRD44 ankyrin repeat domain 44
chr2_-_202245651 -1.41 0.50 6.21E-02 chr2:202245651-202245660 - CDS_or_noncoding_inner_exon,S ENST00000542292.1 TRAK2 trafficking protein,
kinesin binding 2
chr2_-_231077512 1.00 2.55 4.23E-02 chr2:231077512-231077673 - TSS,S ENST00000486146.1 SP110 SP110 nuclear body protein
chr2_-_235403494 -2.04 -0.36 4.21E-02 chr2:235403494-235403598 - 3UTR_first_exon,S ENST00000390645.2 ARL4C ADP-ribosylation factor-
like 4C
chr2_-_235403833 -1.51 0.07 2.54E-02 chr2:235403833-235403954 - 3UTR_first_exon,S ENST00000390645.2 ARL4C ADP-ribosylation factor-
like 4C
chr2_-_235405663 -0.96 2.25 5.19E-02 chr2:235405663-235405664 - TSSregion500,S ENST00000390645.2/ENST00000339728.3 ARL4C ADP-ribosylation factor-
like 4C
9696
Persson et al.
chr2_-_24583288 0.41 6.18 4.46E-02 chr2:24583288-24583431 - TSS,S
ENST00000380868.2/ENST00000445614.1/ENST00000406921.3/ENST00000412011.1/ENST00000443927.1/ENST00000407704.1
ITSN2 intersectin 2
chr2_-_27294239 0.80 1.56 6.97E-02 chr2:27294239-27294240 - TSSregion500,S ENST00000429985.1 OST4oligosaccharyltransferase 4 homolog (S. cerevisiae)
chr2_-_27294243 0.75 3.80 1.40E-02 chr2:27294243-27294261 - TSSregion500,S ENST00000429985.1 OST4oligosaccharyltransferase 4 homolog (S. cerevisiae)
chr2_-_37898705 0.50 7.03 2.02E-02 chr2:37898705-37898841 - TSSregion500,S ENST00000295324.3 CDC42EP3 CDC42 effector protein (Rho GTPase binding) 3
chr2_-_37989352 0.99 1.44 6.41E-02 chr2:37989352-37989479 - intergenic intergenic NA NA
chr2_-_40679155 0.67 4.49 1.58E-02 chr2:40679155-40679298 - TSS,S ENST00000406785.1 SLC8A1solute carrier family 8 (sodium/calcium exchanger), member 1
chr2_-_61698201 0.68 3.90 2.34E-02 chr2:61698201-61698395 - TSSregion500,S ENST00000398571.2/ENST00000453133.1 USP34 ubiquitin specific
peptidase 34
chr2_-_64502577 0.66 3.05 4.15E-02 chr2:64502577-64502686 - intergenic intergenic NA NAchr2_-_74381768 -1.29 1.34 8.18E-02 chr2:74381768-74381872 - intergenic intergenic NA NA
chr2_-_96919582 0.82 1.82 4.62E-02 chr2:96919582-96919757 - CDS_or_noncoding_last_exon,S
ENST00000258439.2/ENST00000432959.1/ENST00000435268.1
TMEM127 transmembrane protein 127
chr3_+_107844504 1.13 0.90 7.48E-02 chr3:107844504-107844686 + intergenic intergenic NA NA
chr3_+_122513657 0.79 3.53 3.92E-02 chr3:122513657-122513757 + TSSregion500,S ENST00000261038.5/ENST00000477647.1 DIRC2 disrupted in renal
carcinoma 2
chr3_+_122513900 0.64 4.34 5.75E-03 chr3:122513900-122513988 + TSS,S ENST00000477647.1 DIRC2 disrupted in renal carcinoma 2
chr3_+_129295962 -2.03 -0.66 7.43E-02 chr3:129295962-129296081 + CDS_or_noncoding_first_intron,AS ENST00000505505.1 PLXND1 plexin D1
chr3_+_134204894 0.45 5.63 7.80E-02 chr3:134204894-134205087 + TSS,S
ENST00000337090.3/ENST00000383229.3/ENST00000512894.1/ENST00000513612.1/ENST00000504013.1
CEP63 centrosomal protein 63kDa
chr3_+_134314096 0.58 5.09 6.15E-02 chr3:134314096-134314143 + intergenic intergenic NA NA
9797
Persson et al.
chr3_+_134316590 0.57 6.28 7.54E-03 chr3:134316590-134316736 + TSS,SENST00000467708.2/ENST00000467013.1/ENST00000472904.1
EPHB1 EPH receptor B1
chr3_+_134334086 0.73 2.88 2.23E-02 chr3:134334086-134334242 + TSS,S ENST00000460895.1 EPHB1 EPH receptor B1
chr3_+_14076729 -0.98 3.54 1.11E-02 chr3:14076729-14076747 + 5UTR_first_intron,S
ENST00000528312.1/ENST00000424053.1/ENST00000429201.1/ENST00000326972.8/ENST00000529129.1
TPRXL tetra-peptide repeat homeobox-like
chr3_+_14444052 0.39 8.36 4.19E-02 chr3:14444052-14444251 + TSS,S
ENST00000427436.1/ENST00000454876.2/ENST00000458124.1/ENST00000360861.3/ENST00000416216.2/ENST00000435095.1/ENST00000490683.1/ENST00000428884.2/ENST00000484191.1
SLC6A6
solute carrier family 6 (neurotransmitter transporter, taurine), member 6
chr3_+_152132711 0.87 2.79 4.15E-02 chr3:152132711-152132878 + TSS,S ENST00000478535.1/ENST00000460166.1 MBNL1 muscleblind-like splicing
regulator 1
chr3_+_152173823 -2.07 -0.61 2.66E-02 chr3:152173823-152173858 + CDS_or_noncoding_inner_intron,S
ENST00000282486.6/ENST00000282488.7/ENST00000355460.2/ENST00000493459.1/ENST00000324210.5/ENST00000324196.5/ENST00000545754.1/ENST00000485910.1/ENST00000463374.1/ENST00000485509.1/ENST00000465907.2/ENST00000498502.1/ENST00000357472.3/ENST00000478535.1
MBNL1 muscleblind-like splicing regulator 1
chr3_+_152180436 -1.30 0.52 3.56E-02 chr3:152180436-152180459 + CDS_or_noncoding_last_exon,S ENST00000497971.1 MBNL1 muscleblind-like splicing
regulator 1
chr3_+_152881837 -1.21 2.56 8.21E-02 chr3:152881837-152881954 + 3UTR_first_exon,S ENST00000323534.2 RAP2B RAP2B, member of RAS
oncogene family
chr3_+_154797641 0.45 5.41 6.58E-02 chr3:154797641-154797694 + TSS,S ENST00000481828.1 MME membrane metallo-endopeptidase
9898
Persson et al.
chr3_+_154797705 0.74 2.28 6.15E-02 chr3:154797705-154797719 + TSSregion500,S
ENST00000481828.1/ENST00000382989.3/ENST00000462745.1/ENST00000493237.1/ENST00000360490.2
MME membrane metallo-endopeptidase
chr3_+_154798080 0.65 5.23 8.77E-03 chr3:154798080-154798152 + TSSregion500,SENST00000382989.3/ENST00000462745.1/ENST00000360490.2
MME membrane metallo-endopeptidase
chr3_+_171757337 0.52 5.60 8.99E-03 chr3:171757337-171757442 + TSS,SENST00000415807.2/ENST00000392699.1/ENST00000421757.1
FNDC3B fibronectin type III domain containing 3B
chr3_+_182511253 0.37 6.74 6.84E-02 chr3:182511253-182511417 + TSS,S ENST00000323116.5/ENST00000493826.1 ATP11B ATPase, class VI, type
11B
chr3_+_183401648 -1.77 -0.88 7.98E-02 chr3:183401648-183401770 + intergenic intergenic NA NA
chr3_+_187871940 0.62 3.11 5.83E-02 chr3:187871940-187872004 + 5UTR_first_intron,S
ENST00000430340.1/ENST00000414139.1/ENST00000448637.1/ENST00000416784.1/ENST00000454789.1
LPPLIM domain containing preferred translocation partner in lipoma
chr3_+_196509483 1.41 0.48 3.64E-02 chr3:196509483-196509678 + 5UTR_inner_exon,S ENST00000327134.3 PAK2
p21 protein (Cdc42/Rac)-activated kinase 2
chr3_+_196529890 0.96 1.25 8.21E-02 chr3:196529890-196530038 + CDS_or_noncoding_inner_exon,S
ENST00000327134.3/ENST00000488224.2 PAK2
p21 protein (Cdc42/Rac)-activated kinase 2
chr3_+_24215269 1.86 -0.22 4.06E-02 chr3:24215269-24215356 + CDS_or_noncoding_inner_intron,AS
ENST00000396671.2/ENST00000356447.4/ENST00000416420.1/ENST00000413780.1
THRB thyroid hormone receptor, beta
9999
Persson et al.
chr3_+_24513404 -0.71 3.57 5.52E-02 chr3:24513404-24513423 + 5UTR_first_intron,AS
ENST00000396671.2/ENST00000356447.4/ENST00000416420.1/ENST00000413780.1/ENST00000415021.1/ENST00000447875.1/ENST00000453729.2/ENST00000431815.1/ENST00000447414.1/ENST00000416811.2/ENST00000428492.1/ENST00000418247.1
THRB thyroid hormone receptor, beta
chr3_+_30648316 0.98 2.86 1.88E-02 chr3:30648316-30648432 + TSSregion500,SENST00000295754.5/ENST00000383765.3/ENST00000359013.4
TGFBR2transforming growth factor, beta receptor II (70/80kDa)
chr3_+_30691750 1.77 0.61 5.13E-02 chr3:30691750-30691834 + 5UTR_inner_exon,S
ENST00000383765.3/ENST00000439925.2 TGFBR2
transforming growth factor, beta receptor II (70/80kDa)
chr3_+_32071636 -0.85 0.92 6.41E-02 chr3:32071636-32071652 + TSSregion500,S ENST00000428586.1 RPL21P40 ribosomal protein L21 pseudogene 40
chr3_+_43732357 0.38 6.91 7.27E-02 chr3:43732357-43732514 + TSS,SENST00000458276.2/ENST00000013894.2/ENST00000486764.1
ABHD5 abhydrolase domain containing 5
chr3_+_43740757 1.31 -0.01 8.35E-02 chr3:43740757-43740937 + 5UTR_inner_exon,S
ENST00000456453.1/ENST00000454293.1 ABHD5 abhydrolase domain
containing 5
chr3_+_47029431 0.41 6.53 2.50E-02 chr3:47029431-47029533 + TSS,S ENST00000296147.3 NBEAL2 neurobeachin-like 2
chr3_+_50129468 1.09 1.86 5.81E-02 chr3:50129468-50129613 + CDS_or_noncoding_inner_exon,S
ENST00000347869.3/ENST00000469838.1/ENST00000404526.2/ENST00000536082.1/ENST00000441305.1/ENST00000438369.1/ENST00000437500.1/ENST00000417905.1/ENST00000543047.1/ENST00000539538.1/ENST00000433556.2/ENST00000464087.2/ENST00000492472.1
RBM5 RNA binding motif protein 5
chr3_+_50289821 0.84 2.37 5.42E-02 chr3:50289821-50289947 + 5UTR_inner_exon, ENST00000536647.1 GNAI2 guanine nucleotide
100100
Persson et al.
Sbinding protein (G protein), alpha inhibiting activity polypeptide 2
chr3_+_50290446 0.72 4.60 8.17E-02 chr3:50290446-50290591 + TSS,S ENST00000468422.1 GNAI2
guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
chr3_+_50294924 1.04 3.16 8.01E-02 chr3:50294924-50295055 + CDS_or_noncoding_inner_exon,S
ENST00000422163.1/ENST00000313601.6/ENST00000536647.1/ENST00000540560.1/ENST00000440628.1/ENST00000451956.1/ENST00000266027.5/ENST00000491100.1/ENST00000490122.1
GNAI2
guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
chr3_+_53195520 0.51 3.90 3.34E-02 chr3:53195520-53195563 + TSS,S ENST00000487897.1 PRKCD protein kinase C, delta
chr3_+_55047089 -0.81 2.66 8.21E-02 chr3:55047089-55047110 + CDS_or_noncoding_inner_intron,S
ENST00000415676.2/ENST00000288197.5/ENST00000474759.1/ENST00000490478.1/ENST00000398624.2/ENST00000478261.1/ENST00000471865.1
CACNA2D3calcium channel, voltage-dependent, alpha 2/delta subunit 3
chr3_+_63898332 0.56 3.86 5.69E-02 chr3:63898332-63898394 + CDS_or_noncoding_first_exon,S
ENST00000539129.1/ENST00000538065.1 ATXN7 ataxin 7
chr3_+_66352942 -1.12 0.95 5.75E-02 chr3:66352942-66353124 + CDS_or_noncoding_inner_intron,S
ENST00000354883.6/ENST00000336733.5/ENST00000413054.1/ENST00000483224.1/ENST00000464350.1/ENST00000484768.1
SLC25A26solute carrier family 25 (S-adenosylmethionine carrier), member 26
chr3_+_66354155 -1.23 0.65 8.12E-02 chr3:66354155-66354296 + CDS_or_noncoding_inner_intron,S
ENST00000354883.6/ENST00000336733.5/ENST00000413054.1/ENST00000483224.1/ENST00000464350.1/ENST00000484768.1
SLC25A26solute carrier family 25 (S-adenosylmethionine carrier), member 26
chr3_+_71803493 0.53 4.41 7.82E-02 chr3:71803493-71803677 + CDS_or_noncoding_first_exon,S ENST00000304411.2 GPR27 G protein-coupled
receptor 27chr3_+_71900002 1.43 1.48 2.38E-02 chr3:71900002-71900172 + intergenic intergenic NA NA
101101
Persson et al.
chr3_+_72128314 -1.71 0.07 8.17E-03 chr3:72128314-72128352 + CDS_or_noncoding_first_intron,AS ENST00000470712.1 RP11-398A8.3
chr3_-_121363675 0.92 1.81 4.94E-02 chr3:121363675-121363781 - CDS_or_noncoding_inner_exon,S
ENST00000314583.3/ENST00000428394.2/ENST00000495491.1/ENST00000464274.1/ENST00000487290.1
HCLS1 hematopoietic cell-specific Lyn substrate 1
chr3_-_121366188 0.82 1.66 6.72E-02 chr3:121366188-121366301 - CDS_or_noncoding_inner_exon,S
ENST00000314583.3/ENST00000428394.2/ENST00000495491.1/ENST00000464274.1/ENST00000497391.1/ENST00000487290.1/ENST00000481314.1
HCLS1 hematopoietic cell-specific Lyn substrate 1
chr3_-_122233636 0.36 6.50 4.36E-02 chr3:122233636-122233829 - TSS,S
ENST00000344337.6/ENST00000494339.1/ENST00000465882.1/ENST00000476916.1/ENST00000493510.1
KPNA1 karyopherin alpha 1 (importin alpha 5)
chr3_-_122274561 1.04 0.80 9.73E-02 chr3:122274561-122274684 - CDS_or_noncoding_inner_exon,S
ENST00000360356.2/ENST00000477522.1/ENST00000471785.1/ENST00000452457.2/ENST00000462315.1
PARP9poly (ADP-ribose) polymerase family, member 9
chr3_-_122512503 0.59 4.62 1.72E-02 chr3:122512503-122512701 - TSS,S
ENST00000383659.1/ENST00000306103.2/ENST00000465044.1/ENST00000467643.1/ENST00000478601.1
HSPBAP1HSPB (heat shock 27kDa) associated protein 1
chr3_-_128889987 0.89 2.38 4.84E-02 chr3:128889987-128890131 - CDS_or_noncoding_inner_exon,S
ENST00000502976.1/ENST00000422453.2/ENST00000451728.2/ENST00000446936.2/ENST00000500450.2/ENST00000504813.1/ENST00000441626.2/ENST00000502372.1
CNBPCCHC-type zinc finger, nucleic acid binding protein
102102
Persson et al.
chr3_-_150460300 1.01 1.46 6.84E-02 chr3:150460300-150460491 - CDS_or_noncoding_last_exon,S
ENST00000312960.3/ENST00000482706.1 SIAH2 siah E3 ubiquitin protein
ligase 2
chr3_-_151923166 0.57 3.28 2.53E-02 chr3:151923166-151923339 - intergenic intergenic NA NA
chr3_-_167441788 1.32 -0.07 6.33E-02 chr3:167441788-167441886 - 5UTR_first_intron,S
ENST00000497056.2/ENST00000492396.1/ENST00000461494.1/ENST00000487947.2
PDCD10 programmed cell death 10
chr3_-_187447204 1.14 1.25 9.65E-03 chr3:187447204-187447361 - CDS_or_noncoding_inner_exon,S
ENST00000406870.2/ENST00000232014.4/ENST00000450123.2
BCL6 B-cell CLL/lymphoma 6
chr3_-_187461786 0.94 0.91 9.44E-02 chr3:187461786-187461894 - 5UTR_first_intron,S ENST00000406870.2 BCL6 B-cell CLL/lymphoma 6
chr3_-_187463112 0.43 8.07 7.24E-03 chr3:187463112-187463267 - TSS,SENST00000480458.1/ENST00000470319.1/ENST00000496823.1
BCL6 B-cell CLL/lymphoma 6
chr3_-_195163669 0.46 7.66 1.04E-02 chr3:195163669-195163867 - TSS,SENST00000326793.6/ENST00000480906.1/ENST00000490224.1
ACAP2ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
chr3_-_42814656 1.22 0.69 4.02E-02 chr3:42814656-42814773 - TSS,SENST00000310232.6/ENST00000492806.1/ENST00000435327.2
CCDC13 coiled-coil domain containing 13
chr3_-_44463096 1.54 0.13 7.09E-02 chr3:44463096-44463294 - CDS_or_noncoding_last_exon,S ENST00000416124.1 RP11-
101C21.1
chr3_-_49405883 0.85 3.55 2.34E-02 chr3:49405883-49405994 - CDS_or_noncoding_inner_exon,S
ENST00000418115.1/ENST00000422781.1/ENST00000445425.1
RHOA ras homolog family member A
chr3_-_71834165 0.51 6.21 3.41E-02 chr3:71834165-71834351 - TSS,S ENST00000295619.3 PROK2 prokineticin 2
chr3_-_71834513 0.76 3.64 1.72E-02 chr3:71834513-71834599 - TSSregion500,S ENST00000353065.3/ENST00000295619.3 PROK2 prokineticin 2
chr3_-_81810672 0.69 3.32 1.05E-02 chr3:81810672-81810857 - TSS,S ENST00000264326.4/ENST00000536832.1 GBE1 glucan (1,4-alpha-),
branching enzyme 1
chr4_+_100732698 -0.81 5.22 2.57E-02 chr4:100732698-100732710 + intergenic intergenic NA NA
chr4_+_100737859 0.35 7.33 8.59E-02 chr4:100737859-100738049 + TSS,SENST00000296414.7/ENST00000512369.1/ENST00000507994.1
DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides
103103
Persson et al.
chr4_+_106067814 0.48 3.68 6.36E-02 chr4:106067814-106067854 + TSSregion500,S
ENST00000513237.1/ENST00000540549.1/ENST00000545826.1/ENST00000380013.4/ENST00000265149.5/ENST00000394764.1/ENST00000413648.2/ENST00000535110.1/ENST00000504042.1/ENST00000505801.1
TET2 tet methylcytosine dioxygenase 2
chr4_+_106068009 0.44 6.97 2.02E-02 chr4:106068009-106068080 + TSS,SENST00000413648.2/ENST00000535110.1/ENST00000504042.1
TET2 tet methylcytosine dioxygenase 2
chr4_+_106111495 1.95 0.09 2.41E-02 chr4:106111495-106111695 + 5UTR_inner_exon,S
ENST00000513237.1/ENST00000540549.1/ENST00000545826.1/ENST00000380013.4/ENST00000265149.5/ENST00000305737.2/ENST00000394764.1/ENST00000514870.1
TET2 tet methylcytosine dioxygenase 2
chr4_+_113218425 0.56 6.82 5.47E-03 chr4:113218425-113218601 + TSS,S
ENST00000458497.1/ENST00000309610.6/ENST00000177648.9/ENST00000504176.2/ENST00000509722.1/ENST00000505127.1/ENST00000515330.1/ENST00000515106.1/ENST00000505176.1/ENST00000502366.1/ENST00000509688.1/ENST00000426472.2/ENST00000504488.1
ALPK1 alpha-kinase 1
chr4_+_11370217 -0.64 3.79 7.43E-02 chr4:11370217-11370254 + upstream1000,S ENST00000384983.1 MIR572 microRNA 572chr4_+_123073450 0.46 6.00 7.43E-02 chr4:123073450-123073647 + TSS,S ENST00000264501.4 KIAA1109 KIAA1109
chr4_+_144257306 0.77 2.34 4.55E-02 chr4:144257306-144257366 + CDS_or_noncoding_last_exon,AS ENST00000317872.3 AC097658.1
chr4_+_144257546 0.80 2.69 1.24E-02 chr4:144257546-144257682 + TSSregion500,S ENST00000262995.4/ENST00000262994.4 GAB1 GRB2-associated
binding protein 1
104104
Persson et al.
chr4_+_148973857 -1.02 1.79 4.11E-02 chr4:148973857-148974004 + CDS_or_noncoding_inner_intron,S
ENST00000336498.3/ENST00000507661.1/ENST00000414545.2/ENST00000506054.1/ENST00000506020.1
ARHGAP10 Rho GTPase activating protein 10
chr4_+_15964123 -1.84 0.59 3.05E-02 chr4:15964123-15964302 + CDS_or_noncoding_first_exon,AS ENST00000259989.6 FGFBP2 fibroblast growth factor
binding protein 2
chr4_+_166128707 0.52 5.17 3.53E-02 chr4:166128707-166128835 + TSS,S ENST00000226725.6 KLHL2 kelch-like 2, Mayven (Drosophila)
chr4_+_1725443 2.42 -1.11 4.97E-02 chr4:1725443-1725504 + CDS_or_noncoding_inner_exon,S
ENST00000485989.2/ENST00000467746.1/ENST00000313288.4/ENST00000343760.6/ENST00000493975.1/ENST00000458173.3/ENST00000484651.1
TACC3transforming, acidic coiled-coil containing protein 3
chr4_+_17579021 -0.48 6.48 6.46E-02 chr4:17579021-17579172 + TSS,SENST00000509583.1/ENST00000508497.1/ENST00000512397.1
LAP3 leucine aminopeptidase 3
chr4_+_17633521 -1.97 -0.39 2.49E-02 chr4:17633521-17633713 + 3UTR_last_exon,AS ENST00000265018.3 FAM184B family with sequence
similarity 184, member B
chr4_+_177252331 -1.23 1.46 5.93E-02 chr4:177252331-177252348 + 3UTR_last_exon,S ENST00000503362.1 SPCS3signal peptidase complex subunit 3 homolog (S. cerevisiae)
chr4_+_185606080 0.82 1.65 8.21E-02 chr4:185606080-185606277 + CDS_or_noncoding_first_intron,S ENST00000508001.1 CCDC111 coiled-coil domain
containing 111
chr4_+_38690248 1.52 1.99 2.18E-02 chr4:38690248-38690381 + CDS_or_noncoding_inner_exon,S
ENST00000261438.5/ENST00000514033.1 KLF3 Kruppel-like factor 3
(basic)
chr4_+_38701349 -2.02 -1.03 5.67E-02 chr4:38701349-38701423 + 3UTR_last_exon,S ENST00000261438.5 KLF3 Kruppel-like factor 3 (basic)
chr4_+_56814940 0.49 3.83 8.59E-02 chr4:56814940-56815130 + TSS,S ENST00000422247.2/ENST00000506809.1 CEP135 centrosomal protein
135kDa
chr4_+_6580553 -1.00 0.76 5.75E-02 chr4:6580553-6580714 + CDS_or_noncoding_inner_intron,S
ENST00000285599.3/ENST00000504248.1/ENST00000505907.1
MAN2B2 mannosidase, alpha, class 2B, member 2
chr4_+_6784331 0.35 5.43 5.94E-02 chr4:6784331-6784529 + TSS,SENST00000508423.1/ENST00000425103.1/ENST00000307659.5
KIAA0232 KIAA0232
105105
Persson et al.
chr4_+_6911497 0.43 6.54 1.76E-02 chr4:6911497-6911604 + TSS,S ENST00000409757.4 TBC1D14 TBC1 domain family, member 14
chr4_+_6911938 1.24 0.27 5.97E-02 chr4:6911938-6912022 + TSS,S ENST00000427736.1 TBC1D14 TBC1 domain family, member 14
chr4_+_7339673 -1.79 -0.21 1.62E-02 chr4:7339673-7339685 + CDS_or_noncoding_first_intron,S ENST00000507866.2 SORCS2
sortilin-related VPS10 domain containing receptor 2
chr4_+_78085630 -2.38 -0.44 9.97E-02 chr4:78085630-78085692 + CDS_or_noncoding_inner_exon,S
ENST00000316355.5/ENST00000354403.5/ENST00000502280.1/ENST00000395640.1/ENST00000497512.1
CCNG2 cyclin G2
chr4_+_79697462 0.49 5.42 7.31E-02 chr4:79697462-79697578 + TSS,S
ENST00000335016.5/ENST00000389010.3/ENST00000264889.8/ENST00000502871.1
BMP2K BMP2 inducible kinase
chr4_+_86396344 0.88 2.49 1.40E-02 chr4:86396344-86396389 + TSSregion500,S
ENST00000395184.1/ENST00000503995.1/ENST00000506421.1/ENST00000505856.1
ARHGAP24 Rho GTPase activating protein 24
chr4_+_87927709 1.18 0.16 8.66E-02 chr4:87927709-87927758 + TSSregion500,S ENST00000307808.6 AFF1 AF4/FMR2 family, member 1
chr4_+_87928307 0.49 5.60 5.41E-02 chr4:87928307-87928432 + TSS,S ENST00000511722.1/ENST00000544085.1 AFF1 AF4/FMR2 family,
member 1
chr4_+_89513537 0.38 5.52 3.97E-02 chr4:89513537-89513710 + TSS,S
ENST00000402738.1/ENST00000431413.1/ENST00000422770.1/ENST00000407637.1
HERC3HECT and RLD domain containing E3 ubiquitin protein ligase 3
chr4_-_130014582 0.43 6.22 9.41E-02 chr4:130014582-130014775 - TSS,S
ENST00000281142.5/ENST00000434680.1/ENST00000511426.1/ENST00000503401.1
SCLT1 sodium channel and clathrin linker 1
chr4_-_13629219 0.40 6.39 8.21E-02 chr4:13629219-13629413 - TSS,S ENST00000040738.5/ENST00000482713.1 BOD1L NA
chr4_-_140098331 0.49 4.25 2.99E-02 chr4:140098331-140098392 - TSS,SENST00000394235.1/ENST00000511184.1/ENST00000511006.1
ELF2E74-like factor 2 (ets domain transcription factor)
106106
Persson et al.
chr4_-_140374834 1.13 1.29 3.78E-02 chr4:140374834-140374940 - TSSregion500,AS ENST00000305626.5/ENST00000507271.1 RAB33B RAB33B, member RAS
oncogene family
chr4_-_153601041 0.33 7.97 7.76E-02 chr4:153601041-153601228 - TSS,S ENST00000504064.1 TMEM154 transmembrane protein 154
chr4_-_15661430 0.50 7.22 2.60E-02 chr4:15661430-15661568 - TSS,S ENST00000503196.1/ENST00000509314.1 FBXL5 F-box and leucine-rich
repeat protein 5
chr4_-_169401522 0.49 6.80 4.95E-02 chr4:169401522-169401697 - TSS,S
ENST00000260184.7/ENST00000511577.1/ENST00000505890.1/ENST00000514748.1/ENST00000512371.1/ENST00000515088.1/ENST00000513901.1
DDX60LDEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like
chr4_-_185709802 1.65 1.58 7.86E-03 chr4:185709802-185709889 - 5UTR_inner_exon,S
ENST00000454703.2/ENST00000437665.3 ACSL1
acyl-CoA synthetase long-chain family member 1
chr4_-_185747065 0.61 7.81 6.06E-03 chr4:185747065-185747259 - TSS,SENST00000281455.2/ENST00000507295.1/ENST00000504900.1
ACSL1acyl-CoA synthetase long-chain family member 1
chr4_-_38858350 0.66 5.19 1.55E-02 chr4:38858350-38858530 - TSS,S
ENST00000506146.1/ENST00000436693.2/ENST00000508254.1/ENST00000514655.1
TLR1 toll-like receptor 1
chr4_-_70626248 0.47 6.26 1.32E-02 chr4:70626248-70626448 - TSS,S ENST00000310613.2/ENST00000510821.1 SULT1B1 sulfotransferase family,
cytosolic, 1B, member 1
chr4_-_74702691 1.08 0.85 8.01E-02 chr4:74702691-74702888 - TSSregion500,AS ENST00000503446.1 CXCL6 chemokine (C-X-C motif) ligand 6
chr4_-_74740149 1.16 1.10 8.83E-02 chr4:74740149-74740260 - intergenic intergenic NA NAchr4_-_78742997 -1.43 0.35 1.86E-02 chr4:78742997-78743113 - intergenic intergenic NA NAchr4_-_84010497 -1.15 1.88 4.99E-02 chr4:84010497-84010598 - intergenic intergenic NA NA
chr4_-_85887749 0.80 4.55 1.06E-03 chr4:85887749-85887912 - TSSregion500,S
ENST00000322366.6/ENST00000295888.4/ENST00000509172.1/ENST00000502713.1
WDFY3 WD repeat and FYVE domain containing 3
chr5_+_115898212 -0.38 6.10 7.31E-02 chr5:115898212-115898282 + TSS,S ENST00000478778.1 CTB-118N6.1
chr5_+_118728528 1.03 2.56 6.10E-02 chr5:118728528-118728687 + 5UTR_last_exon,S ENST00000388882.5 TNFAIP8 tumor necrosis factor, alpha-induced protein 8
107107
Persson et al.
chr5_+_121684078 -0.84 2.90 4.95E-02 chr5:121684078-121684093 + 5UTR_first_intron,S
ENST00000542191.1/ENST00000510658.1/ENST00000261368.8/ENST00000512385.1/ENST00000379533.2/ENST00000379536.2/ENST00000379538.3/ENST00000261367.7/ENST00000509023.1/ENST00000414317.2/ENST00000508017.1/ENST00000447854.1/ENST00000514467.1/ENST00000506272.1/ENST00000508681.1
SNCAIP synuclein, alpha interacting protein
chr5_+_133474633 1.53 0.61 4.02E-02 chr5:133474633-133474707 + TSSregion500,S ENST00000522561.1 TCF7 transcription factor 7 (T-cell specific, HMG-box)
chr5_+_133562013 -0.96 0.65 8.17E-02 chr5:133562013-133562139 + TSSregion500,ASENST00000519718.1/ENST00000481195.1/ENST00000231504.5
SKP1 S-phase kinase-associated protein 1
chr5_+_133889496 -1.78 -0.45 5.36E-02 chr5:133889496-133889505 + CDS_or_noncoding_inner_intron,S
ENST00000413974.2/ENST00000448712.2/ENST00000282605.4/ENST00000361895.2/ENST00000432594.1/ENST00000402835.1/ENST00000395003.1/ENST00000431355.1/ENST00000453515.1
PHF15 PHD finger protein 15
chr5_+_135382538 1.05 1.54 4.84E-02 chr5:135382538-135382650 + TSSregion500,S ENST00000508767.1/ENST00000509749.1 TGFBI
transforming growth factor, beta-induced, 68kDa
chr5_+_137676863 0.84 1.72 5.83E-02 chr5:137676863-137677048 + TSS,S ENST00000505136.1 FAM53C family with sequence similarity 53, member C
chr5_+_137680511 0.92 1.15 8.85E-02 chr5:137680511-137680668 + CDS_or_noncoding_inner_exon,S
ENST00000434981.2/ENST00000239906.5 FAM53C family with sequence
similarity 53, member C
chr5_+_139497815 -1.83 -0.98 6.65E-02 chr5:139497815-139497989 + intergenic intergenic NA NA
chr5_+_141307717 1.54 -0.18 4.02E-02 chr5:141307717-141307831 + CDS_or_noncoding_inner_exon,S
ENST00000432126.2/ENST00000194118.4/ENST00000508751.1
KIAA0141 KIAA0141
108108
Persson et al.
chr5_+_142149936 0.57 6.82 6.06E-03 chr5:142149936-142150116 + TSS,S ENST00000378004.3/ENST00000274498.4 ARHGAP26 Rho GTPase activating
protein 26
chr5_+_142548033 1.30 1.13 9.65E-03 chr5:142548033-142548044 + CDS_or_noncoding_first_intron,S ENST00000486650.1 ARHGAP26 Rho GTPase activating
protein 26
chr5_+_151186143 -2.34 -0.77 6.06E-03 chr5:151186143-151186332 + 3UTR_last_exon,S ENST00000394123.3 G3BP1GTPase activating protein (SH3 domain) binding protein 1
chr5_+_156712333 1.32 0.73 6.11E-02 chr5:156712333-156712461 + TSS,S ENST00000517753.1/ENST00000541131.1 CYFIP2 cytoplasmic FMR1
interacting protein 2
chr5_+_169064213 0.37 7.69 7.43E-02 chr5:169064213-169064346 + TSS,S
ENST00000343291.4/ENST00000256935.8/ENST00000524185.1/ENST00000522138.1
DOCK2 dedicator of cytokinesis 2
chr5_+_17217686 0.59 9.02 2.80E-03 chr5:17217686-17217882 + TSS,S ENST00000447228.2 BASP1brain abundant, membrane attached signal protein 1
chr5_+_172378236 1.75 0.46 4.29E-03 chr5:172378236-172378322 + CDS_or_noncoding_last_exon,S ENST00000523215.1 ERGIC1
endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
chr5_+_172421767 1.40 0.62 4.97E-02 chr5:172421767-172421784 + CDS_or_noncoding_inner_exon,S
ENST00000519374.1/ENST00000519911.1/ENST00000517669.1
ATP6V0E1ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1
chr5_+_17275851 0.93 3.56 6.73E-03 chr5:17275851-17275993 + CDS_or_noncoding_last_exon,S
ENST00000322611.3/ENST00000447228.2 BASP1
brain abundant, membrane attached signal protein 1
chr5_+_173315944 0.97 2.11 6.73E-02 chr5:173315944-173316023 + TSSregion500,S ENST00000520867.1/ENST00000334035.5 CPEB4
cytoplasmic polyadenylation element binding protein 4
chr5_+_17444094 0.53 4.25 6.99E-02 chr5:17444094-17444198 + TSS,S ENST00000503267.1/ENST00000504998.1 RP11-321E2.4
chr5_+_179155766 -1.26 1.45 6.41E-02 chr5:179155766-179155922 + CDS_or_noncoding_last_exon,S ENST00000376953.4 CANX calnexin
chr5_+_179157241 -1.39 0.64 7.25E-02 chr5:179157241-179157294 + 3UTR_last_exon,S ENST00000247461.4/ENST00000452673.2 CANX calnexin
chr5_+_180336524 0.48 5.00 4.23E-02 chr5:180336524-180336631 + TSS,S
ENST00000505126.1/ENST00000533815.2/ENST00000514448.1/ENST00000513442.1
BTNL8 butyrophilin-like 8
109109
Persson et al.
chr5_+_25909587 1.16 1.60 8.56E-02 chr5:25909587-25909698 + TSS,S ENST00000511640.1 MSNP1 moesin pseudogene 1
chr5_+_60659450 1.26 0.39 8.56E-02 chr5:60659450-60659626 + CDS_or_noncoding_first_intron,S ENST00000252744.5 ZSWIM6 zinc finger, SWIM-type
containing 6
chr5_+_61648407 1.27 1.44 7.09E-02 chr5:61648407-61648540 + CDS_or_noncoding_inner_exon,S
ENST00000401507.3/ENST00000381103.2/ENST00000514082.1/ENST00000407818.3/ENST00000506857.1
KIF2A kinesin heavy chain member 2A
chr5_+_67589169 -1.60 0.01 6.78E-02 chr5:67589169-67589283 + CDS_or_noncoding_inner_exon,S
ENST00000521381.1/ENST00000521657.1/ENST00000396611.1/ENST00000274335.5/ENST00000320694.8/ENST00000521409.1/ENST00000336483.5/ENST00000519025.1/ENST00000523872.1/ENST00000518813.1/ENST00000520550.1
PIK3R1phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
chr5_+_75698844 0.64 4.83 2.34E-02 chr5:75698844-75698883 + TSSregion500,S ENST00000274364.6/ENST00000379730.3 IQGAP2
IQ motif containing GTPase activating protein 2
chr5_+_77080624 -1.01 4.48 8.31E-02 chr5:77080624-77080630 + TSSregion500,S ENST00000515712.1 CTD-2309M13.1 NA
chr5_+_79703805 0.38 5.08 6.24E-02 chr5:79703805-79703925 + TSS,S
ENST00000338008.5/ENST00000510158.1/ENST00000505560.1/ENST00000509562.1/ENST00000512558.1/ENST00000510995.1
ZFYVE16 zinc finger, FYVE domain containing 16
chr5_+_82789616 2.13 -0.54 1.47E-02 chr5:82789616-82789692 + CDS_or_noncoding_inner_exon,S
ENST00000265077.3/ENST00000343200.5/ENST00000342785.4/ENST00000512590.2/ENST00000502527.2/ENST00000513960.1/ENST00000513984.1
VCAN versican
110110
Persson et al.
chr5_-_131132613 0.44 4.96 7.80E-02 chr5:131132613-131132787 - TSS,S
ENST00000514667.1/ENST00000307968.7/ENST00000307954.8/ENST00000544351.1/ENST00000510461.1/ENST00000511848.1
FNIP1 folliculin interacting protein 1
chr5_-_131762256 0.49 5.48 5.52E-02 chr5:131762256-131762442 - TSS,S ENST00000454380.1 AC116366.5
chr5_-_139971628 0.44 5.09 9.50E-02 chr5:139971628-139971762 - TSS,S ENST00000507279.1 APBB3
amyloid beta (A4) precursor protein-binding, family B, member 3
chr5_-_141061717 0.47 5.25 4.30E-02 chr5:141061717-141061832 - TSS,S ENST00000508305.1/ENST00000239440.4 ARAP3
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
chr5_-_149784263 1.07 3.35 5.22E-02 chr5:149784263-149784339 - CDS_or_noncoding_inner_exon,S
ENST00000353334.6/ENST00000518797.1/ENST00000009530.7
CD74
CD74 molecule, major histocompatibility complex, class II invariant chain
chr5_-_149786740 1.03 4.97 6.88E-02 chr5:149786740-149786894 - CDS_or_noncoding_inner_exon,S
ENST00000377795.3/ENST00000353334.6/ENST00000518797.1/ENST00000524315.1/ENST00000009530.7/ENST00000523208.1/ENST00000522246.1/ENST00000517752.1/ENST00000523836.1/ENST00000517791.1/ENST00000522153.1
CD74
CD74 molecule, major histocompatibility complex, class II invariant chain
chr5_-_149792226 1.22 0.93 5.01E-02 chr5:149792226-149792230 - TSSregion500,S
ENST00000517752.1/ENST00000523836.1/ENST00000517791.1/ENST00000522153.1
CD74
CD74 molecule, major histocompatibility complex, class II invariant chain
chr5_-_150076132 2.03 -0.63 5.69E-02 chr5:150076132-150076271 - CDS_or_noncoding_inner_exon,S
ENST00000540000.1/ENST00000199814.4/ENST00000447771.2/ENST00000518917.1/ENST00000522469.1
RBM22 RNA binding motif protein 22
chr5_-_171583622 0.82 2.43 4.94E-02 chr5:171583622-171583805 - TSS,S ENST00000519710.1 STK10 serine/threonine kinase 10
111111
Persson et al.
chr5_-_179467468 1.17 0.87 9.44E-02 chr5:179467468-179467649 - CDS_or_noncoding_inner_exon,S
ENST00000522208.1/ENST00000521389.1/ENST00000261947.4/ENST00000520911.1
RNF130 ring finger protein 130
chr5_-_180668523 0.98 3.03 2.75E-02 chr5:180668523-180668647 - TSS,S ENST00000504128.1 GNB2L1
guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
chr5_-_39202933 0.90 3.03 2.34E-02 chr5:39202933-39202960 - CDS_or_noncoding_first_exon,S ENST00000515010.1 FYB FYN binding protein
chr5_-_39219608 0.75 2.60 5.37E-02 chr5:39219608-39219610 - TSSregion500,S
ENST00000351578.6/ENST00000505428.1/ENST00000542542.1/ENST00000506557.1/ENST00000509072.1/ENST00000504542.1
FYB FYN binding protein
chr5_-_39219629 0.42 7.59 6.81E-02 chr5:39219629-39219767 - TSS,S
ENST00000351578.6/ENST00000505428.1/ENST00000542542.1/ENST00000506557.1/ENST00000509072.1/ENST00000504542.1
FYB FYN binding protein
chr5_-_90610188 0.42 5.84 8.93E-02 chr5:90610188-90610335 - TSS,S ENST00000511918.1/ENST00000513626.1
RP11-213H15.3
chr5_-_93954214 0.60 3.36 6.30E-02 chr5:93954214-93954375 - TSS,SENST00000513200.2/ENST00000312498.7/ENST00000329378.6
KIAA0825 KIAA0825
chr5_-_94417257 0.38 6.54 3.58E-02 chr5:94417257-94417377 - TSS,S
ENST00000429576.2/ENST00000508509.1/ENST00000512425.1/ENST00000505208.1/ENST00000510732.1/ENST00000513857.1
MCTP1 multiple C2 domains, transmembrane 1
chr6_+_105901414 -1.01 1.94 6.61E-02 chr6:105901414-105901607 + intergenic intergenic NA NA
chr6_+_114178493 0.33 8.63 8.33E-02 chr6:114178493-114178688 + TSS,S ENST00000368635.4 MARCKSmyristoylated alanine-rich protein kinase C substrate
chr6_+_114178781 0.59 3.46 7.82E-02 chr6:114178781-114178932 + TSSregion500,S ENST00000368635.4 MARCKSmyristoylated alanine-rich protein kinase C substrate
112112
Persson et al.
chr6_+_116691961 0.55 5.69 2.45E-02 chr6:116691961-116692148 + TSS,S ENST00000359564.2 DSE dermatan sulfate epimerase
chr6_+_12012162 0.55 3.53 7.80E-02 chr6:12012162-12012261 + TSS,S ENST00000487103.1 HIVEP1
human immunodeficiency virus type I enhancer binding protein 1
chr6_+_12012514 1.08 0.10 5.37E-02 chr6:12012514-12012551 + TSSregion500,SENST00000379388.2/ENST00000442081.2/ENST00000478545.1
HIVEP1
human immunodeficiency virus type I enhancer binding protein 1
chr6_+_139456460 1.23 1.16 4.78E-02 chr6:139456460-139456510 + TSSregion500,S ENST00000367658.2 HECA headcase homolog (Drosophila)
chr6_+_139694684 -1.26 0.75 5.19E-02 chr6:139694684-139694833 + CDS_or_noncoding_first_exon,AS ENST00000392312.1 CITED2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
chr6_+_144606710 0.70 3.91 1.04E-02 chr6:144606710-144606829 + TSSregion500,S ENST00000433557.1 UTRN utrophin
chr6_+_147525069 0.53 3.24 6.24E-02 chr6:147525069-147525116 + TSSregion500,SENST00000367479.2/ENST00000546097.1/ENST00000367481.3
STXBP5 syntaxin binding protein 5 (tomosyn)
chr6_+_148736489 -0.88 5.56 1.93E-02 chr6:148736489-148736504 + CDS_or_noncoding_inner_intron,S
ENST00000367469.1/ENST00000367467.3/ENST00000392284.5
SASH1 SAM and SH3 domain containing 1
chr6_+_15246181 0.45 7.40 2.75E-02 chr6:15246181-15246332 + TSSregion500,S ENST00000341776.2 JARID2 jumonji, AT rich interactive domain 2
chr6_+_155542345 1.09 1.21 6.63E-02 chr6:155542345-155542540 + 5UTR_first_intron,S ENST00000275246.7 TIAM2
T-cell lymphoma invasion and metastasis 2
chr6_+_159074990 -1.38 0.84 9.74E-02 chr6:159074990-159075106 + 5UTR_inner_intron,S
ENST00000360448.3/ENST00000543689.1 SYTL3 synaptotagmin-like 3
chr6_+_160390062 0.47 8.09 1.02E-02 chr6:160390062-160390200 + TSS,S ENST00000356956.1 IGF2R insulin-like growth factor 2 receptor
chr6_+_160461588 0.80 1.62 7.35E-02 chr6:160461588-160461759 + CDS_or_noncoding_inner_exon,S ENST00000356956.1 IGF2R insulin-like growth factor
2 receptor
chr6_+_17609219 -1.42 -0.20 6.10E-02 chr6:17609219-17609288 + 3UTR_last_exon,S ENST00000259963.3 FAM8A1 family with sequence similarity 8, member A1
chr6_+_18399703 1.85 -0.47 3.33E-02 chr6:18399703-18399883 + 5UTR_inner_exon,S ENST00000259939.3 RNF144B ring finger protein 144B
chr6_+_26020670 -0.63 5.83 5.64E-02 chr6:26020670-26020734 + TSS,S ENST00000357647.3 HIST1H3A histone cluster 1, H3achr6_+_26044171 -0.66 2.36 8.84E-02 chr6:26044171-26044191 + TSSregion500,S ENST00000454320.1 U91328.2chr6_+_26204717 -0.35 9.24 6.58E-02 chr6:26204717-26204861 + TSS,S ENST00000360441.4 HIST1H4E histone cluster 1, H4echr6_+_26271788 -1.66 -0.51 8.73E-02 chr6:26271788-26271880 + TSSregion500,AS ENST00000305910.3 HIST1H3G histone cluster 1, H3gchr6_+_27805220 -0.72 2.74 6.19E-02 chr6:27805220-27805336 + upstream1000,S ENST00000449538.2 HIST1H2BN histone cluster 1, H2bn
113113
Persson et al.
chr6_+_29932798 1.45 1.23 6.27E-02 chr6:29932798-29932885 + intergenic intergenic NA NA
chr6_+_3000060 0.66 5.62 3.57E-02 chr6:3000060-3000182 + TSS,S ENST00000397717.2 NQO2NAD(P)H dehydrogenase, quinone 2
chr6_+_3000222 1.54 -0.24 1.68E-02 chr6:3000222-3000274 + TSS,SENST00000380441.1/ENST00000380455.4/ENST00000380454.4
NQO2NAD(P)H dehydrogenase, quinone 2
chr6_+_32825030 1.29 0.18 8.59E-02 chr6:32825030-32825137 + CDS_or_noncoding_inner_exon,S
ENST00000395330.1/ENST00000414474.1/ENST00000374859.2/ENST00000464863.1/ENST00000467593.1
PSMB9
proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2)
chr6_+_42531691 0.32 6.90 7.94E-02 chr6:42531691-42531771 + TSSregion500,SENST00000372899.1/ENST00000372901.1/ENST00000372903.2
UBR2ubiquitin protein ligase E3 component n-recognin 2
chr6_+_42531905 0.41 5.13 7.48E-02 chr6:42531905-42531985 + TSSregion500,SENST00000372899.1/ENST00000372901.1/ENST00000372903.2
UBR2ubiquitin protein ligase E3 component n-recognin 2
chr6_+_42906582 1.07 1.30 2.30E-02 chr6:42906582-42906615 + 3UTR_last_exon,S ENST00000372836.4/ENST00000394142.3 CNPY3 canopy 3 homolog
(zebrafish)
chr6_+_80410434 -1.77 -0.35 1.95E-02 chr6:80410434-80410532 + 3UTR_last_exon,S ENST00000369838.4 SH3BGRL2SH3 domain binding glutamic acid-rich protein like 2
chr6_+_84569325 0.38 7.44 1.94E-02 chr6:84569325-84569466 + TSS,S ENST00000369681.3/ENST00000369679.4 CYB5R4 cytochrome b5
reductase 4
chr6_+_89790868 2.14 1.33 1.49E-02 chr6:89790868-89790877 + 5UTR_last_intron,S ENST00000369472.1 PNRC1 proline-rich nuclear
receptor coactivator 1
chr6_+_89793470 0.78 2.57 6.40E-02 chr6:89793470-89793580 + 5UTR_last_exon,S ENST00000369472.1/ENST00000354922.2 PNRC1 proline-rich nuclear
receptor coactivator 1
chr6_-_111045018 1.49 0.11 8.25E-02 chr6:111045018-111045064 - CDS_or_noncoding_first_intron,S
ENST00000463016.1/ENST00000460913.1 CDK19 cyclin-dependent kinase
19
chr6_-_111136340 0.94 1.13 3.57E-02 chr6:111136340-111136402 - TSSregion500,S
ENST00000368911.3/ENST00000457688.1/ENST00000460913.1/ENST00000468997.1
CDK19 cyclin-dependent kinase 19
114114
Persson et al.
chr6_-_11382405 0.39 7.91 2.18E-02 chr6:11382405-11382593 - TSS,S
ENST00000448183.2/ENST00000504387.1/ENST00000513989.1/ENST00000397378.3/ENST00000508546.1/ENST00000468612.1/ENST00000512665.1/ENST00000504634.1/ENST00000459670.2/ENST00000514660.1/ENST00000461055.2/ENST00000508800.1
NEDD9
neural precursor cell expressed, developmentally down-regulated 9
chr6_-_133055790 0.75 5.57 2.50E-03 chr6:133055790-133055913 - TSS,S
ENST00000367927.4/ENST00000425515.1/ENST00000207771.3/ENST00000414302.2/ENST00000423615.2/ENST00000427187.2/ENST00000519686.2/ENST00000275223.3/ENST00000392393.3/ENST00000450865.2/ENST00000392394.2/ENST00000509351.1/ENST00000417437.2/ENST00000448644.1
VNN3 vanin 3
chr6_-_133072446 1.28 1.11 4.89E-02 chr6:133072446-133072595 - CDS_or_noncoding_inner_exon,S
ENST00000326499.6/ENST00000525270.1 VNN2 vanin 2
chr6_-_137113491 0.54 5.33 2.02E-02 chr6:137113491-137113690 - TSS,S ENST00000359015.4/ENST00000367768.3 MAP3K5
mitogen-activated protein kinase kinase kinase 5
chr6_-_160113764 1.06 4.48 1.40E-03 chr6:160113764-160113904 - TSSregion500,S ENST00000540491.1 SOD2 superoxide dismutase 2, mitochondrial
chr6_-_167369951 0.53 8.47 4.15E-02 chr6:167369951-167370100 - TSS,S
ENST00000366855.6/ENST00000421787.1/ENST00000428859.2/ENST00000028008.5/ENST00000310843.5/ENST00000425007.2
RNASET2 ribonuclease T2
chr6_-_167383112 2.26 -0.15 4.89E-02 chr6:167383112-167383308 - CDS_or_noncoding_last_exon,S ENST00000444102.1 RP1-167A14.2
115115
Persson et al.
chr6_-_16761542 0.46 5.99 2.51E-02 chr6:16761542-16761737 - TSS,S
ENST00000244769.3/ENST00000436367.1/ENST00000450222.1/ENST00000344707.2/ENST00000296858.5/ENST00000473388.1/ENST00000483954.1/ENST00000467008.1/ENST00000498374.1/ENST00000492857.1/ENST00000479680.1
ATXN1Ataxin 1, isoform CRA_a; Uncharacterized protein
chr6_-_17987804 0.67 4.61 1.40E-02 chr6:17987804-17987919 - TSS,S ENST00000502704.1 KIF13A kinesin family member 13A
chr6_-_24646261 1.17 1.89 2.51E-02 chr6:24646261-24646457 - TSS,SENST00000537886.1/ENST00000535378.1/ENST00000378214.3
KIAA0319 KIAA0319
chr6_-_26235187 -0.47 4.78 7.87E-02 chr6:26235187-26235254 - TSS,S ENST00000244534.5 HIST1H1D histone cluster 1, H1dchr6_-_27805997 -0.52 5.71 7.43E-02 chr6:27805997-27806196 - TSS,S ENST00000330180.2 HIST1H2AK histone cluster 1, H2ak
chr6_-_2889093 -1.18 1.97 2.99E-02 chr6:2889093-2889290 - 3UTR_last_exon,S ENST00000380698.4 SERPINB9serpin peptidase inhibitor, clade B (ovalbumin), member 9
chr6_-_32093923 1.41 0.27 1.62E-02 chr6:32093923-32094028 - CDS_or_noncoding_inner_exon,S
ENST00000375203.3/ENST00000375201.4/ENST00000495579.1/ENST00000485314.1
ATF6B activating transcription factor 6 beta
chr6_-_33271952 -1.48 -0.17 9.23E-02 chr6:33271952-33272002 - CDS_or_noncoding_inner_exon,S
ENST00000434618.2/ENST00000475304.1/ENST00000489157.1/ENST00000426633.2/ENST00000456592.2
TAPBP TAP binding protein (tapasin)
chr6_-_33281055 1.69 -0.14 2.60E-02 chr6:33281055-33281061 - CDS_or_noncoding_inner_exon,S
ENST00000434618.2/ENST00000475304.1/ENST00000426633.2/ENST00000456592.2/ENST00000467025.1/ENST00000480730.1/ENST00000437116.2
TAPBP TAP binding protein (tapasin)
chr6_-_33281254 0.49 5.53 1.13E-02 chr6:33281254-33281345 - CDS_or_noncoding_first_intron,S
ENST00000467025.1/ENST00000476333.1 TAPBP TAP binding protein
(tapasin)
116116
Persson et al.
chr6_-_35888789 0.51 6.38 7.24E-03 chr6:35888789-35888948 - TSS,S
ENST00000361690.3/ENST00000423325.2/ENST00000510290.1/ENST00000512445.1/ENST00000507909.1/ENST00000346162.6/ENST00000513367.1
SRPK1 SRSF protein kinase 1
chr6_-_35992307 1.19 1.47 8.31E-03 chr6:35992307-35992479 - TSS,S ENST00000355574.2 SLC26A8 solute carrier family 26, member 8
chr7_+_112063143 0.51 5.40 6.66E-02 chr7:112063143-112063275 + TSS,S ENST00000005558.4 IFRD1interferon-related developmental regulator 1
chr7_+_115898163 -1.05 2.07 3.50E-02 chr7:115898163-115898218 + 3UTR_last_exon,SENST00000358204.4/ENST00000257721.7/ENST00000393481.2
TES testis derived transcript (3 LIM domains)
chr7_+_116558729 -1.45 0.72 7.48E-02 chr7:116558729-116558929 + 3UTR_last_exon,S ENST00000361183.2 CAPZA2capping protein (actin filament) muscle Z-line, alpha 2
chr7_+_130794778 0.74 2.21 5.09E-02 chr7:130794778-130794894 + TSS,S ENST00000421797.2 MKLN1muskelin 1, intracellular mediator containing kelch motifs
chr7_+_131012587 0.36 6.70 4.11E-02 chr7:131012587-131012732 + TSS,S
ENST00000446815.1/ENST00000352689.6/ENST00000388758.2/ENST00000458153.1/ENST00000494286.1/ENST00000494785.1
MKLN1muskelin 1, intracellular mediator containing kelch motifs
chr7_+_134346536 0.80 2.33 8.86E-02 chr7:134346536-134346661 + CDS_or_noncoding_inner_exon,S
ENST00000344924.3/ENST00000418040.1/ENST00000393132.2
BPGM 2,3-bisphosphoglycerate mutase
chr7_+_139649693 1.58 -0.52 6.27E-02 chr7:139649693-139649866 + CDS_or_noncoding_inner_intron,S
ENST00000425687.1/ENST00000263552.6/ENST00000336425.5/ENST00000436047.2/ENST00000414508.2/ENST00000416849.2/ENST00000448866.1/ENST00000458722.1/ENST00000411653.1/ENST00000462275.1
TBXAS1 thromboxane A synthase 1 (platelet)
117117
Persson et al.
chr7_+_141688603 0.70 7.09 5.98E-03 chr7:141688603-141688776 + 5UTR_inner_intron,S ENST00000465654.1 MGAM maltase-glucoamylase
(alpha-glucosidase)
chr7_+_141718992 1.82 0.99 5.23E-03 chr7:141718992-141719100 + TSS,S ENST00000548812.1 MGAM maltase-glucoamylase (alpha-glucosidase)
chr7_+_143079400 0.84 3.62 2.60E-02 chr7:143079400-143079515 + TSSregion500,S ENST00000436448.1 ZYX zyxinchr7_+_143079964 0.88 3.81 6.06E-03 chr7:143079964-143080096 + TSS,S ENST00000446634.1 ZYX zyxinchr7_+_143080180 2.43 -0.49 4.06E-02 chr7:143080180-143080182 + TSSregion500,S ENST00000446634.1 ZYX zyxinchr7_+_143080281 1.52 1.03 5.99E-02 chr7:143080281-143080312 + TSSregion500,S ENST00000446634.1 ZYX zyxin
chr7_+_143087667 1.06 1.28 4.89E-02 chr7:143087667-143087784 + CDS_or_noncoding_last_exon,S
ENST00000322764.5/ENST00000449423.2/ENST00000354434.4/ENST00000392910.2
ZYX zyxin
chr7_+_150233616 -1.33 0.44 2.67E-02 chr7:150233616-150233622 + intergenic intergenic NA NA
chr7_+_15276749 1.42 4.69 2.26E-04 chr7:15276749-15276943 + CDS_or_noncoding_last_intron,AS ENST00000342526.3 AGMO alkylglycerol
monooxygenase
chr7_+_27135684 0.51 5.54 5.52E-02 chr7:27135684-27135881 + TSS,SENST00000434063.3/ENST00000429611.3/ENST00000425358.2
HOTAIRM1HOXA transcript antisense RNA, myeloid-specific 1
chr7_+_28725711 0.50 7.72 3.47E-02 chr7:28725711-28725788 + TSS,S ENST00000468391.1/ENST00000484383.1 CREB5
cAMP responsive element binding protein 5
chr7_+_28843816 0.96 3.62 3.33E-03 chr7:28843816-28843978 + CDS_or_noncoding_inner_exon,S
ENST00000396299.2/ENST00000357727.2/ENST00000396300.2/ENST00000409603.1/ENST00000426500.1/ENST00000396298.2
CREB5cAMP responsive element binding protein 5
chr7_+_44684944 1.55 -0.69 9.19E-02 chr7:44684944-44685080 + CDS_or_noncoding_inner_exon,S
ENST00000443864.2/ENST00000447398.1/ENST00000449767.1/ENST00000419661.1/ENST00000444676.1/ENST00000222673.5/ENST00000543843.1
OGDH
oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
118118
Persson et al.
chr7_+_50468327 -1.50 0.65 5.68E-02 chr7:50468327-50468413 + 3UTR_last_exon,S
ENST00000440768.2/ENST00000359197.5/ENST00000357364.4/ENST00000349824.4/ENST00000343574.5/ENST00000346667.4/ENST00000331340.3/ENST00000438033.1/ENST00000439701.1
IKZF1 IKAROS family zinc finger 1 (Ikaros)
chr7_+_56019485 -0.52 3.30 6.10E-02 chr7:56019485-56019643 + TSS,S ENST00000446692.1/ENST00000285298.4 GBAS glioblastoma amplified
sequence
chr7_+_77166493 0.43 5.24 6.61E-02 chr7:77166493-77166664 + TSS,S ENST00000248594.6 PTPN12protein tyrosine phosphatase, non-receptor type 12
chr7_+_87785848 -1.04 0.78 9.41E-02 chr7:87785848-87785858 + CDS_or_noncoding_inner_intron,S
ENST00000398204.4/ENST00000398201.4/ENST00000265727.7/ENST00000315984.7/ENST00000398209.3/ENST00000398203.3
ADAM22 ADAM metallopeptidase domain 22
chr7_+_90225935 1.19 2.87 4.38E-04 chr7:90225935-90226005 + TSSregion500,S ENST00000380050.3 CDK14 cyclin-dependent kinase 14
chr7_+_97736149 0.48 5.13 6.39E-02 chr7:97736149-97736291 + TSS,S ENST00000297293.5 LMTK2 lemur tyrosine kinase 2
chr7_+_98984295 1.31 1.25 4.31E-02 chr7:98984295-98984379 + TSS,S ENST00000461486.1 ARPC1Bactin related protein 2/3 complex, subunit 1B, 41kDa
chr7_+_99528236 -1.62 -0.68 9.37E-02 chr7:99528236-99528242 + CDS_or_noncoding_first_intron,S ENST00000456499.1 RP4-604G5.1
chr7_-_105029224 0.45 6.36 6.61E-02 chr7:105029224-105029418 - TSS,SENST00000393651.3/ENST00000460391.1/ENST00000465112.1
SRPK2 SRSF protein kinase 2
chr7_-_105925333 0.79 6.53 1.66E-03 chr7:105925333-105925346 - TSSregion500,S
ENST00000222553.3/ENST00000354289.4/ENST00000491027.1/ENST00000484527.1/ENST00000393618.1/ENST00000441045.1/ENST00000486949.1/ENST00000489358.1/ENST00000489732.1
NAMPTnicotinamide phosphoribosyltransferase
119119
Persson et al.
chr7_-_105925353 0.81 7.19 9.20E-04 chr7:105925353-105925355 - TSSregion500,S
ENST00000222553.3/ENST00000354289.4/ENST00000491027.1/ENST00000484527.1/ENST00000393618.1/ENST00000441045.1/ENST00000486949.1/ENST00000489358.1/ENST00000489732.1
NAMPTnicotinamide phosphoribosyltransferase
chr7_-_105925364 0.50 8.96 2.02E-02 chr7:105925364-105925459 - TSS,S
ENST00000354289.4/ENST00000491027.1/ENST00000393618.1/ENST00000441045.1/ENST00000489358.1/ENST00000489732.1
NAMPTnicotinamide phosphoribosyltransferase
chr7_-_111846396 0.89 4.65 1.62E-02 chr7:111846396-111846572 - TSS,SENST00000428084.1/ENST00000437633.1/ENST00000476846.1
DOCK4 dedicator of cytokinesis 4
chr7_-_130792748 0.49 5.83 5.92E-02 chr7:130792748-130792910 - TSS,S ENST00000423414.1/ENST00000429901.1 AC058791.2
chr7_-_130794642 0.67 2.92 6.02E-02 chr7:130794642-130794706 - TSSregion500,S ENST00000451786.1 AC058791.2
chr7_-_137563911 -1.38 0.76 3.93E-02 chr7:137563911-137564040 - CDS_or_noncoding_last_exon,S ENST00000417785.2 CREB3L2
cAMP responsive element binding protein 3-like 2
chr7_-_150930288 -1.67 -0.63 7.81E-02 chr7:150930288-150930381 - 5UTR_first_exon,AS
ENST00000377851.2/ENST00000035307.2 CHPF2 chondroitin polymerizing
factor 2
chr7_-_152133060 0.67 2.42 7.32E-02 chr7:152133060-152133123 - TSS,SENST00000262189.6/ENST00000558084.1/ENST00000355193.2
MLL3myeloid/lymphoid or mixed-lineage leukemia 3
120120
Persson et al.
chr7_-_17980042 0.37 5.87 4.15E-02 chr7:17980042-17980146 - TSS,S
ENST00000409389.1/ENST00000428135.2/ENST00000409076.2/ENST00000242044.12/ENST00000444712.1/ENST00000409604.1/ENST00000482558.1/ENST00000474067.1/ENST00000475800.1/ENST00000471744.1
SNX13 sorting nexin 13
chr7_-_26903210 1.33 1.18 1.12E-02 chr7:26903210-26903291 - CDS_or_noncoding_first_intron,S
ENST00000345317.2/ENST00000497511.1/ENST00000481204.1/ENST00000487720.1
SKAP2 src kinase associated phosphoprotein 2
chr7_-_26904058 0.51 7.29 6.73E-03 chr7:26904058-26904257 - TSS,S ENST00000497511.1/ENST00000487720.1 SKAP2 src kinase associated
phosphoprotein 2
chr7_-_36639590 1.10 1.44 5.75E-02 chr7:36639590-36639753 - TSS,S ENST00000449672.1 AOAH-IT1 AOAH intronic transcript 1 (non-protein coding)
chr7_-_38339823 -0.51 5.19 6.39E-02 chr7:38339823-38339996 - TSS,S ENST00000390341.2 TRGV10T cell receptor gamma variable 10 (non-functional)
chr7_-_5463173 1.03 0.38 9.74E-02 chr7:5463173-5463221 - TSS,S
ENST00000399537.4/ENST00000430969.1/ENST00000399544.3/ENST00000327499.4
TNRC18 trinucleotide repeat containing 18
chr7_-_5567118 -0.91 3.02 4.89E-02 chr7:5567118-5567188 - CDS_or_noncoding_last_exon,S
ENST00000464611.1/ENST00000462494.1 ACTB actin, beta
chr7_-_64467002 0.38 6.40 4.89E-02 chr7:64467002-64467123 - TSS,S
ENST00000394323.2/ENST00000487644.1/ENST00000528878.1/ENST00000535538.1
ERV3-1 endogenous retrovirus group 3, member 1
chr7_-_76828893 0.82 2.64 6.17E-02 chr7:76828893-76828955 - CDS_or_noncoding_first_exon,S ENST00000248598.5 FGL2 fibrinogen-like 2
121121
Persson et al.
chr8_+_100025062 1.17 0.53 6.25E-02 chr8:100025062-100025143 + TSSregion500,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_100025274 0.58 5.26 1.06E-02 chr8:100025274-100025332 + TSSregion500,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_100108531 1.41 0.31 4.89E-02 chr8:100108531-100108654 + CDS_or_noncoding_inner_exon,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_124780664 0.49 6.30 6.70E-03 chr8:124780664-124780813 + TSS,SENST00000521166.1/ENST00000334705.7/ENST00000395537.3
FAM91A1 family with sequence similarity 91, member A1
chr8_+_131218744 0.63 3.13 7.80E-02 chr8:131218744-131218916 + 5UTR_inner_intron,AS ENST00000520342.1 ASAP1
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
chr8_+_133787556 0.50 5.98 4.65E-02 chr8:133787556-133787752 + TSS,S
ENST00000395383.1/ENST00000361997.5/ENST00000395386.2/ENST00000315808.10/ENST00000337920.4/ENST00000395379.1/ENST00000485595.1
PHF20L1 PHD finger protein 20-like 1
122122
Persson et al.
chr8_+_133787980 1.64 0.07 3.75E-02 chr8:133787980-133788040 + 5UTR_first_intron,S
ENST00000395383.1/ENST00000361997.5/ENST00000395386.2/ENST00000315808.10/ENST00000337920.4/ENST00000395376.1/ENST00000395382.3/ENST00000220847.7/ENST00000395379.1
PHF20L1 PHD finger protein 20-like 1
chr8_+_142726317 -1.43 -0.14 4.82E-02 chr8:142726317-142726327 + intergenic intergenic NA NA
chr8_+_20068099 1.76 -0.66 5.34E-02 chr8:20068099-20068130 + CDS_or_noncoding_inner_exon,S
ENST00000276390.2/ENST00000542368.1/ENST00000519667.1/ENST00000523482.1
ATP6V1B2ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2
chr8_+_22974139 1.39 0.69 5.34E-02 chr8:22974139-22974242 + CDS_or_noncoding_inner_exon,S ENST00000544885.1 TNFRSF10C
tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain
chr8_+_22974440 0.90 3.11 2.50E-02 chr8:22974440-22974628 + CDS_or_noncoding_inner_exon,S ENST00000544885.1 TNFRSF10C
tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain
chr8_+_23399094 0.57 3.94 8.56E-02 chr8:23399094-23399233 + TSS,S ENST00000520949.1 SLC25A37solute carrier family 25 (mitochondrial iron transporter), member 37
chr8_+_23424071 -0.74 3.85 6.46E-02 chr8:23424071-23424155 + TSSregion500,S ENST00000522164.1/ENST00000521637.1 SLC25A37
solute carrier family 25 (mitochondrial iron transporter), member 37
chr8_+_23432452 -1.27 3.15 6.25E-02 chr8:23432452-23432621 + 3UTR_first_exon,S ENST00000399967.3 AC051642.1
chr8_+_25042178 0.57 6.66 2.84E-03 chr8:25042178-25042326 + TSS,S ENST00000410074.1/ENST00000481100.1 DOCK5 dedicator of cytokinesis
5
chr8_+_26268733 -0.87 3.91 8.61E-02 chr8:26268733-26268833 + 3UTR_last_exon,S ENST00000380629.2 BNIP3LBCL2/adenovirus E1B 19kDa interacting protein 3-like
chr8_+_26513318 -0.76 3.11 5.83E-02 chr8:26513318-26513328 + 3UTR_inner_exon,S ENST00000522745.1 DPYSL2 dihydropyrimidinase-like
2
chr8_+_38662940 0.42 5.06 7.81E-02 chr8:38662940-38663123 + TSS,S ENST00000524193.1/ENST00000522955.1 TACC1
transforming, acidic coiled-coil containing protein 1
123123
Persson et al.
chr8_+_52593946 -0.73 3.11 9.23E-02 chr8:52593946-52593959 + CDS_or_noncoding_first_intron,AS
ENST00000356297.4/ENST00000543296.1 PXDNL peroxidasin homolog
(Drosophila)-like
chr8_+_56792355 0.37 8.34 9.43E-02 chr8:56792355-56792466 + TSS,S ENST00000519728.1/ENST00000520220.1 LYN
v-yes-1 Yamaguchi sarcoma viral related oncogene homolog
chr8_+_59323857 0.35 5.75 4.55E-02 chr8:59323857-59324018 + TSS,SENST00000520732.1/ENST00000523409.1/ENST00000522978.1
UBXN2B UBX domain protein 2B
chr8_+_60224246 -0.89 2.31 9.45E-02 chr8:60224246-60224264 + intergenic intergenic NA NAchr8_+_7380136 -0.97 1.74 5.50E-02 chr8:7380136-7380152 + intergenic intergenic NA NA
chr8_+_97657450 0.43 6.35 1.05E-02 chr8:97657450-97657618 + TSS,SENST00000220763.5/ENST00000519900.1/ENST00000517742.1
PGCP NA
chr8_-_101733998 1.41 0.91 5.36E-02 chr8:101733998-101734059 - TSSregion500,S
ENST00000347137.5/ENST00000519004.1/ENST00000522387.1/ENST00000523555.1/ENST00000518196.1/ENST00000520142.1/ENST00000517921.1
PABPC1 poly(A) binding protein, cytoplasmic 1
chr8_-_131028646 0.41 8.20 3.19E-02 chr8:131028646-131028826 - TSS,S
ENST00000523509.1/ENST00000401979.2/ENST00000517654.1/ENST00000519020.1/ENST00000518167.1/ENST00000522361.1/ENST00000521223.1/ENST00000518285.1
FAM49B family with sequence similarity 49, member B
chr8_-_131370771 0.57 6.73 5.23E-03 chr8:131370771-131370919 - CDS_or_noncoding_first_intron,S
ENST00000357668.1/ENST00000343135.6 ASAP1
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
chr8_-_133772746 0.47 7.37 1.04E-02 chr8:133772746-133772920 - TSS,S
ENST00000523829.1/ENST00000377901.4/ENST00000356838.3/ENST00000522334.1/ENST00000519016.1/ENST00000519187.1/ENST00000519304.1/ENST00000517538.1
TMEM71 transmembrane protein 71
124124
Persson et al.
chr8_-_134087104 0.91 1.05 7.32E-02 chr8:134087104-134087110 - TSSregion500,S
ENST00000522432.1/ENST00000523224.1/ENST00000522002.1/ENST00000520106.1/ENST00000518594.1
SLA Src-like-adaptor
chr8_-_134087128 0.40 7.55 3.62E-02 chr8:134087128-134087311 - TSS,S
ENST00000522432.1/ENST00000523224.1/ENST00000522002.1/ENST00000520106.1/ENST00000518594.1
SLA Src-like-adaptor
chr8_-_135725247 1.13 3.15 6.97E-02 chr8:135725247-135725421 - TSS,SENST00000523924.1/ENST00000377838.3/ENST00000523243.1
ZFAT zinc finger and AT hook domain containing
chr8_-_144618450 2.22 -1.00 1.45E-02 chr8:144618450-144618600 - CDS_or_noncoding_inner_exon,S ENST00000262577.5 ZC3H3 zinc finger CCCH-type
containing 3
chr8_-_145115552 1.06 0.93 6.41E-02 chr8:145115552-145115657 - TSS,S ENST00000534424.1/ENST00000426825.1 OPLAH 5-oxoprolinase (ATP-
hydrolysing)
chr8_-_146012666 -1.18 -0.03 4.89E-02 chr8:146012666-146012744 - TSS,S
ENST00000449516.2/ENST00000527190.1/ENST00000343459.4/ENST00000429371.2/ENST00000534445.1/ENST00000527740.1
ZNF34 zinc finger protein 34
chr8_-_27941305 -0.85 1.97 6.46E-02 chr8:27941305-27941486 - TSS,SENST00000413272.2/ENST00000341513.6/ENST00000418860.1
C8ORF80 NA
chr8_-_48775161 0.70 4.41 3.36E-02 chr8:48775161-48775358 - CDS_or_noncoding_inner_intron,S
ENST00000314191.2/ENST00000338368.3/ENST00000523565.1/ENST00000518216.1
PRKDCprotein kinase, DNA-activated, catalytic polypeptide
chr8_-_62627045 0.91 4.21 7.16E-04 chr8:62627045-62627200 - TSS,S
ENST00000389213.5/ENST00000379454.4/ENST00000356457.5/ENST00000519234.1/ENST00000518068.1/ENST00000517856.1/ENST00000379449.5
ASPH aspartate beta-hydroxylase
125125
Persson et al.
chr8_-_9008120 0.41 5.36 8.19E-02 chr8:9008120-9008249 - TSS,S ENST00000310455.3 PPP1R3B protein phosphatase 1, regulatory subunit 3B
chr8_-_92052955 0.42 7.56 1.62E-02 chr8:92052955-92053127 - TSS,S
ENST00000520709.1/ENST00000518359.1/ENST00000520014.1/ENST00000518869.1
TMEM55A transmembrane protein 55A
chr8_-_99057735 -0.70 9.79 4.02E-02 chr8:99057735-99057818 - TSS,S
ENST00000521291.1/ENST00000396070.2/ENST00000518850.1/ENST00000287038.3/ENST00000523172.1/ENST00000518164.1/ENST00000517489.1/ENST00000520998.1/ENST00000521112.1
RPL30 ribosomal protein L30
chr9_+_120466540 0.43 7.97 3.36E-02 chr9:120466540-120466708 + TSS,SENST00000394487.4/ENST00000355622.6/ENST00000472304.1
TLR4 toll-like receptor 4
chr9_+_120470833 1.05 0.93 6.65E-02 chr9:120470833-120470959 + 5UTR_inner_exon,S ENST00000394487.4 TLR4 toll-like receptor 4
chr9_+_127020203 0.48 5.13 6.36E-02 chr9:127020203-127020323 + TSS,SENST00000373600.3/ENST00000373601.4/ENST00000320246.5
NEK6 NIMA-related kinase 6
chr9_+_127023630 0.77 3.38 5.49E-02 chr9:127023630-127023768 + TSS,S ENST00000373596.1/ENST00000425237.1 NEK6 NIMA-related kinase 6
chr9_+_132649842 -1.96 -0.54 8.41E-02 chr9:132649842-132649946 + CDS_or_noncoding_last_exon,AS ENST00000479142.1 FNBP1 formin binding protein 1
chr9_+_135832669 -0.82 4.28 4.35E-02 chr9:135832669-135832684 + 5UTR_first_intron,S
ENST00000372124.1/ENST00000339463.3 GFI1B
growth factor independent 1B transcription repressor
chr9_+_214829 0.38 7.50 6.12E-02 chr9:214829-214905 + TSS,S
ENST00000469197.1/ENST00000524396.1/ENST00000453981.1/ENST00000287364.3/ENST00000432829.2/ENST00000454469.2
DOCK8 dedicator of cytokinesis 8
126126
Persson et al.
chr9_+_328014 1.16 0.32 6.11E-02 chr9:328014-328188 + CDS_or_noncoding_inner_exon,S
ENST00000453981.1/ENST00000287364.3/ENST00000432829.2/ENST00000469391.1/ENST00000483757.1/ENST00000454469.2/ENST00000495184.1/ENST00000382341.1
DOCK8 dedicator of cytokinesis 8
chr9_+_95737509 1.65 0.71 6.33E-02 chr9:95737509-95737647 + TSS,S ENST00000467786.1 FGD3 FYVE, RhoGEF and PH domain containing 3
chr9_+_95738695 0.94 3.02 3.57E-02 chr9:95738695-95738858 + CDS_or_noncoding_inner_exon,S
ENST00000375482.3/ENST00000416701.2/ENST00000337352.6/ENST00000467786.1
FGD3 FYVE, RhoGEF and PH domain containing 3
chr9_-_107690334 0.72 5.13 5.23E-03 chr9:107690334-107690529 - TSS,SENST00000374736.3/ENST00000423487.2/ENST00000374733.1
ABCA1ATP-binding cassette, sub-family A (ABC1), member 1
chr9_-_111179237 0.87 2.30 8.99E-02 chr9:111179237-111179324 - intergenic intergenic NA NA
chr9_-_117160213 0.63 2.36 9.67E-02 chr9:117160213-117160265 - CDS_or_noncoding_first_intron,S ENST00000448674.1 RP11-9M16.2
chr9_-_123476315 1.13 2.47 2.52E-03 chr9:123476315-123476457 - CDS_or_noncoding_first_exon,S
ENST00000426959.1/ENST00000373930.3 MEGF9 multiple EGF-like-
domains 9
chr9_-_123476661 0.48 6.70 6.70E-03 chr9:123476661-123476826 - TSS,S ENST00000373930.3 MEGF9 multiple EGF-like-domains 9
chr9_-_139258134 -0.80 3.01 3.58E-02 chr9:139258134-139258255 - TSS,S ENST00000371739.3/ENST00000371738.3 DNLZ DNL-type zinc finger
chr9_-_34088310 -1.04 2.99 3.50E-02 chr9:34088310-34088405 - CDS_or_noncoding_last_exon,S ENST00000361264.3 DCAF12 DDB1 and CUL4
associated factor 12
chr9_-_34126465 1.38 3.18 8.35E-02 chr9:34126465-34126514 - TSSregion500,S ENST00000361264.3 DCAF12 DDB1 and CUL4 associated factor 12
chr9_-_74979780 1.22 2.73 3.04E-02 chr9:74979780-74979938 - TSS,S ENST00000487330.1 ZFAND5 zinc finger, AN1-type domain 5
chr9_-_80646818 0.49 4.38 8.02E-02 chr9:80646818-80646920 - TSSregion500,S ENST00000286548.4 GNAQguanine nucleotide binding protein (G protein), q polypeptide
chr9_-_88356719 0.55 6.11 5.47E-03 chr9:88356719-88356910 - TSS,SENST00000376083.3/ENST00000357081.3/ENST00000376081.4
AGTPBP1 ATP/GTP binding protein 1
127127
Persson et al.
chr9_-_88969256 0.40 6.94 4.02E-02 chr9:88969256-88969454 - TSS,S
ENST00000277141.6/ENST00000375960.2/ENST00000375961.2/ENST00000375963.3
ZCCHC6 zinc finger, CCHC domain containing 6
chr9_-_94186065 0.53 5.78 5.48E-02 chr9:94186065-94186172 - TSS,S ENST00000375724.1/ENST00000297689.2 NFIL3 nuclear factor,
interleukin 3 regulated
chrM_+_10055 -0.66 5.94 5.36E-02 chrM:10055-10087 + intergenic intergenic NA NAchrM_+_10855 -1.11 2.68 9.74E-02 chrM:10855-10856 + intergenic intergenic NA NAchrM_+_11848 -0.60 6.21 6.11E-02 chrM:11848-11913 + intergenic intergenic NA NAchrM_+_13053 -0.86 3.83 4.04E-02 chrM:13053-13056 + intergenic intergenic NA NAchrM_+_13100 -0.82 3.65 8.60E-02 chrM:13100-13107 + intergenic intergenic NA NAchrM_+_13179 -0.89 2.64 8.31E-02 chrM:13179-13182 + intergenic intergenic NA NAchrM_+_13632 -0.70 5.05 8.21E-02 chrM:13632-13644 + intergenic intergenic NA NAchrM_+_13709 -0.92 6.63 5.42E-02 chrM:13709-13738 + intergenic intergenic NA NAchrM_+_13828 -0.93 3.34 4.00E-02 chrM:13828-13833 + intergenic intergenic NA NAchrM_+_13838 -0.97 2.58 4.94E-02 chrM:13838-13840 + intergenic intergenic NA NAchrM_+_15042 -0.88 4.12 5.38E-02 chrM:15042-15052 + intergenic intergenic NA NAchrM_+_5462 -2.07 -0.30 5.14E-02 chrM:5462-5463 + intergenic intergenic NA NA
chrX_+_100667002 1.13 1.72 1.51E-02 chrX:100667002-100667030 + CDS_or_noncoding_inner_exon,S ENST00000457902.1 HNRNPH2 heterogeneous nuclear
ribonucleoprotein H2 (H')
chrX_+_117629770 0.52 4.44 6.46E-02 chrX:117629770-117629835 + TSSregion500,S ENST00000276204.6/ENST00000276202.7 DOCK11 dedicator of cytokinesis
11
chrX_+_128926304 0.81 2.40 6.65E-02 chrX:128926304-128926425 + CDS_or_noncoding_inner_exon,S
ENST00000443760.2/ENST00000356892.3 SASH3 SAM and SH3 domain
containing 3
chrX_+_12924650 0.37 7.86 5.48E-02 chrX:12924650-12924803 + TSS,S ENST00000218032.6/ENST00000311912.5 TLR8 toll-like receptor 8
chrX_+_14891459 0.43 5.88 4.15E-02 chrX:14891459-14891655 + TSS,S
ENST00000380492.3/ENST00000497603.1/ENST00000482354.1/ENST00000461777.1
MOSPD2 motile sperm domain containing 2
chrX_+_153668294 1.55 0.67 2.06E-02 chrX:153668294-153668383 + TSS,S ENST00000489589.1 GDI1 GDP dissociation inhibitor 1
chrX_+_17024264 0.65 5.67 7.54E-03 chrX:17024264-17024436 + 5UTR_inner_exon,S ENST00000380064.4 REPS2 RALBP1 associated Eps
domain containing 2chrX_+_17546479 1.05 2.34 6.49E-03 chrX:17546479-17546575 + TSS,S ENST00000433228.1 RP1-60N8.1
128128
Persson et al.
chrX_+_23801430 1.87 0.27 2.99E-02 chrX:23801430-23801433 + TSSregion500,S
ENST00000379251.3/ENST00000379253.3/ENST00000379254.1/ENST00000379270.4/ENST00000489394.1/ENST00000463236.1/ENST00000487713.1
SAT1 spermidine/spermine N1-acetyltransferase 1
chrX_+_37672187 -1.16 0.59 6.65E-02 chrX:37672187-37672196 + 3UTR_last_exon,S ENST00000378588.4 CYBB cytochrome b-245, beta polypeptide
chrX_+_48542669 0.94 2.69 7.80E-02 chrX:48542669-48542780 + CDS_or_noncoding_inner_exon,S
ENST00000450772.1/ENST00000376701.4/ENST00000465982.1/ENST00000483750.1
WAS Wiskott-Aldrich syndrome
chrX_+_54590685 -1.61 0.20 2.50E-02 chrX:54590685-54590858 + intergenic intergenic NA NA
chrX_+_64947678 1.70 0.76 1.12E-02 chrX:64947678-64947746 + CDS_or_noncoding_inner_exon,S ENST00000360270.5 MSN moesin
chrX_+_70520082 -0.68 3.82 4.15E-02 chrX:70520082-70520265 + TSSregion500,S ENST00000536900.1 AL590762.1
chrX_+_70782720 -1.26 0.68 9.46E-02 chrX:70782720-70782820 + CDS_or_noncoding_inner_exon,S
ENST00000373719.3/ENST00000373701.3/ENST00000488174.1
OGTO-linked N-acetylglucosamine (GlcNAc) transferase
chrX_+_70787821 -1.46 -0.35 6.10E-02 chrX:70787821-70787915 + CDS_or_noncoding_inner_exon,S
ENST00000373719.3/ENST00000373701.3/ENST00000488174.1
OGTO-linked N-acetylglucosamine (GlcNAc) transferase
chrX_+_9431316 0.68 2.39 8.39E-02 chrX:9431316-9431381 + TSS,S
ENST00000407597.2/ENST00000424279.1/ENST00000536365.1/ENST00000441088.1/ENST00000380961.1/ENST00000415293.1
TBL1X transducin (beta)-like 1X-linked
chrX_-_108975973 2.06 -0.53 1.58E-02 chrX:108975973-108976076 - 5UTR_first_intron,S
ENST00000469796.2/ENST00000340800.2/ENST00000348502.6/ENST00000502391.1/ENST00000508092.1/ENST00000504980.1/ENST00000469857.1
ACSL4acyl-CoA synthetase long-chain family member 4
chrX_-_119694781 0.49 3.36 7.33E-02 chrX:119694781-119694785 - TSSregion500,S ENST00000371322.5 CUL4B cullin 4B
chrX_-_13397356 -0.50 4.57 9.02E-02 chrX:13397356-13397518 - TSS,S ENST00000388829.3 GPX1P1 glutathione peroxidase pseudogene 1
129129
Persson et al.
chrX_-_19905539 0.37 6.74 7.41E-02 chrX:19905539-19905722 - TSS,SENST00000379702.2/ENST00000397821.3/ENST00000379697.3
SH3KBP1 SH3-domain kinase binding protein 1
chrX_-_30907364 0.48 3.35 6.41E-02 chrX:30907364-30907558 - 5UTR_inner_intron,S
ENST00000288422.2/ENST00000378932.2 TAB3
TGF-beta activated kinase 1/MAP3K7 binding protein 3
chrY_-_21903194 1.76 -0.20 6.25E-02 chrY:21903194-21903364 - CDS_or_noncoding_inner_exon,S
ENST00000317961.4/ENST00000541639.1/ENST00000440077.1/ENST00000535647.1/ENST00000447300.1
KDM5D lysine (K)-specific demethylase 5D
130130
236
Persson et al.
Table E6. Differentially expressed tag clusters for CA vs CTRL (glm analysis adjusted for neutrophil, eosinophil and lymphocyte counts as fractions of total leukocyte counts).
TC logFC logCPM Adj. P Position Strand Annotation Transcript iD Gene symbol Description
chr10_+_17271431 -2.20 0.89 2.02E-02 chr10:17271431-17271436 + TSSregion500,S ENST00000485947.1 VIM vimentin
chr10_+_35484802 1.55 3.31 8.33E-02 chr10:35484802-35484926 + TSS,SENST00000474931.1/ENST00000468236.1/ENST00000344351.5
CREM cAMP responsive element modulator
chr10_+_5136559 1.52 4.74 3.71E-04 chr10:5136559-5136636 + TSSregion500,S ENST00000480697.1 AKR1C3
aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)
chr10_+_89623808 -1.24 1.54 6.26E-02 chr10:89623808-89623866 + TSSregion500,S ENST00000462694.1/ENST00000487939.1 PTEN phosphatase and tensin
homolog
chr10_-_126849088 1.17 2.29 1.88E-02 chr10:126849088-126849149 - TSSregion500,SENST00000337195.5/ENST00000494626.2/ENST00000460976.1
CTBP2 C-terminal binding protein 2
chr10_-_64576013 -1.41 2.27 8.42E-02 chr10:64576013-64576175 - TSS,S ENST00000242480.3/ENST00000411732.1 EGR2 early growth response 2
chr11_-_85522024 0.68 4.68 9.92E-02 chr11:85522024-85522224 - TSS,S
ENST00000389960.4/ENST00000316356.4/ENST00000527523.1/ENST00000524830.1
SYTL2 synaptotagmin-like 2
chr14_-_35872416 -1.43 3.05 7.77E-02 chr14:35872416-35872424 - TSSregion500,S ENST00000555371.1/ENST00000556664.1 NFKBIA
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
chr14_-_35873848 -1.11 7.13 3.60E-02 chr14:35873848-35873985 - TSS,S
ENST00000216797.5/ENST00000554001.1/ENST00000557140.1/ENST00000553342.1/ENST00000557100.1/ENST00000557459.1/ENST00000555629.1
NFKBIAnuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
chr15_+_81616636 -1.28 1.03 7.15E-02 chr15:81616636-81616832 + TSS,S ENST00000559781.1/ENST00000560973.1 RP11-761I4.3
131131
237238239
Persson et al.
chr16_+_3096707 -1.32 2.24 7.15E-02 chr16:3096707-3096711 + TSSregion500,S ENST00000336577.3 MMP25 matrix metallopeptidase 25
chr17_+_56408834 1.99 0.64 8.42E-02 chr17:56408834-56408982 + upstream1000,AS ENST00000384835.1 MIR142 microRNA 142
chr17_+_72462527 0.95 5.02 7.94E-02 chr17:72462527-72462548 + TSSregion500,S
ENST00000361933.2/ENST00000360141.3/ENST00000392625.3/ENST00000310828.5
CD300A CD300a molecule
chr17_-_27916532 -0.56 3.69 9.38E-02 chr17:27916532-27916694 - TSS,SENST00000225394.3/ENST00000394869.3/ENST00000335356.6
GIT1 G protein-coupled receptor kinase interacting ArfGAP 1
chr17_-_68165434 -1.45 0.88 9.38E-02 chr17:68165434-68165544 - TSSregion500,AS ENST00000243457.2 KCNJ2
potassium inwardly-rectifying channel, subfamily J, member 2
chr19_+_39897475 -0.59 10.52 8.42E-02 chr19:39897475-39897519 + TSS,S ENST00000248673.3 ZFP36 zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39898819 -1.40 2.43 4.47E-02 chr19:39898819-39898828 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36 zinc finger protein 36, C3H
type, homolog (mouse)chr19_+_7437754 -1.62 0.83 7.94E-02 chr19:7437754-7437912 + intergenic intergenic NA NA
chr19_-_29704012 -0.51 6.11 5.34E-02 chr19:29704012-29704147 - TSS,S ENST00000304863.3 UQCRFS1ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
chr19_-_3984160 -1.19 4.01 6.26E-02 chr19:3984160-3984353 -CDS_or_noncoding_inner_exon,S
ENST00000543343.1/ENST00000309311.5 EEF2 eukaryotic translation
elongation factor 2
chr19_-_44178472 1.88 0.90 5.34E-02 chr19:44178472-44178579 - intergenic intergenic NA NA
chr1_+_198620044 2.22 0.78 3.85E-02 chr1:198620044-198620200 + CDS_or_noncoding_first_intron,S
ENST00000418674.1/ENST00000427110.2/ENST00000391970.3
PTPRCprotein tyrosine phosphatase, receptor type, C
chr1_+_24829354 -0.57 5.85 4.47E-02 chr1:24829354-24829538 + TSS,S ENST00000436717.2/ENST00000374395.3 RCAN3 RCAN family member 3
chr1_+_40854389 -1.09 2.58 2.91E-02 chr1:40854389-40854414 + CDS_or_noncoding_first_intron,S
ENST00000372718.3/ENST00000372708.1 SMAP2 small ArfGAP2
chr1_-_156786472 0.87 6.18 9.38E-02 chr1:156786472-156786650 - TSS,SENST00000368198.3/ENST00000392306.2/ENST00000495306.1
SH2D2A SH2 domain containing 2A
132132
Persson et al.
chr1_-_167409896 1.70 0.90 9.39E-02 chr1:167409896-167410008 -CDS_or_noncoding_inner_exon,S
ENST00000362089.5/ENST00000392122.3/ENST00000483825.1
CD247 CD247 molecule
chr20_+_30193050 -3.57 1.67 2.02E-02 chr20:30193050-30193211 + TSS,S ENST00000376112.3/ENST00000376105.3 ID1
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
chr21_+_46385445 1.72 1.57 1.88E-02 chr21:46385445-46385638 +CDS_or_noncoding_inner_intron,S
ENST00000291634.6/ENST00000397826.3/ENST00000458015.1/ENST00000479127.1
FAM207A family with sequence similarity 207, member A
chr21_-_40720929 -0.56 5.02 6.09E-02 chr21:40720929-40721049 - TSS,S
ENST00000436324.1/ENST00000380748.1/ENST00000419378.1/ENST00000443046.1/ENST00000486741.1/ENST00000464078.1/ENST00000491183.1/ENST00000479586.1/ENST00000482733.1/ENST00000463631.1
HMGN1high mobility group nucleosome binding domain 1
chr22_-_38539356 1.11 1.91 8.42E-02 chr22:38539356-38539520 - TSS,S ENST00000498338.1 PLA2G6phospholipase A2, group VI (cytosolic, calcium-independent)
chr2_+_143718820 2.07 0.66 9.65E-02 chr2:143718820-143718872 +CDS_or_noncoding_inner_intron,S
ENST00000264170.4/ENST00000375773.2/ENST00000409512.1
KYNU kynureninase
chr2_+_7865810 0.84 4.80 2.18E-02 chr2:7865810-7865995 + TSS,S ENST00000417930.1 AC092580.4
chr2_+_98329970 2.06 0.64 9.22E-02 chr2:98329970-98329976 + TSSregion500,S ENST00000264972.5/ENST00000483781.1 ZAP70
zeta-chain (TCR) associated protein kinase 70kDa
chr2_-_235404769 1.36 1.48 9.38E-02 chr2:235404769-235404842 - CDS_or_noncoding_first_exon,S
ENST00000390645.2/ENST00000339728.3 ARL4C ADP-ribosylation factor-like
4C
chr2_-_47387476 2.46 0.80 3.85E-02 chr2:47387476-47387641 - CDS_or_noncoding_last_exon,S ENST00000460218.1 CALM2
calmodulin 2 (phosphorylase kinase, delta)
chr3_+_174094991 -0.43 8.17 6.26E-02 chr3:174094991-174095018 + TSSregion500,S ENST00000435269.1 RP11-393N4.2
133133
Persson et al.
chr5_+_137801158 -2.11 5.91 8.42E-02 chr5:137801158-137801179 + TSS,SENST00000411801.2/ENST00000535792.1/ENST00000239938.4
EGR1 early growth response 1
chr5_+_137801300 -2.71 1.93 2.02E-02 chr5:137801300-137801415 + TSSregion500,SENST00000411801.2/ENST00000535792.1/ENST00000239938.4
EGR1 early growth response 1
chr5_+_137802453 -2.48 1.49 9.77E-02 chr5:137802453-137802597 +CDS_or_noncoding_inner_exon,S
ENST00000411801.2/ENST00000535792.1 EGR1 early growth response 1
chr6_+_14117860 -1.25 5.18 5.56E-02 chr6:14117860-14118039 + TSS,S ENST00000379153.3 CD83 CD83 molecule
chr6_+_154566797 -2.79 0.81 5.15E-02 chr6:154566797-154566904 + CDS_or_noncoding_last_intron,S ENST00000337049.4 OPRM1 opioid receptor, mu 1
chr6_-_170893668 -0.40 5.94 9.56E-02 chr6:170893668-170893767 - TSS,S
ENST00000541970.1/ENST00000167218.5/ENST00000392090.2/ENST00000545869.1/ENST00000542896.1/ENST00000453163.2/ENST00000537445.1/ENST00000443345.2
PDCD2 programmed cell death 2
chr6_-_31560676 0.79 5.20 9.38E-02 chr6:31560676-31560808 - TSS,S
ENST00000340027.5/ENST00000376073.4/ENST00000376072.3/ENST00000491161.1
NCR3 natural cytotoxicity triggering receptor 3
chr6_-_43197089 -0.60 3.49 4.47E-02 chr6:43197089-43197245 - TSS,SENST00000230431.6/ENST00000509253.1/ENST00000393987.2
C6ORF108 NA
chr7_+_50343639 -0.44 5.76 9.38E-02 chr7:50343639-50343696 + TSSregion500,S ENST00000484847.1 IKZF1 IKAROS family zinc finger 1 (Ikaros)
chr9_+_4662265 -0.99 2.74 2.27E-02 chr9:4662265-4662424 + TSS,S ENST00000381883.2/ENST00000537542.1 PPAPDC2
phosphatidic acid phosphatase type 2 domain containing 2
chr9_-_37027589 -1.06 1.98 6.26E-02 chr9:37027589-37027706 - 5UTR_first_intron,S
ENST00000377849.3/ENST00000522003.1/ENST00000523145.1
PAX5 paired box 5
chrM_+_650 -1.81 5.25 7.15E-02 chrM:650-653 + intergenic intergenic NA NAchrM_+_811 -1.41 4.58 4.47E-02 chrM:811-814 + intergenic intergenic NA NA
134134
Persson et al.
chrX_+_1387667 6.79 4.26 9.22E-02 chrX:1387667-1387812 + TSS,S
ENST00000381529.3/ENST00000501036.2/ENST00000432318.2/ENST00000361536.3/ENST00000381507.4/ENST00000381524.3/ENST00000412290.1/ENST00000419094.1/ENST00000381509.3/ENST00000486791.1/ENST00000355432.3/ENST00000355805.2/ENST00000493312.1/ENST00000494969.1/ENST00000481245.1
CSF2RAcolony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
chrX_+_155110927 7.01 4.40 7.15E-02 chrX:155110927-155111078 + TSS,S
ENST00000286448.6/ENST00000488344.1/ENST00000262640.6/ENST00000460621.1/ENST00000479687.1/ENST00000463317.1
VAMP7 vesicle-associated membrane protein 7
chrX_+_2609209 8.88 6.65 2.02E-02 chrX:2609209-2609401 + TSS,SENST00000381192.3/ENST00000381187.3/ENST00000381184.1
CD99 CD99 molecule
chrX_-_1510944 8.95 7.01 2.02E-02 chrX:1510944-1511062 - TSS,S ENST00000475167.1/ENST00000484026.1 SLC25A6
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6
chrX_-_1655991 7.49 5.19 3.60E-02 chrX:1655991-1656187 - TSS,S ENST00000381297.4 P2RY8 purinergic receptor P2Y, G-protein coupled, 8
135135
240
Persson et al.
Table E7. Differentially expressed tag clusters for SA vs CTRL (glm analysis adjusted for neutrophil, eosinophil and lymphocyte counts as fractions of total leukocyte counts).
TC logFC logCPM Adj. P Position Strand Annotation Transcript iD Gene symbol Description
chr10_+_102672682 0.45 4.90 7.93E-02 chr10:102672682-102672790 + TSS,SENST00000370271.3/ENST00000238961.3/ENST00000370269.3
FAM178A family with sequence similarity 178, member A
chr10_+_114206949 0.51 5.86 1.97E-02 chr10:114206949-114207088 + TSS,S
ENST00000432306.1/ENST00000393077.2/ENST00000496445.1/ENST00000489142.1/ENST00000494728.1
VTI1Avesicle transport through interaction with t-SNAREs homolog 1A (yeast)
chr10_+_12615851 1.52 0.75 7.48E-02 chr10:12615851-12615975 +CDS_or_noncoding_inner_intron,S
ENST00000378847.3/ENST00000378845.1 CAMK1D
calcium/calmodulin-dependent protein kinase ID
chr10_+_135044125 -1.36 1.17 2.99E-02 chr10:135044125-135044239 + CDS_or_noncoding_first_exon,S ENST00000304477.2 UTF1
undifferentiated embryonic cell transcription factor 1
chr10_+_17727413 -1.25 0.91 7.26E-02 chr10:17727413-17727587 + 5UTR_inner_intron,S ENST00000540523.1 STAM
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
chr10_+_20105327 0.45 5.33 5.55E-02 chr10:20105327-20105379 + TSS,S ENST00000536022.1 PLXDC2 plexin domain containing 2
chr10_+_20105533 0.63 3.75 3.83E-02 chr10:20105533-20105573 + TSSregion500,S
ENST00000377242.3/ENST00000377238.1/ENST00000377252.3/ENST00000536022.1
PLXDC2 plexin domain containing 2
chr10_+_23727931 -0.52 4.77 5.56E-02 chr10:23727931-23728090 + TSSregion500,S ENST00000376495.3 OTUD1 OTU domain containing 1
chr10_+_5136559 1.14 4.74 9.72E-03 chr10:5136559-5136636 + TSSregion500,S ENST00000480697.1 AKR1C3
aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)
chr10_+_89636687 0.91 4.03 9.04E-02 chr10:89636687-89636701 + CDS_or_noncoding_first_intron,S ENST00000371953.3 PTEN phosphatase and tensin
homolog
chr10_+_90639943 0.54 3.67 9.18E-02 chr10:90639943-90640043 + TSS,S ENST00000461650.1 STAMBPL1 STAM binding protein-like 1
chr10_-_15902420 0.62 4.63 1.16E-02 chr10:15902420-15902532 - TSS,S ENST00000277632.3/ENST00000477891.1 FAM188A family with sequence
similarity 188, member A
chr10_-_22292557 0.55 4.86 2.78E-02 chr10:22292557-22292701 - TSS,S ENST00000376980.3/ENST00000376946.1 DNAJC1 DnaJ (Hsp40) homolog,
subfamily C, member 1
136136
241242243
Persson et al.
chr10_-_27112108 1.01 1.69 7.57E-02 chr10:27112108-27112244 - TSS,S ENST00000473481.1 ABI1 abl-interactor 1
chr10_-_30024220 0.83 1.76 7.03E-02 chr10:30024220-30024337 - 5UTR_first_intron,S
ENST00000375400.3/ENST00000375398.2 SVIL supervillin
chr10_-_30024715 0.43 4.94 7.79E-02 chr10:30024715-30024904 - TSS,S ENST00000375400.3/ENST00000375398.2 SVIL supervillin
chr10_-_5326367 1.66 0.68 6.27E-02 chr10:5326367-5326544 -CDS_or_noncoding_inner_intron,S
ENST00000432689.1/ENST00000305623.8
RP11-445P17.4
chr10_-_64576013 -1.28 2.27 4.66E-02 chr10:64576013-64576175 - TSS,S ENST00000242480.3/ENST00000411732.1 EGR2 early growth response 2
chr10_-_7452857 0.66 3.75 3.35E-02 chr10:7452857-7453031 - 5UTR_first_intron,S
ENST00000397167.1/ENST00000379713.3/ENST00000397160.3
SFMBT2 Scm-like with four mbt domains 2
chr11_+_101785734 1.17 1.21 7.00E-02 chr11:101785734-101785762 + TSS,S ENST00000263468.8 KIAA1377 KIAA1377
chr11_+_105052451 -1.93 0.53 3.12E-02 chr11:105052451-105052609 +CDS_or_noncoding_inner_intron,AS
ENST00000528811.1 RP11-94P11.4
chr11_+_108094041 0.60 4.72 2.03E-02 chr11:108094041-108094204 + TSSregion500,S ENST00000530958.1/ENST00000526567.1 ATM ataxia telangiectasia
mutated
chr11_+_112832057 0.98 3.86 8.17E-02 chr11:112832057-112832246 + TSS,S
ENST00000527506.1/ENST00000533760.1/ENST00000528742.1/ENST00000397957.4/ENST00000534618.1/ENST00000526427.1/ENST00000524665.1/ENST00000529420.1/ENST00000531838.1/ENST00000534015.1
NCAM1 neural cell adhesion molecule 1
chr11_+_121407210 1.77 0.62 8.15E-02 chr11:121407210-121407306 +CDS_or_noncoding_inner_intron,S
ENST00000260197.6/ENST00000532451.1 SORL1
sortilin-related receptor, L(DLR class) A repeats containing
chr11_+_13690142 0.55 5.91 9.50E-03 chr11:13690142-13690328 + TSS,SENST00000354817.3/ENST00000532701.1/ENST00000355107.6
FAR1 fatty acyl CoA reductase 1
chr11_+_28131817 0.53 3.86 8.15E-02 chr11:28131817-28131882 + TSS,SENST00000303459.6/ENST00000379199.2/ENST00000437814.1
METTL15 methyltransferase like 15
chr11_+_43902610 0.67 2.41 7.91E-02 chr11:43902610-43902659 + TSSregion500,S
ENST00000532962.1/ENST00000302708.4/ENST00000378840.4/ENST00000534171.1/ENST00000530803.1/ENST00000524742.1/ENST00000527029.1
ALKBH3 alkB, alkylation repair homolog 3 (E. coli)
137137
Persson et al.
chr11_+_44939434 1.08 3.14 1.64E-02 chr11:44939434-44939570 + TSSregion500,S ENST00000520245.1 TSPAN18 tetraspanin 18
chr11_+_60237271 -1.87 0.59 3.50E-02 chr11:60237271-60237456 + 3UTR_last_exon,S
ENST00000345732.4/ENST00000532073.1/ENST00000534668.1/ENST00000389939.2
MS4A1membrane-spanning 4-domains, subfamily A, member 1
chr11_+_65190259 1.00 9.34 9.50E-03 chr11:65190259-65190323 + TSS,S ENST00000501122.2 NEAT1nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65190530 1.02 4.19 5.26E-02 chr11:65190530-65190557 + TSSregion500,S ENST00000499732.1/ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65191067 1.63 0.54 7.03E-02 chr11:65191067-65191070 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65195912 1.91 0.76 6.60E-02 chr11:65195912-65195956 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65198184 1.79 1.50 3.61E-02 chr11:65198184-65198284 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65199856 1.20 2.01 9.36E-02 chr11:65199856-65199990 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65200038 1.76 1.00 4.26E-02 chr11:65200038-65200082 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65205696 1.69 1.18 3.20E-02 chr11:65205696-65205744 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65209472 1.66 3.30 1.67E-02 chr11:65209472-65209618 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_65270335 -1.32 0.97 8.81E-02 chr11:65270335-65270336 + CDS_or_noncoding_first_exon,S
ENST00000544868.1/ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_65272872 1.89 0.52 6.33E-02 chr11:65272872-65272878 + CDS_or_noncoding_first_exon,S ENST00000534336.1 MALAT1
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
chr11_+_75526208 0.53 5.66 1.40E-02 chr11:75526208-75526325 + TSS,S ENST00000356136.3 UVRAG UV radiation resistance associated
138138
Persson et al.
chr11_+_76156033 0.41 5.60 6.09E-02 chr11:76156033-76156137 + TSS,S
ENST00000533988.1/ENST00000524490.1/ENST00000334736.3/ENST00000343878.3/ENST00000393457.2/ENST00000533972.1/ENST00000525959.1/ENST00000528826.1
C11ORF30 NA
chr11_+_809918 -0.48 12.25 7.17E-02 chr11:809918-810018 + TSS,SENST00000530797.1/ENST00000532004.1/ENST00000524867.1
RPLP2 ribosomal protein, large, P2
chr11_+_8704273 -0.43 7.54 6.32E-02 chr11:8704273-8704391 + TSS,S
ENST00000531978.1/ENST00000524496.1/ENST00000534599.1/ENST00000532359.1/ENST00000530022.1/ENST00000529227.1/ENST00000530585.1
RPL27A ribosomal protein L27a
chr11_-_10315600 0.67 5.82 2.35E-03 chr11:10315600-10315799 - TSS,S ENST00000256190.8 SBF2 SET binding factor 2
chr11_-_107328431 0.54 5.93 1.18E-02 chr11:107328431-107328604 - TSS,S ENST00000282251.5/ENST00000433523.1 CWF19L2 CWF19-like 2, cell cycle
control (S. pombe)
chr11_-_17229430 0.46 5.30 7.17E-02 chr11:17229430-17229557 - TSS,S
ENST00000540361.1/ENST00000544896.1/ENST00000533645.1/ENST00000532035.1/ENST00000531428.1/ENST00000503729.2
PIK3C2A
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr11_-_3147741 1.99 1.62 4.02E-02 chr11:3147741-3147922 - TSS,SENST00000525498.1/ENST00000459995.1/ENST00000477622.1
OSBPL5 oxysterol binding protein-like 5
chr11_-_46142520 0.57 4.65 1.67E-02 chr11:46142520-46142695 - TSS,S
ENST00000418153.2/ENST00000532883.1/ENST00000529734.1/ENST00000530312.1
PHF21A PHD finger protein 21A
chr11_-_6767576 0.38 6.23 7.94E-02 chr11:6767576-6767772 - TSS,S ENST00000526769.1 GVINP1GTPase, very large interferon inducible pseudogene 1
chr11_-_85522024 0.78 4.68 9.58E-03 chr11:85522024-85522224 - TSS,S
ENST00000389960.4/ENST00000316356.4/ENST00000527523.1/ENST00000524830.1
SYTL2 synaptotagmin-like 2
139139
Persson et al.
chr11_-_85779972 0.48 8.47 1.18E-02 chr11:85779972-85780172 - TSS,S
ENST00000532317.1/ENST00000526033.1/ENST00000447890.2/ENST00000531558.1/ENST00000532041.1/ENST00000528256.1
PICALMphosphatidylinositol binding clathrin assembly protein
chr11_-_8985914 -0.40 5.98 8.17E-02 chr11:8985914-8986044 - TSS,S ENST00000309134.5/ENST00000528117.1 TMEM9B TMEM9 domain family,
member B
chr11_-_96076282 0.43 5.83 7.94E-02 chr11:96076282-96076481 - TSS,S ENST00000524717.1/ENST00000440572.2 MAML2 mastermind-like 2
(Drosophila)
chr12_+_102513893 0.99 1.49 6.89E-02 chr12:102513893-102514065 + TSS,S
ENST00000378128.3/ENST00000327680.2/ENST00000541394.1/ENST00000543784.1/ENST00000392909.3/ENST00000537257.1/ENST00000358383.5/ENST00000392911.2
C12ORF48 NA
chr12_+_104895602 2.40 0.88 4.54E-03 chr12:104895602-104895791 + CDS_or_noncoding_first_intron,S
ENST00000549260.1/ENST00000303694.5 CHST11 carbohydrate (chondroitin
4) sulfotransferase 11
chr12_+_104917829 1.49 1.11 6.33E-02 chr12:104917829-104917839 + CDS_or_noncoding_first_intron,S
ENST00000549260.1/ENST00000303694.5 CHST11 carbohydrate (chondroitin
4) sulfotransferase 11
chr12_+_119442508 -1.23 1.64 5.56E-02 chr12:119442508-119442521 + CDS_or_noncoding_first_intron,S ENST00000267260.4 SRRM4 serine/arginine repetitive
matrix 4
chr12_+_25205705 1.17 0.97 9.17E-02 chr12:25205705-25205709 + TSSregion500,S
ENST00000557489.1/ENST00000354454.3/ENST00000536173.1/ENST00000548766.1/ENST00000556887.1/ENST00000554942.1/ENST00000547044.1/ENST00000554272.1/ENST00000549437.1
LRMP lymphoid-restricted membrane protein
chr12_+_29301965 1.44 0.90 2.12E-02 chr12:29301965-29301982 + TSSregion500,S
ENST00000551451.1/ENST00000536681.2/ENST00000547411.1/ENST00000549080.1/ENST00000550541.1
FAR2 fatty acyl CoA reductase 2
chr12_+_49412633 -1.19 1.36 3.47E-02 chr12:49412633-49412820 + CDS_or_noncoding_last_exon,S
ENST00000552933.1/ENST00000547866.1
RP11-386G11.5
140140
Persson et al.
chr12_+_51324643 -1.46 0.57 7.94E-02 chr12:51324643-51324666 + 3UTR_last_exon,S
ENST00000548553.1/ENST00000332160.4 METTL7A methyltransferase like 7A
chr12_+_56320945 -1.21 1.83 3.92E-02 chr12:56320945-56321130 + TSS,S ENST00000546878.1 DGKA diacylglycerol kinase, alpha 80kDa
chr12_+_5632862 -1.26 1.86 2.44E-02 chr12:5632862-5632873 + intergenic intergenic NA NA
chr12_+_62749547 1.29 0.97 7.17E-02 chr12:62749547-62749627 + CDS_or_noncoding_first_intron,S ENST00000549268.1 USP15 ubiquitin specific
peptidase 15
chr12_+_62860543 0.44 5.93 7.91E-02 chr12:62860543-62860657 + TSS,S
ENST00000280379.6/ENST00000393632.2/ENST00000393630.3/ENST00000546600.1/ENST00000261188.5/ENST00000552738.1/ENST00000547095.1/ENST00000393629.2/ENST00000552115.1/ENST00000549378.1
MON2 MON2 homolog (S. cerevisiae)
chr12_+_6879554 -1.62 0.63 6.33E-02 chr12:6879554-6879606 + CDS_or_noncoding_last_exon,S
ENST00000309083.6/ENST00000436860.1/ENST00000540667.1/ENST00000540828.1/ENST00000538057.1
PTMS parathymosin
141141
Persson et al.
chr12_+_69011819 1.21 1.06 4.79E-02 chr12:69011819-69011895 + 5UTR_first_intron,S
ENST00000250559.9/ENST00000393436.5/ENST00000425247.2/ENST00000489473.2/ENST00000422358.2/ENST00000541167.1/ENST00000538283.1/ENST00000341355.5/ENST00000537460.1/ENST00000450214.2/ENST00000545270.1/ENST00000538980.1/ENST00000542018.1/ENST00000543393.1/ENST00000534899.1/ENST00000453560.2/ENST00000378985.3/ENST00000540209.1/ENST00000540781.1/ENST00000535492.1/ENST00000539091.1/ENST00000542145.1/ENST00000485252.2/ENST00000456697.2/ENST00000541386.1/ENST00000538877.1/ENST00000543697.1/ENST00000545720.1/ENST00000541216.1
RAP1B RAP1B, member of RAS oncogene family
chr12_+_7053156 -0.40 6.73 8.17E-02 chr12:7053156-7053277 + TSS,S ENST00000229281.5 C12ORF57 NA
chr12_+_82752262 0.49 3.89 6.84E-02 chr12:82752262-82752351 + TSS,S
ENST00000248306.3/ENST00000548200.1/ENST00000547357.1/ENST00000548569.1/ENST00000547985.1
C12ORF26 NA
chr12_+_9795402 1.32 3.26 2.78E-03 chr12:9795402-9795522 + CDS_or_noncoding_first_exon,S ENST00000426641.2 GOT2P3
glutamic-oxaloacetic transaminase 2 pseudogene 3
chr12_+_9979978 1.18 6.46 3.43E-02 chr12:9979978-9980163 + TSS,S
ENST00000354855.3/ENST00000324214.4/ENST00000279544.3/ENST00000279545.3/ENST00000545196.1/ENST00000537723.1
KLRF1killer cell lectin-like receptor subfamily F, member 1
142142
Persson et al.
chr12_-_11324071 0.82 5.05 1.70E-03 chr12:11324071-11324256 - TSS,S
ENST00000536668.1/ENST00000535024.1/ENST00000541977.1/ENST00000381852.4/ENST00000546265.1
PRR4 proline rich 4 (lacrimal)
chr12_-_26986078 0.66 5.08 6.67E-03 chr12:26986078-26986222 - TSS,S ENST00000381340.3 ITPR2inositol 1,4,5-trisphosphate receptor, type 2
chr12_-_49582757 -0.65 2.35 5.55E-02 chr12:49582757-49582759 - TSSregion500,S ENST00000295766.5/ENST00000552924.1 TUBA1A tubulin, alpha 1a
chr12_-_53931191 1.15 1.32 6.68E-02 chr12:53931191-53931346 -CDS_or_noncoding_inner_exon,S
ENST00000420353.1/ENST00000306727.9/ENST00000415113.1/ENST00000548446.1/ENST00000328463.7/ENST00000456903.3
ATF7 activating transcription factor 7
chr12_-_57039668 -0.37 8.09 1.19E-02 chr12:57039668-57039866 - TSS,S
ENST00000262030.3/ENST00000552919.1/ENST00000552104.1/ENST00000551020.1/ENST00000552959.1/ENST00000553007.1/ENST00000547808.1/ENST00000548647.1
ATP5B
ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
chr12_-_68845284 1.15 4.37 8.55E-02 chr12:68845284-68845483 - TSS,S ENST00000542875.1 RP11-81H14.2
chr12_-_80328804 0.44 6.06 8.34E-02 chr12:80328804-80328979 - TSS,S ENST00000450142.2/ENST00000547330.1 PPP1R12A protein phosphatase 1,
regulatory subunit 12Achr12_-_8605602 0.98 2.47 4.02E-02 chr12:8605602-8605787 - intergenic intergenic NA NA
chr12_-_89746177 -0.59 6.30 5.52E-02 chr12:89746177-89746298 - TSS,S ENST00000308385.6/ENST00000548755.1 DUSP6 dual specificity
phosphatase 6
chr12_-_90102557 0.55 4.87 3.18E-02 chr12:90102557-90102575 - TSSregion500,S ENST00000428670.3 ATP2B1ATPase, Ca++ transporting, plasma membrane 1
chr12_-_95611163 1.12 2.35 6.92E-03 chr12:95611163-95611360 - TSS,SENST00000343958.4/ENST00000451107.3/ENST00000546711.1
FGD6 FYVE, RhoGEF and PH domain containing 6
chr13_+_100741266 0.65 3.05 7.32E-02 chr13:100741266-100741435 + TSS,S
ENST00000376286.4/ENST00000376279.3/ENST00000376285.1/ENST00000376277.2
PCCApropionyl CoA carboxylase, alpha polypeptide
chr13_+_106430294 -1.37 0.83 8.81E-02 chr13:106430294-106430323 + intergenic intergenic NA NA
chr13_+_23969117 -0.98 4.30 1.11E-02 chr13:23969117-23969132 +CDS_or_noncoding_first_intron,AS
ENST00000382292.3 SACSspastic ataxia of Charlevoix-Saguenay (sacsin)
143143
Persson et al.
chr13_+_28712305 0.45 5.06 5.00E-02 chr13:28712305-28712390 + TSSregion500,S ENST00000380958.3/ENST00000503791.1 PAN3
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
chr13_+_28712826 0.78 2.07 7.06E-02 chr13:28712826-28712853 + TSSregion500,S ENST00000399613.1/ENST00000503791.1 PAN3
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
chr13_+_28819357 1.81 0.99 2.67E-02 chr13:28819357-28819541 + CDS_or_noncoding_first_intron,S ENST00000282391.5 PAN3
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
chr13_+_32605272 0.61 3.70 6.71E-02 chr13:32605272-32605364 + TSSregion500,S
ENST00000380235.4/ENST00000380257.4/ENST00000380250.3/ENST00000463566.1
FRY furry homolog (Drosophila)
chr13_+_32605751 0.55 6.18 6.13E-02 chr13:32605751-32605928 + TSSregion500,S
ENST00000380235.4/ENST00000380257.4/ENST00000380250.3/ENST00000463566.1
FRY furry homolog (Drosophila)
chr13_+_35516400 1.22 1.64 4.38E-02 chr13:35516400-35516504 + TSS,S
ENST00000540320.1/ENST00000400445.3/ENST00000422518.2/ENST00000402346.1/ENST00000310336.4/ENST00000379939.1
NBEA neurobeachin
chr13_+_41557136 -1.28 1.01 4.27E-02 chr13:41557136-41557194 + 5UTR_first_intron,AS
ENST00000379498.3/ENST00000239882.3/ENST00000405737.2
ELF1E74-like factor 1 (ets domain transcription factor)
chr13_+_42031563 -0.68 5.66 8.00E-03 chr13:42031563-42031753 + TSS,S ENST00000379359.3 C13ORF15 NA
chr13_+_49550030 0.44 4.92 2.52E-02 chr13:49550030-49550222 + TSS,S ENST00000492622.1/ENST00000378383.1 FNDC3A fibronectin type III domain
containing 3A
chr13_-_111364724 -1.30 0.73 7.10E-02 chr13:111364724-111364837 - TSS,S ENST00000540629.1 CARS2cysteinyl-tRNA synthetase 2, mitochondrial (putative)
chr13_-_111567337 0.48 5.62 8.06E-02 chr13:111567337-111567441 - TSS,S
ENST00000267339.2/ENST00000375758.5/ENST00000310847.4/ENST00000465753.1
ANKRD10 ankyrin repeat domain 10
chr13_-_46728936 -1.54 0.70 1.90E-02 chr13:46728936-46729040 -CDS_or_noncoding_inner_exon,S
ENST00000323076.2/ENST00000398576.1/ENST00000416500.1
LCP1 lymphocyte cytosolic protein 1 (L-plastin)
144144
Persson et al.
chr14_+_102276127 0.41 6.35 6.23E-02 chr14:102276127-102276227 + TSS,S
ENST00000350249.3/ENST00000334756.6/ENST00000557621.1/ENST00000556946.1/ENST00000556307.1/ENST00000557714.1/ENST00000553730.1
PPP2R5Cprotein phosphatase 2, regulatory subunit B', gamma
chr14_+_103807770 -1.22 1.00 8.28E-02 chr14:103807770-103807930 + 3UTR_last_exon,S
ENST00000392715.2/ENST00000216554.3/ENST00000558506.1
EIF5 eukaryotic translation initiation factor 5
chr14_+_105531921 -0.81 2.25 9.36E-02 chr14:105531921-105532022 + TSSregion500,AS
ENST00000329797.3/ENST00000392585.2/ENST00000539291.2/ENST00000546679.1
GPR132 G protein-coupled receptor 132
chr14_+_20905818 1.11 1.89 7.28E-02 chr14:20905818-20905985 + TSSregion500,S ENST00000553568.1 RP11-203M5.6
chr14_+_39736548 0.40 5.57 4.95E-02 chr14:39736548-39736636 + TSS,S ENST00000556148.1/ENST00000348007.3 CTAGE5 CTAGE family, member 5
chr14_+_64319669 0.64 5.42 1.73E-02 chr14:64319669-64319734 + TSS,S
ENST00000358025.3/ENST00000357395.3/ENST00000344113.4/ENST00000341472.5/ENST00000356081.3
SYNE2spectrin repeat containing, nuclear envelope 2
chr14_+_65879691 0.74 2.56 4.28E-02 chr14:65879691-65879845 + TSS,S
ENST00000358307.2/ENST00000553924.1/ENST00000557338.1/ENST00000554610.1/ENST00000556292.1
FUT8fucosyltransferase 8 (alpha (1,6) fucosyltransferase)
chr14_+_66974827 0.79 3.02 7.19E-02 chr14:66974827-66974881 + TSS,S ENST00000459628.1 GPHN gephyrin
chr14_+_68286453 0.62 2.78 7.28E-02 chr14:68286453-68286561 + TSS,S
ENST00000479335.1/ENST00000487861.1/ENST00000471583.1/ENST00000487270.1/ENST00000488612.1
RAD51B RAD51 homolog B (S. cerevisiae)
chr14_+_71787776 0.72 4.81 2.35E-03 chr14:71787776-71787875 + TSSregion500,S ENST00000557151.1 SIPA1L1signal-induced proliferation-associated 1 like 1
chr14_+_72054563 1.44 0.75 3.35E-02 chr14:72054563-72054727 + 5UTR_inner_exon,S
ENST00000381232.3/ENST00000555818.1/ENST00000358550.2
SIPA1L1signal-induced proliferation-associated 1 like 1
chr14_+_75748467 -1.79 0.71 2.06E-02 chr14:75748467-75748500 + 3UTR_last_exon,S ENST00000303562.4 FOS
FBJ murine osteosarcoma viral oncogene homolog
chr14_+_86400942 0.64 4.16 6.33E-02 chr14:86400942-86401126 + TSS,S ENST00000557195.1 CTD-2341M24.1
145145
Persson et al.
chr14_-_23771335 -1.69 0.70 2.52E-02 chr14:23771335-23771340 - 5UTR_inner_intron,AS ENST00000553824.1 BCL2L2 BCL2-like 2
chr14_-_25102153 1.71 0.95 8.06E-02 chr14:25102153-25102254 -CDS_or_noncoding_inner_exon,S
ENST00000415355.3/ENST00000216341.4/ENST00000382542.1/ENST00000382540.1/ENST00000554242.1/ENST00000530830.1/ENST00000526004.1
GZMB
granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
chr14_-_89952911 0.80 3.53 8.15E-02 chr14:89952911-89953105 - 5UTR_inner_exon,S
ENST00000555855.1/ENST00000555034.1/ENST00000553904.1
FOXN3 forkhead box N3
chr15_+_22550633 2.11 2.26 4.70E-03 chr15:22550633-22550814 + intergenic intergenic NA NA
chr15_+_55611346 0.85 2.16 7.99E-02 chr15:55611346-55611380 + TSSregion500,S ENST00000164305.4/ENST00000539642.1 PIGB
phosphatidylinositol glycan anchor biosynthesis, class B
chr15_+_69111448 -0.79 2.19 6.83E-02 chr15:69111448-69111534 + CDS_or_noncoding_last_intron,S ENST00000560188.1 RP11-
696L21.1 NA
chr15_+_78462578 -1.16 2.44 5.08E-03 chr15:78462578-78462718 + CDS_or_noncoding_last_exon,S ENST00000558535.1 IDH3A isocitrate dehydrogenase
3 (NAD+) alpha
chr15_+_86087291 0.82 4.98 1.59E-03 chr15:86087291-86087325 + 5UTR_inner_intron,S ENST00000426424.2 AKAP13 A kinase (PRKA) anchor
protein 13
chr15_+_86266304 1.38 0.84 5.00E-02 chr15:86266304-86266465 +CDS_or_noncoding_inner_exon,S
ENST00000426424.2/ENST00000394518.2/ENST00000361243.2/ENST00000458540.1/ENST00000394516.1/ENST00000394510.2/ENST00000560676.1/ENST00000560579.1/ENST00000558644.1
AKAP13 A kinase (PRKA) anchor protein 13
chr15_+_94774580 0.83 2.97 5.00E-02 chr15:94774580-94774633 + TSSregion500,SENST00000543482.1/ENST00000456504.1/ENST00000556363.1
MCTP2 multiple C2 domains, transmembrane 2
chr15_+_98503887 -0.75 4.28 5.60E-02 chr15:98503887-98504027 + TSS,S ENST00000268042.6 ARRDC4 arrestin domain containing 4
chr15_+_99273361 1.72 0.67 7.71E-02 chr15:99273361-99273480 +CDS_or_noncoding_inner_intron,S
ENST00000268035.6/ENST00000558762.1/ENST00000559925.1
IGF1R insulin-like growth factor 1 receptor
chr15_-_31283771 0.49 5.33 6.33E-02 chr15:31283771-31283866 - TSS,SENST00000435680.1/ENST00000425768.1/ENST00000340566.4
MTMR10 myotubularin related protein 10
146146
Persson et al.
chr15_-_34729924 0.97 4.74 3.85E-03 chr15:34729924-34730078 - 5UTR_inner_intron,S ENST00000543376.1 GOLGA8A golgin A8 family, member
A
chr15_-_34875771 0.59 5.75 8.81E-02 chr15:34875771-34875955 - TSSregion500,S ENST00000267731.7/ENST00000268079.6 GOLGA8B golgin A8 family, member
B
chr15_-_43398205 0.48 5.03 2.58E-02 chr15:43398205-43398369 - TSS,SENST00000290650.4/ENST00000382177.2/ENST00000546274.1
UBR1 ubiquitin protein ligase E3 component n-recognin 1
chr15_-_44955746 0.43 5.96 2.99E-02 chr15:44955746-44955936 - TSS,S
ENST00000261866.7/ENST00000535302.2/ENST00000427534.2/ENST00000558319.1/ENST00000559193.1
SPG11 spastic paraplegia 11 (autosomal recessive)
chr15_-_51921818 -1.58 0.82 7.91E-02 chr15:51921818-51921973 - intergenic intergenic NA NA
chr15_-_52971505 0.47 4.39 7.03E-02 chr15:52971505-52971615 - upstream1000,S ENST00000261844.6 KIAA1370 NA
chr15_-_61133380 1.17 2.40 2.77E-04 chr15:61133380-61133539 - CDS_or_noncoding_first_intron,S
ENST00000335670.6/ENST00000551975.1/ENST00000557822.1/ENST00000559145.1/ENST00000561093.1
RORA RAR-related orphan receptor A
chr15_-_77197646 0.61 3.71 3.42E-02 chr15:77197646-77197811 - TSS,S ENST00000303521.5 SCAPERS-phase cyclin A-associated protein in the ER
chr16_+_2014895 -0.72 4.02 7.17E-02 chr16:2014895-2015093 + TSS,S ENST00000531523.1 SNHG9small nucleolar RNA host gene 9 (non-protein coding)
chr16_+_22448315 0.70 3.86 1.58E-02 chr16:22448315-22448383 + TSS,S ENST00000446662.1 RP11-368J21.1 NA
chr16_+_23883136 2.27 0.50 5.00E-02 chr16:23883136-23883211 + CDS_or_noncoding_first_intron,S ENST00000498739.1 PRKCB protein kinase C, beta
chr16_+_23890834 2.30 0.43 6.51E-02 chr16:23890834-23890850 + CDS_or_noncoding_first_intron,S ENST00000498739.1 PRKCB protein kinase C, beta
chr16_+_23912067 1.44 1.60 5.75E-02 chr16:23912067-23912076 + CDS_or_noncoding_first_intron,S ENST00000498739.1 PRKCB protein kinase C, beta
chr16_+_23914220 1.99 0.97 1.18E-02 chr16:23914220-23914337 + CDS_or_noncoding_first_intron,S ENST00000498739.1 PRKCB protein kinase C, beta
chr16_+_2816427 -1.58 0.97 6.71E-02 chr16:2816427-2816449 +CDS_or_noncoding_inner_exon,S
ENST00000382301.2/ENST00000544933.1/ENST00000301740.7
SRRM2 serine/arginine repetitive matrix 2
147147
Persson et al.
chr16_+_29817622 -0.46 4.90 3.82E-02 chr16:29817622-29817713 + TSSregion500,S ENST00000219782.5/ENST00000322945.5 MAZ
MYC-associated zinc finger protein (purine-binding transcription factor)
chr16_+_3070329 -0.87 3.46 3.10E-02 chr16:3070329-3070402 + TSS,S ENST00000341627.4 TNFRSF12Atumor necrosis factor receptor superfamily, member 12A
chr16_+_31539532 -1.02 2.96 4.02E-02 chr16:31539532-31539539 +CDS_or_noncoding_inner_exon,S
ENST00000302312.4 AHSP alpha hemoglobin stabilizing protein
chr16_+_3546158 -0.45 4.08 9.16E-02 chr16:3546158-3546174 + TSSregion500,S ENST00000459875.1 LA16C-306E5.1 NA
chr16_+_57681338 1.55 1.80 6.33E-02 chr16:57681338-57681375 + 5UTR_first_intron,S
ENST00000544297.1/ENST00000456916.1/ENST00000388812.4
GPR56 G protein-coupled receptor 56
chr16_+_57685422 2.85 0.43 5.56E-02 chr16:57685422-57685484 + 5UTR_inner_exon,S ENST00000544297.1 GPR56 G protein-coupled
receptor 56
chr16_+_67876183 -0.43 4.82 4.26E-02 chr16:67876183-67876240 + TSS,S ENST00000303596.1 THAP11 THAP domain containing 11
chr16_+_69599832 0.56 5.53 1.29E-02 chr16:69599832-69599959 + TSS,S ENST00000354436.2 NFAT5nuclear factor of activated T-cells 5, tonicity-responsive
chr16_+_81610487 2.02 0.82 1.79E-02 chr16:81610487-81610590 + CDS_or_noncoding_first_intron,S
ENST00000539778.1/ENST00000537098.1 CMIP c-Maf inducing protein
chr16_+_85833176 -0.39 8.26 2.58E-02 chr16:85833176-85833356 + TSS,S ENST00000253452.2 COX4I1 cytochrome c oxidase subunit IV isoform 1
chr16_-_2059758 -0.92 1.61 8.81E-02 chr16:2059758-2059845 - TSS,S ENST00000431526.1 ZNF598 zinc finger protein 598
chr16_-_2205324 -0.73 2.30 9.41E-02 chr16:2205324-2205430 - TSSregion500,AS ENST00000326181.6 TRAF7
TNF receptor-associated factor 7, E3 ubiquitin protein ligase
chr16_-_2827235 -0.58 6.01 1.18E-02 chr16:2827235-2827321 - TSS,S ENST00000409906.3/ENST00000262306.7 TCEB2
transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)
chr16_-_405193 1.08 3.60 6.92E-03 chr16:405193-405380 - intergenic intergenic NA NAchr16_-_4465808 1.07 1.46 8.17E-02 chr16:4465808-4465939 - TSS,S ENST00000539968.1 CORO7 coronin 7
chr16_-_68056996 -0.73 3.69 2.69E-02 chr16:68056996-68057147 - 5UTR_first_exon,S ENST00000332395.5 DDX28 DEAD (Asp-Glu-Ala-Asp)
box polypeptide 28
chr17_+_17029627 1.27 1.53 7.87E-02 chr17:17029627-17029755 +CDS_or_noncoding_inner_intron,S
ENST00000444976.1/ENST00000395804.3/ENST00000395811.3/ENST00000341712.4
MPRIP myosin phosphatase Rho interacting protein
chr17_+_34227367 1.75 1.30 2.67E-02 chr17:34227367-34227501 + intergenic intergenic NA NA
148148
Persson et al.
chr17_+_37865774 1.10 3.49 6.83E-02 chr17:37865774-37865959 + CDS_or_noncoding_first_intron,S ENST00000445658.2 ERBB2
v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
chr17_+_47293900 1.73 0.80 6.27E-02 chr17:47293900-47294035 +CDS_or_noncoding_inner_exon,S
ENST00000225941.1/ENST00000419580.2 ABI3 ABI family, member 3
chr17_+_53046052 0.79 3.24 9.63E-02 chr17:53046052-53046205 + TSS,S
ENST00000299341.4/ENST00000376352.2/ENST00000405898.1/ENST00000434978.2/ENST00000398391.2/ENST00000461444.1/ENST00000464340.1
STXBP4 syntaxin binding protein 4
chr17_+_61043565 0.72 2.93 4.37E-02 chr17:61043565-61043631 + intergenic intergenic NA NA
chr17_+_72462527 0.97 5.02 1.87E-02 chr17:72462527-72462548 + TSSregion500,S
ENST00000361933.2/ENST00000360141.3/ENST00000392625.3/ENST00000310828.5
CD300A CD300a molecule
chr17_+_73521744 0.58 4.03 9.06E-02 chr17:73521744-73521860 + TSS,SENST00000375227.3/ENST00000167462.4/ENST00000392550.2
LLGL2 lethal giant larvae homolog 2 (Drosophila)
chr17_+_7789501 1.69 0.96 1.16E-02 chr17:7789501-7789570 + CDS_or_noncoding_first_intron,S ENST00000380358.4 CHD3 chromodomain helicase
DNA binding protein 3
chr17_+_78261987 1.20 2.33 2.04E-02 chr17:78261987-78262127 + TSSregion500,S ENST00000559070.1 RNF213 ring finger protein 213
chr17_+_8316388 0.40 7.11 5.24E-02 chr17:8316388-8316578 + intergenic intergenic NA NA
chr17_-_33864635 0.59 5.93 2.42E-02 chr17:33864635-33864792 - TSSregion500,S ENST00000361112.4 SLFN12L schlafen family member 12-like
chr17_-_3749374 1.53 0.51 7.91E-02 chr17:3749374-3749439 - TSSregion500,S ENST00000158149.3 C17ORF85 NA
chr17_-_48220984 -1.86 0.48 5.27E-02 chr17:48220984-48221079 -CDS_or_noncoding_inner_exon,S
ENST00000316878.6/ENST00000501501.2/ENST00000513579.1
PPP1R9B protein phosphatase 1, regulatory subunit 9B
chr17_-_49198086 0.43 5.75 6.33E-02 chr17:49198086-49198263 - TSS,S
ENST00000262013.7/ENST00000505279.1/ENST00000357122.4/ENST00000546269.1
SPAG9 sperm associated antigen 9
chr17_-_5342333 -0.33 6.53 7.17E-02 chr17:5342333-5342501 - TSS,S ENST00000225698.3 C1QBPcomplement component 1, q subcomponent binding protein
chr17_-_56409828 0.84 3.56 9.50E-03 chr17:56409828-56409829 - intergenic intergenic NA NA
149149
Persson et al.
chr17_-_7745491 -1.74 0.78 4.63E-03 chr17:7745491-7745551 - 5UTR_first_intron,AS
ENST00000448097.1/ENST00000254846.4 KDM6B lysine (K)-specific
demethylase 6B
chr18_+_2655680 0.39 8.22 8.06E-02 chr18:2655680-2655741 + TSSregion500,S ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2666145 1.99 0.45 4.26E-02 chr18:2666145-2666206 +CDS_or_noncoding_inner_exon,S
ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2673977 0.87 2.39 3.86E-02 chr18:2673977-2674175 +CDS_or_noncoding_inner_exon,S
ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_32650149 2.06 0.46 2.84E-02 chr18:32650149-32650248 + 5UTR_inner_exon,S ENST00000413393.1 MAPRE2
microtubule-associated protein, RP/EB family, member 2
chr18_+_39535136 0.35 6.23 8.71E-02 chr18:39535136-39535324 + TSS,S ENST00000262039.2/ENST00000398870.2 PIK3C3
phosphatidylinositol 3-kinase, catalytic subunit type 3
chr18_+_54318568 0.55 4.48 6.33E-02 chr18:54318568-54318647 + TSS,SENST00000357574.2/ENST00000444065.1/ENST00000254442.3
WDR7 WD repeat domain 7
chr18_+_59854480 0.48 6.42 1.80E-02 chr18:59854480-59854597 + TSS,S ENST00000398130.2/ENST00000256858.5 KIAA1468 KIAA1468
chr18_+_59922280 -0.95 1.99 6.33E-02 chr18:59922280-59922399 +CDS_or_noncoding_inner_intron,S
ENST00000398130.2/ENST00000256858.5 KIAA1468 KIAA1468
chr18_+_72265072 0.51 4.29 7.10E-02 chr18:72265072-72265154 + TSSregion500,AS ENST00000382649.2 AC116904.1 NA
chr18_+_76829382 0.57 4.84 6.60E-02 chr18:76829382-76829482 + TSS,S
ENST00000359184.6/ENST00000426216.1/ENST00000307671.6/ENST00000490210.1/ENST00000542323.1
ATP9B ATPase, class II, type 9B
chr19_+_1274437 -2.25 0.36 8.81E-02 chr19:1274437-1274441 + 3UTR_inner_exon,S ENST00000444172.2 CIRBP cold inducible RNA
binding protein
chr19_+_12848278 -0.50 5.65 5.26E-03 chr19:12848278-12848408 + TSS,S ENST00000357332.3 ASNA1arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
chr19_+_13208010 -1.44 0.48 9.41E-02 chr19:13208010-13208018 + 3UTR_last_exon,S
ENST00000397661.1/ENST00000360105.3/ENST00000358552.3
NFIXnuclear factor I/X (CCAAT-binding transcription factor)
150150
Persson et al.
chr19_+_16254473 0.43 7.11 4.26E-02 chr19:16254473-16254655 + TSS,S ENST00000535834.1 HSH2D hematopoietic SH2 domain containing
chr19_+_16263815 1.41 1.45 5.55E-02 chr19:16263815-16263949 +CDS_or_noncoding_inner_exon,S
ENST00000253680.6/ENST00000397372.4/ENST00000535834.1
HSH2D hematopoietic SH2 domain containing
chr19_+_17295404 0.94 2.24 5.44E-02 chr19:17295404-17295548 + 5UTR_inner_intron,S ENST00000319396.5 MYO9B myosin IXB
chr19_+_1905326 -0.40 4.83 8.80E-02 chr19:1905326-1905429 + TSS,S
ENST00000452128.1/ENST00000316097.7/ENST00000414057.1/ENST00000409472.1/ENST00000329478.1/ENST00000460767.1/ENST00000489554.1
SCAMP4 secretory carrier membrane protein 4
chr19_+_3094285 -0.96 1.79 8.94E-02 chr19:3094285-3094411 + TSS,S ENST00000078429.3 GNA11
guanine nucleotide binding protein (G protein), alpha 11 (Gq class)
chr19_+_3577295 1.29 1.54 8.94E-02 chr19:3577295-3577415 +CDS_or_noncoding_inner_intron,S
ENST00000333651.6/ENST00000402569.2/ENST00000488973.1/ENST00000487894.1
HMG20B high mobility group 20B
chr19_+_39897475 -0.56 10.52 5.24E-02 chr19:39897475-39897519 + TSS,S ENST00000248673.3 ZFP36zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_39899079 -1.79 0.91 2.35E-03 chr19:39899079-39899092 + CDS_or_noncoding_last_exon,S ENST00000248673.3 ZFP36
zinc finger protein 36, C3H type, homolog (mouse)
chr19_+_41812977 -1.28 2.06 8.38E-02 chr19:41812977-41813005 + 3UTR_last_exon,S
ENST00000352456.2/ENST00000392006.2/ENST00000378215.3
HNRNPUL1 heterogeneous nuclear ribonucleoprotein U-like 1
chr19_+_45542746 0.98 2.73 5.13E-02 chr19:45542746-45542832 + TSS,S ENST00000544944.1 CLASRPCLK4-associating serine/arginine rich protein
chr19_+_45971244 -1.62 5.40 5.26E-03 chr19:45971244-45971289 + TSS,S
ENST00000417353.1/ENST00000455928.2/ENST00000353609.2/ENST00000443841.1
FOSBFBJ murine osteosarcoma viral oncogene homolog B
chr19_+_48824690 0.70 2.35 6.72E-02 chr19:48824690-48824806 +CDS_or_noncoding_first_intron,AS
ENST00000504608.1/ENST00000497803.1 CTC-241F20.2
chr19_+_49617600 0.98 1.82 7.26E-02 chr19:49617600-49617652 + TSS,S ENST00000221459.2 LIN7B lin-7 homolog B (C. elegans)
chr19_+_49999627 -0.39 9.52 8.15E-02 chr19:49999627-49999702 + TSS,S ENST00000270625.1 RPS11 ribosomal protein S11
151151
Persson et al.
chr19_+_54378500 -2.14 0.35 8.43E-02 chr19:54378500-54378549 + 3UTR_last_exon,S
ENST00000336967.3/ENST00000391771.1/ENST00000391770.4/ENST00000391769.2
MYADM myeloid-associated differentiation marker
chr19_+_6361522 -0.38 4.68 8.15E-02 chr19:6361522-6361673 + TSSregion500,S ENST00000245816.3 CLPP
ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)
chr19_-_17937246 -1.31 1.15 8.80E-02 chr19:17937246-17937415 - 3UTR_last_exon,S
ENST00000458235.1/ENST00000527670.1 JAK3 Janus kinase 3
chr19_-_2041076 -1.38 1.58 7.10E-02 chr19:2041076-2041204 -CDS_or_noncoding_inner_exon,S
ENST00000250896.3/ENST00000309340.6/ENST00000541165.1/ENST00000545627.1
MKNK2 MAP kinase interacting serine/threonine kinase 2
chr19_-_29704012 -0.43 6.11 7.10E-02 chr19:29704012-29704147 - TSS,S ENST00000304863.3 UQCRFS1ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
chr19_-_50498330 -0.86 5.92 4.48E-02 chr19:50498330-50498458 -CDS_or_noncoding_inner_exon,S
ENST00000316763.2/ENST00000377011.1/ENST00000424804.2
VRK3 vaccinia related kinase 3
chr19_-_50512488 1.64 0.49 7.91E-02 chr19:50512488-50512639 - 5UTR_inner_intron,S ENST00000443401.2 VRK3 vaccinia related kinase 3
chr1_+_100818005 0.59 6.01 1.88E-02 chr1:100818005-100818136 + TSS,SENST00000370125.2/ENST00000361544.6/ENST00000370124.3
CDC14ACDC14 cell division cycle 14 homolog A (S. cerevisiae)
chr1_+_110193969 -1.67 0.60 3.50E-02 chr1:110193969-110193982 + TSSregion500,S ENST00000411964.1 RP5-1160K1.1
chr1_+_113217056 1.14 2.17 1.59E-03 chr1:113217056-113217109 + TSS,S ENST00000369645.1 MOV10Mov10, Moloney leukemia virus 10, homolog (mouse)
chr1_+_113711575 -0.66 3.51 5.17E-02 chr1:113711575-113711613 + TSSregion500,S ENST00000457967.1 RP11-389O22.4
chr1_+_116519121 0.78 2.38 8.81E-02 chr1:116519121-116519164 + TSSregion500,S ENST00000369503.4/ENST00000369502.1 SLC22A15 solute carrier family 22,
member 15
chr1_+_118168067 -1.73 0.61 8.32E-02 chr1:118168067-118168082 + 3UTR_last_exon,S ENST00000369448.3 FAM46C family with sequence
similarity 46, member C
chr1_+_145233350 2.05 0.50 6.89E-02 chr1:145233350-145233362 + 5UTR_first_intron,S
ENST00000362074.6/ENST00000344859.3 NOTCH2NL
chr1_+_149804154 -0.67 3.53 4.80E-02 chr1:149804154-149804229 + TSSregion500,SENST00000392939.3/ENST00000369165.1/ENST00000392938.1
HIST2H4A histone cluster 2, H4a
152152
Persson et al.
chr1_+_151227171 -0.39 5.54 9.88E-02 chr1:151227171-151227268 + TSS,S
ENST00000368884.3/ENST00000368881.4/ENST00000461434.1/ENST00000462970.1/ENST00000476855.1
PSMD4proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
chr1_+_157147833 1.20 2.67 5.90E-02 chr1:157147833-157147933 + intergenic intergenic NA NA
chr1_+_158901305 0.70 6.62 2.82E-02 chr1:158901305-158901446 + TSS,S
ENST00000368140.1/ENST00000368138.3/ENST00000392252.3/ENST00000392254.2/ENST00000368135.4
PYHIN1 pyrin and HIN domain family, member 1
chr1_+_158979798 0.74 3.98 7.67E-02 chr1:158979798-158979808 + TSS,S ENST00000430894.2 IFI16 interferon, gamma-inducible protein 16
chr1_+_167737047 1.67 0.63 8.98E-02 chr1:167737047-167737075 + CDS_or_noncoding_first_intron,S
ENST00000367853.3/ENST00000474729.1 MPZL1 myelin protein zero-like 1
chr1_+_171558464 1.05 1.37 5.18E-02 chr1:171558464-171558473 +CDS_or_noncoding_inner_intron,S
ENST00000392078.3/ENST00000451306.2/ENST00000392080.3/ENST00000498596.1
PRRC2C proline-rich coiled-coil 2C
chr1_+_174128592 0.58 5.70 2.53E-02 chr1:174128592-174128765 + TSS,S ENST00000251507.4/ENST00000457696.1 RABGAP1L RAB GTPase activating
protein 1-like
chr1_+_174188243 1.23 2.71 9.72E-03 chr1:174188243-174188403 + TSS,S ENST00000367692.3 RABGAP1L RAB GTPase activating protein 1-like
chr1_+_174389237 2.25 0.84 1.80E-02 chr1:174389237-174389359 +CDS_or_noncoding_inner_intron,S
ENST00000251507.4/ENST00000367692.3 RABGAP1L RAB GTPase activating
protein 1-like
chr1_+_192605211 -1.68 0.59 8.08E-02 chr1:192605211-192605290 + TSS,SENST00000391995.2/ENST00000543215.1/ENST00000462955.1
RGS13 regulator of G-protein signaling 13
chr1_+_193091121 0.37 5.93 9.36E-02 chr1:193091121-193091296 + TSS,S ENST00000367435.3/ENST00000445394.2 CDC73
cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
chr1_+_193091322 0.93 2.11 6.68E-02 chr1:193091322-193091338 + TSSregion500,SENST00000367435.3/ENST00000445394.2/ENST00000482484.1
CDC73
cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
chr1_+_202440569 1.69 4.15 2.51E-02 chr1:202440569-202440725 + 5UTR_first_intron,S
ENST00000391959.3/ENST00000367270.4 PPP1R12B protein phosphatase 1,
regulatory subunit 12B
chr1_+_221052669 -0.60 4.51 8.61E-02 chr1:221052669-221052863 + 5UTR_first_exon,S ENST00000366903.5 HLX H2.0-like homeobox
chr1_+_228675040 -0.53 6.62 4.14E-02 chr1:228675040-228675163 + TSSregion500,S ENST00000305943.7 RNF187 ring finger protein 187
153153
Persson et al.
chr1_+_231762403 0.65 3.55 2.67E-02 chr1:231762403-231762591 + TSS,S
ENST00000535944.1/ENST00000539444.1/ENST00000295051.7/ENST00000366633.3/ENST00000366636.4/ENST00000535983.1/ENST00000537876.1/ENST00000366637.3/ENST00000366638.5/ENST00000532576.2/ENST00000439617.2/ENST00000317586.4
DISC1 disrupted in schizophrenia 1
chr1_+_235147861 -1.10 2.93 7.06E-02 chr1:235147861-235148060 + intergenic intergenic NA NA
chr1_+_236030422 -1.14 1.62 5.85E-02 chr1:236030422-236030615 + TSSregion500,AS
ENST00000389794.3/ENST00000389793.2/ENST00000468626.1
LYST lysosomal trafficking regulator
chr1_+_24018267 -0.55 8.15 5.27E-02 chr1:24018267-24018316 + TSS,S ENST00000374550.3 RPL11 ribosomal protein L11
chr1_+_243419304 0.48 4.60 8.80E-02 chr1:243419304-243419465 + TSS,S
ENST00000355875.4/ENST00000366541.3/ENST00000343783.6/ENST00000391846.1/ENST00000490065.1
SDCCAG8 serologically defined colon cancer antigen 8
chr1_+_246690894 2.35 0.42 8.08E-02 chr1:246690894-246690947 + CDS_or_noncoding_last_intron,S ENST00000412354.1 RP11-
690C23.5
chr1_+_29424310 -0.76 2.88 7.95E-02 chr1:29424310-29424422 + TSSregion500,S ENST00000462032.1 EPB41
erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)
chr1_+_36396682 0.46 4.53 6.13E-02 chr1:36396682-36396870 + TSS,S ENST00000397828.2/ENST00000246314.6 EIF2C3 eukaryotic translation
initiation factor 2C, 3chr1_+_47845938 1.98 0.83 1.72E-02 chr1:47845938-47845953 + intergenic intergenic NA NA
chr1_+_53289085 -1.32 0.86 9.54E-02 chr1:53289085-53289215 + 3UTR_last_exon,S ENST00000294353.6 ZYG11B zyg-11 homolog B (C.
elegans)
chr1_+_55273150 1.68 1.96 2.52E-02 chr1:55273150-55273328 +CDS_or_noncoding_inner_exon,S
ENST00000358193.3/ENST00000371273.3 C1ORF177 NA
chr1_+_67390620 0.38 4.86 9.30E-02 chr1:67390620-67390724 + TSS,S
ENST00000357692.2/ENST00000401041.1/ENST00000371016.1/ENST00000371014.1/ENST00000371012.2
MIER1mesoderm induction early response 1 homolog (Xenopus laevis)
chr1_+_67773024 1.62 1.28 3.70E-02 chr1:67773024-67773089 + TSS,S ENST00000371000.1/ENST00000262345.1 IL12RB2 interleukin 12 receptor,
beta 2
154154
Persson et al.
chr1_+_67773521 1.13 2.28 6.60E-02 chr1:67773521-67773591 + TSS,S ENST00000541374.1 IL12RB2 interleukin 12 receptor, beta 2
chr1_+_84609941 0.31 7.58 9.89E-02 chr1:84609941-84610054 + TSS,S ENST00000370685.3/ENST00000470673.1 PRKACB protein kinase, cAMP-
dependent, catalytic, beta
chr1_+_97187205 0.73 4.74 2.78E-03 chr1:97187205-97187402 + TSS,S
ENST00000236228.6/ENST00000543738.1/ENST00000370197.1/ENST00000370198.1/ENST00000426398.2/ENST00000394184.3/ENST00000482253.1/ENST00000476419.1/ENST00000460706.1
PTBP2 polypyrimidine tract binding protein 2
chr1_-_109506011 0.49 4.13 7.06E-02 chr1:109506011-109506152 - TSS,S
ENST00000357393.4/ENST00000356970.2/ENST00000369971.2/ENST00000415331.1/ENST00000369976.1
AKNAD1 AKNA domain containing 1
chr1_-_115053701 0.46 6.17 9.72E-03 chr1:115053701-115053873 - TSS,S ENST00000358465.2/ENST00000369543.2 TRIM33 tripartite motif containing
33
chr1_-_153918391 1.65 0.59 5.00E-02 chr1:153918391-153918513 - 5UTR_first_intron,S ENST00000361217.4 DENND4B DENN/MADD domain
containing 4B
chr1_-_156786472 0.77 6.18 7.17E-02 chr1:156786472-156786650 - TSS,SENST00000368198.3/ENST00000392306.2/ENST00000495306.1
SH2D2A SH2 domain containing 2A
chr1_-_162381782 1.11 6.24 2.52E-02 chr1:162381782-162381979 - TSS,SENST00000367929.2/ENST00000359567.3/ENST00000493550.1
SH2D1B SH2 domain containing 1B
chr1_-_167409896 2.13 0.90 1.87E-03 chr1:167409896-167410008 -CDS_or_noncoding_inner_exon,S
ENST00000362089.5/ENST00000392122.3/ENST00000483825.1
CD247 CD247 molecule
chr1_-_167434389 1.66 0.77 8.15E-02 chr1:167434389-167434547 - CDS_or_noncoding_first_intron,S
ENST00000362089.5/ENST00000392122.3/ENST00000483825.1/ENST00000479979.1
CD247 CD247 molecule
chr1_-_170043623 0.54 4.12 7.99E-02 chr1:170043623-170043806 - TSS,S ENST00000367767.1 KIFAP3 kinesin-associated protein 3
chr1_-_173446127 0.75 2.79 3.47E-02 chr1:173446127-173446327 - TSS,S ENST00000421168.2 AL645568.1 NA
chr1_-_176175961 0.83 2.24 7.03E-02 chr1:176175961-176175963 - TSSregion500,S
ENST00000367665.3/ENST00000367667.1/ENST00000498306.1/ENST00000491600.1
RFWD2ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
155155
Persson et al.
chr1_-_176176231 0.52 6.20 9.72E-03 chr1:176176231-176176427 - TSS,S ENST00000367665.3/ENST00000436424.1 RFWD2
ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
chr1_-_206306021 0.70 3.70 6.33E-02 chr1:206306021-206306190 - TSS,S ENST00000436158.1/ENST00000455672.1 RP11-38J22.6
chr1_-_235292089 -0.52 6.62 1.54E-02 chr1:235292089-235292278 - TSS,S ENST00000366607.4 TOMM20translocase of outer mitochondrial membrane 20 homolog (yeast)
chr1_-_27816117 1.94 0.46 3.16E-02 chr1:27816117-27816310 - 5UTR_first_intron,S
ENST00000430629.2/ENST00000536657.1 WASF2 WAS protein family,
member 2chr1_-_28437760 -1.68 0.56 9.44E-02 chr1:28437760-28437836 - intergenic intergenic NA NA
chr1_-_32401999 1.11 2.49 3.48E-02 chr1:32401999-32402087 - 5UTR_first_intron,S
ENST00000534796.1/ENST00000344035.5/ENST00000356536.3/ENST00000468531.1
PTP4A2protein tyrosine phosphatase type IVA, member 2
chr1_-_51425737 0.46 4.70 5.18E-02 chr1:51425737-51425916 - TSS,S ENST00000371778.4/ENST00000543607.1 FAF1 Fas (TNFRSF6)
associated factor 1
chr1_-_53793650 0.81 2.19 8.73E-02 chr1:53793650-53793835 - TSS,SENST00000306052.6/ENST00000371454.2/ENST00000480045.1
LRP8low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
chr1_-_89488399 0.61 4.14 7.99E-02 chr1:89488399-89488591 - TSS,S
ENST00000489444.1/ENST00000370482.1/ENST00000370481.3/ENST00000235878.4/ENST00000475853.1
GBP3 guanylate binding protein 3
chr1_-_93250595 0.65 3.75 6.75E-02 chr1:93250595-93250734 - TSS,S ENST00000474806.1 EVI5 ecotropic viral integration site 5
chr1_-_98386462 0.68 7.99 2.09E-06 chr1:98386462-98386637 - TSS,S
ENST00000370192.3/ENST00000423006.2/ENST00000306031.5/ENST00000460019.1
DPYD dihydropyrimidine dehydrogenase
chr20_+_10415814 0.65 4.05 3.28E-02 chr20:10415814-10416011 + TSS,S ENST00000334534.5 C20ORF94 NA
chr20_+_15497339 -0.93 2.61 9.36E-02 chr20:15497339-15497349 + 5UTR_inner_intron,S ENST00000402914.1 MACROD2 MACRO domain
containing 2
chr20_+_30193050 -2.75 1.67 6.13E-02 chr20:30193050-30193211 + TSS,S ENST00000376112.3/ENST00000376105.3 ID1
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
156156
Persson et al.
chr20_+_37149028 1.94 0.58 5.58E-02 chr20:37149028-37149193 +CDS_or_noncoding_inner_intron,S
ENST00000262879.6/ENST00000397042.3/ENST00000304939.4/ENST00000397038.1/ENST00000397040.1/ENST00000438490.1/ENST00000461423.1
RALGAPBRal GTPase activating protein, beta subunit (non-catalytic)
chr20_+_37707484 2.17 1.33 1.29E-02 chr20:37707484-37707551 + intergenic intergenic NA NA
chr20_+_400344 1.43 0.77 8.03E-02 chr20:400344-400450 +CDS_or_noncoding_inner_exon,S
ENST00000382214.3/ENST00000356286.5/ENST00000415942.1/ENST00000353660.3/ENST00000400244.3/ENST00000382181.2
RBCK1RanBP-type and C3HC4-type zinc finger containing 1
chr20_+_50419024 -1.66 0.93 3.48E-02 chr20:50419024-50419033 + TSSregion500,AS
ENST00000217086.3/ENST00000371539.3/ENST00000395997.3
SALL4 sal-like 4 (Drosophila)
chr20_+_8112866 0.78 4.57 9.50E-03 chr20:8112866-8113041 + TSSregion500,S
ENST00000378641.3/ENST00000338037.6/ENST00000378637.2/ENST00000404098.2
PLCB1phospholipase C, beta 1 (phosphoinositide-specific)
chr20_-_1350022 -1.96 0.78 1.48E-02 chr20:1350022-1350071 - 3UTR_last_exon,S ENST00000400137.4 FKBP1A FK506 binding protein
1A, 12kDa
chr20_-_20693126 0.51 5.00 1.18E-02 chr20:20693126-20693326 - TSS,SENST00000202677.6/ENST00000424490.1/ENST00000438161.1
RALGAPA2Ral GTPase activating protein, alpha subunit 2 (catalytic)
chr21_+_17102256 0.55 5.16 1.76E-02 chr21:17102256-17102425 + TSS,SENST00000285679.6/ENST00000351097.5/ENST00000285681.2
USP25 ubiquitin specific peptidase 25
chr21_+_45773425 0.66 4.01 3.61E-02 chr21:45773425-45773535 + TSSregion500,SENST00000397928.1/ENST00000397932.2/ENST00000300481.9
TRPM2transient receptor potential cation channel, subfamily M, member 2
chr21_-_36421080 1.48 0.73 8.06E-02 chr21:36421080-36421110 - 5UTR_inner_intron,S
ENST00000431176.1/ENST00000399245.2/ENST00000486278.2
RUNX1 runt-related transcription factor 1
chr21_-_38740203 -1.42 0.68 7.06E-02 chr21:38740203-38740251 - 5UTR_first_intron,AS
ENST00000338785.3/ENST00000455097.1/ENST00000426672.1
DYRK1Adual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A
chr22_+_19414171 -1.05 2.98 4.20E-02 chr22:19414171-19414187 + 5UTR_first_intron,AS ENST00000541063.1 HIRA
HIR histone cell cycle regulation defective homolog A (S. cerevisiae)
157157
Persson et al.
chr22_+_44584298 -0.79 3.42 7.91E-02 chr22:44584298-44584310 + CDS_or_noncoding_first_exon,S ENST00000468564.1 PARVG parvin, gamma
chr22_-_31682123 -1.63 1.02 4.26E-02 chr22:31682123-31682203 - CDS_or_noncoding_last_intron,S
ENST00000215912.5/ENST00000416925.1/ENST00000441972.1/ENST00000487265.2/ENST00000480654.1/ENST00000493034.1
PIK3IP1phosphoinositide-3-kinase interacting protein 1
chr22_-_38539356 1.00 1.91 6.13E-02 chr22:38539356-38539520 - TSS,S ENST00000498338.1 PLA2G6phospholipase A2, group VI (cytosolic, calcium-independent)
chr22_-_39715561 -0.48 7.57 9.36E-02 chr22:39715561-39715684 - TSS,S
ENST00000402527.1/ENST00000427905.1/ENST00000420536.1/ENST00000484615.1/ENST00000460589.1/ENST00000461967.1/ENST00000498462.1/ENST00000459859.1
RPL3 ribosomal protein L3
chr22_-_50523815 0.97 3.90 3.47E-02 chr22:50523815-50524009 - TSS,SENST00000538737.1/ENST00000431262.2/ENST00000535444.1
MLC1megalencephalic leukoencephalopathy with subcortical cysts 1
chr2_+_102353931 1.92 1.49 9.72E-03 chr2:102353931-102353966 + CDS_or_noncoding_first_intron,S ENST00000417294.1 MAP4K4
mitogen-activated protein kinase kinase kinase kinase 4
chr2_+_103034997 0.92 5.47 6.38E-03 chr2:103034997-103035149 + TSS,S ENST00000264260.2 IL18RAP interleukin 18 receptor accessory protein
chr2_+_120687240 0.61 6.12 8.98E-02 chr2:120687240-120687438 + TSS,S ENST00000544261.1 PTPN4
protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
chr2_+_130939729 -0.54 5.91 3.15E-02 chr2:130939729-130939893 + TSS,S ENST00000409255.1/ENST00000455239.1 MZT2B mitotic spindle organizing
protein 2Bchr2_+_143828458 0.77 7.46 6.27E-02 chr2:143828458-143828623 + intergenic intergenic NA NA
chr2_+_143886870 0.55 8.21 1.32E-02 chr2:143886870-143887014 + TSS,S ENST00000295095.6/ENST00000552641.1 ARHGAP15 Rho GTPase activating
protein 15
chr2_+_144020119 1.28 3.39 9.07E-03 chr2:144020119-144020139 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
chr2_+_144025595 1.26 1.77 5.55E-02 chr2:144025595-144025764 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
158158
Persson et al.
chr2_+_144041151 2.02 1.00 7.00E-02 chr2:144041151-144041231 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
chr2_+_144076092 1.24 2.46 2.51E-02 chr2:144076092-144076290 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
chr2_+_144139434 1.52 1.23 7.95E-02 chr2:144139434-144139569 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
chr2_+_144187570 1.97 0.68 2.15E-02 chr2:144187570-144187769 +CDS_or_noncoding_inner_intron,S
ENST00000295095.6/ENST00000552641.1/ENST00000469117.1
ARHGAP15 Rho GTPase activating protein 15
chr2_+_178077513 1.41 1.16 5.44E-02 chr2:178077513-178077539 + TSSregion500,S
ENST00000392524.2/ENST00000411529.1/ENST00000416446.1/ENST00000420139.2/ENST00000435711.1
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3
chr2_+_197076186 -1.63 1.21 6.33E-02 chr2:197076186-197076333 +CDS_or_noncoding_last_intron,AS
ENST00000409111.1/ENST00000260983.2 HECW2
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
chr2_+_199716837 -0.79 5.08 4.12E-02 chr2:199716837-199716853 + intergenic intergenic NA NA
chr2_+_202047797 0.44 5.62 9.33E-02 chr2:202047797-202047887 + TSS,S
ENST00000272879.5/ENST00000438843.1/ENST00000374650.3/ENST00000460140.1
CASP10caspase 10, apoptosis-related cysteine peptidase
chr2_+_203043983 -0.70 2.86 8.98E-02 chr2:203043983-203044092 + TSS,S ENST00000429685.1 AC079354.2
chr2_+_203630599 -1.05 1.60 8.55E-02 chr2:203630599-203630767 + 3UTR_last_exon,S
ENST00000303116.6/ENST00000392238.2 FAM117B family with sequence
similarity 117, member B
chr2_+_209130906 0.47 6.33 2.80E-02 chr2:209130906-209131086 + TSS,S
ENST00000264380.4/ENST00000392200.1/ENST00000392202.3/ENST00000443896.1/ENST00000308862.6/ENST00000407449.1/ENST00000422495.1
PIKFYVE phosphoinositide kinase, FYVE finger containing
chr2_+_223725685 0.42 5.62 3.43E-02 chr2:223725685-223725816 + TSS,S ENST00000535678.1 ACSL3acyl-CoA synthetase long-chain family member 3
chr2_+_231110481 2.53 0.37 1.15E-02 chr2:231110481-231110613 +CDS_or_noncoding_inner_exon,S
ENST00000392044.2/ENST00000350136.5/ENST00000392045.3/ENST00000417495.2/ENST00000420434.3
SP140 SP140 nuclear body protein
159159
Persson et al.
chr2_+_232826324 0.55 4.38 9.72E-03 chr2:232826324-232826474 + TSS,S
ENST00000409401.3/ENST00000390005.5/ENST00000445090.1/ENST00000441279.1/ENST00000431466.2
DIS3L2DIS3 mitotic control homolog (S. cerevisiae)-like 2
chr2_+_24236107 -1.20 1.14 6.72E-02 chr2:24236107-24236181 +CDS_or_noncoding_inner_exon,S
ENST00000338315.4/ENST00000406420.3/ENST00000495018.1
MFSD2Bmajor facilitator superfamily domain containing 2B
chr2_+_29237233 1.01 2.21 6.33E-02 chr2:29237233-29237376 + TSS,S ENST00000465300.1 FAM179A family with sequence similarity 179, member A
chr2_+_29337918 1.21 1.25 3.75E-02 chr2:29337918-29337971 + TSSregion500,SENST00000456385.1/ENST00000320081.5/ENST00000379543.5
CLIP4CAP-GLY domain containing linker protein family, member 4
chr2_+_30457125 -0.54 4.67 9.33E-02 chr2:30457125-30457217 + TSS,S ENST00000484150.1 LBHlimb bud and heart development homolog (mouse)
chr2_+_43453937 -0.91 1.86 7.48E-02 chr2:43453937-43454014 + TSSregion500,AS ENST00000282388.3 ZFP36L2 zinc finger protein 36,
C3H type-like 2
chr2_+_61404537 0.61 5.28 3.37E-03 chr2:61404537-61404667 + TSS,S
ENST00000357022.2/ENST00000394457.2/ENST00000463681.1/ENST00000489653.1
AHSA2
AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)
chr2_+_65495021 2.04 0.84 7.79E-02 chr2:65495021-65495028 + CDS_or_noncoding_last_intron,S
ENST00000260641.5/ENST00000377982.4/ENST00000535303.1
ACTR2 ARP2 actin-related protein 2 homolog (yeast)
chr2_+_68962105 1.50 1.72 1.07E-02 chr2:68962105-68962116 + TSSregion500,S
ENST00000295381.3/ENST00000409202.3/ENST00000467265.1/ENST00000488795.1/ENST00000456116.2/ENST00000485573.1/ENST00000463061.1/ENST00000485700.1/ENST00000496266.1
ARHGAP25 Rho GTPase activating protein 25
160160
Persson et al.
chr2_+_71558805 0.43 6.53 4.30E-02 chr2:71558805-71558997 + TSS,S
ENST00000377802.2/ENST00000355812.3/ENST00000264447.4/ENST00000409544.1/ENST00000455226.1/ENST00000454278.1/ENST00000437658.1/ENST00000417778.1/ENST00000454122.1/ENST00000464375.1/ENST00000475743.1/ENST00000487707.1
ZNF638 zinc finger protein 638
chr2_+_95740631 -1.07 2.28 3.47E-02 chr2:95740631-95740768 + intergenic intergenic NA NA
chr2_+_98329970 2.48 0.64 3.72E-03 chr2:98329970-98329976 + TSSregion500,S ENST00000264972.5/ENST00000483781.1 ZAP70
zeta-chain (TCR) associated protein kinase 70kDa
chr2_+_99061292 0.41 6.47 7.94E-02 chr2:99061292-99061491 + TSS,S
ENST00000409016.3/ENST00000409851.3/ENST00000409463.1/ENST00000545415.1/ENST00000074304.5/ENST00000409540.3
INPP4Ainositol polyphosphate-4-phosphatase, type I, 107kDa
chr2_-_114514074 0.40 5.12 3.61E-02 chr2:114514074-114514261 - TSS,S ENST00000409342.1/ENST00000498768.1 SLC35F5 solute carrier family 35,
member F5
chr2_-_136875661 -0.70 9.95 6.83E-02 chr2:136875661-136875767 - TSS,S ENST00000241393.3/ENST00000537957.1 CXCR4 chemokine (C-X-C motif)
receptor 4
chr2_-_15701338 0.46 5.09 6.28E-02 chr2:15701338-15701511 - TSS,S ENST00000441750.1/ENST00000281513.5 NBAS neuroblastoma amplified
sequence
chr2_-_166651105 0.56 4.61 4.23E-02 chr2:166651105-166651237 - TSS,SENST00000392701.3/ENST00000412248.1/ENST00000431484.1
GALNT3
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
chr2_-_169103949 0.69 3.98 8.80E-02 chr2:169103949-169104145 - 5UTR_first_exon,S ENST00000355999.4 STK39 serine threonine kinase
39
chr2_-_192015642 0.48 6.21 9.33E-02 chr2:192015642-192015797 - TSS,SENST00000409995.1/ENST00000495849.1/ENST00000495326.1
STAT4 signal transducer and activator of transcription 4
chr2_-_192700462 1.74 0.53 5.27E-02 chr2:192700462-192700500 - 3UTR_last_exon,S ENST00000304141.4 SDPR serum deprivation
response
chr2_-_198175391 0.41 6.94 6.71E-02 chr2:198175391-198175567 - TSS,S
ENST00000409153.1/ENST00000539527.1/ENST00000409919.1/ENST00000447713.1/ENST00000463879.1
ANKRD44 ankyrin repeat domain 44
161161
Persson et al.
chr2_-_20550419 0.40 5.83 7.88E-02 chr2:20550419-20550614 - TSS,SENST00000403432.1/ENST00000424110.1/ENST00000420234.1
PUM2 pumilio homolog 2 (Drosophila)
chr2_-_24149923 0.70 3.41 6.33E-02 chr2:24149923-24150085 - TSS,SENST00000238789.5/ENST00000442596.1/ENST00000439915.1
ATAD2B ATPase family, AAA domain containing 2B
chr2_-_39664255 0.70 3.26 6.27E-02 chr2:39664255-39664449 - TSS,SENST00000341681.5/ENST00000429397.1/ENST00000437968.1
MAP4K3mitogen-activated protein kinase kinase kinase kinase 3
chr2_-_40679155 0.72 4.44 1.63E-02 chr2:40679155-40679298 - TSS,S ENST00000406785.1 SLC8A1solute carrier family 8 (sodium/calcium exchanger), member 1
chr2_-_8464701 1.67 2.34 1.76E-02 chr2:8464701-8464864 - TSS,S ENST00000430192.1 LINC00299 long intergenic non-protein coding RNA 299
chr2_-_85829443 1.75 0.65 7.17E-02 chr2:85829443-85829549 - TSS,S ENST00000409668.1 TMEM150A transmembrane protein 150A
chr2_-_86790422 0.92 1.65 7.49E-02 chr2:86790422-86790436 - TSSregion500,SENST00000409225.2/ENST00000393773.3/ENST00000485465.1
CHMP3 charged multivesicular body protein 3
chr3_+_122283346 1.56 0.81 1.69E-02 chr3:122283346-122283395 + CDS_or_noncoding_first_exon,S
ENST00000296161.4/ENST00000383661.3 DTX3L deltex 3-like (Drosophila)
chr3_+_134514064 1.56 1.90 3.35E-02 chr3:134514064-134514224 + TSS,S ENST00000482618.1/ENST00000398015.3 EPHB1 EPH receptor B1
chr3_+_134920041 -1.06 2.65 5.97E-02 chr3:134920041-134920045 +CDS_or_noncoding_inner_intron,S
ENST00000398015.3/ENST00000493838.1 EPHB1 EPH receptor B1
chr3_+_14076729 -0.91 3.70 9.33E-02 chr3:14076729-14076747 + 5UTR_first_intron,S
ENST00000528312.1/ENST00000424053.1/ENST00000429201.1/ENST00000326972.8/ENST00000529129.1
TPRXL tetra-peptide repeat homeobox-like
chr3_+_142842343 1.36 0.77 6.09E-02 chr3:142842343-142842375 + TSSregion500,S ENST00000483262.1 RP11-80H8.4
chr3_+_151962118 0.41 7.33 4.26E-02 chr3:151962118-151962193 +CDS_or_noncoding_inner_exon,S
ENST00000477171.1 MBNL1 muscleblind-like splicing regulator 1
chr3_+_152037421 1.40 2.67 1.18E-02 chr3:152037421-152037436 + 5UTR_first_intron,S
ENST00000495875.2/ENST00000493459.1/ENST00000459747.1/ENST00000460591.1
MBNL1 muscleblind-like splicing regulator 1
chr3_+_152038379 1.53 1.81 3.40E-02 chr3:152038379-152038501 + 5UTR_first_intron,S
ENST00000495875.2/ENST00000493459.1/ENST00000459747.1/ENST00000460591.1
MBNL1 muscleblind-like splicing regulator 1
162162
Persson et al.
chr3_+_171757337 0.60 5.53 2.56E-03 chr3:171757337-171757442 + TSS,SENST00000415807.2/ENST00000392699.1/ENST00000421757.1
FNDC3B fibronectin type III domain containing 3B
chr3_+_187871671 0.79 3.50 2.82E-02 chr3:187871671-187871727 + TSS,S ENST00000414139.1 LPPLIM domain containing preferred translocation partner in lipoma
chr3_+_187871940 0.89 3.12 7.46E-03 chr3:187871940-187872004 + 5UTR_first_intron,S
ENST00000430340.1/ENST00000414139.1/ENST00000448637.1/ENST00000416784.1/ENST00000454789.1
LPPLIM domain containing preferred translocation partner in lipoma
chr3_+_197677027 -0.42 7.78 3.23E-02 chr3:197677027-197677103 + TSS,S
ENST00000448864.1/ENST00000429437.1/ENST00000485439.1/ENST00000496582.1/ENST00000329092.8
RPL35A ribosomal protein L35a
chr3_+_197880100 1.20 1.61 8.80E-02 chr3:197880100-197880150 +CDS_or_noncoding_inner_exon,S
ENST00000431569.1 FAM157A family with sequence similarity 157, member A
chr3_+_24513404 -0.97 3.82 1.76E-02 chr3:24513404-24513423 + 5UTR_first_intron,AS
ENST00000396671.2/ENST00000356447.4/ENST00000416420.1/ENST00000413780.1/ENST00000415021.1/ENST00000447875.1/ENST00000453729.2/ENST00000431815.1/ENST00000447414.1/ENST00000416811.2/ENST00000428492.1/ENST00000418247.1
THRB thyroid hormone receptor, beta
chr3_+_42632316 -0.44 5.33 6.27E-02 chr3:42632316-42632406 + TSSregion500,S ENST00000011691.4/ENST00000474941.1 SS18L2
synovial sarcoma translocation gene on chromosome 18-like 2
chr3_+_42641962 1.53 0.80 5.40E-02 chr3:42641962-42641993 + TSSregion500,S
ENST00000232978.8/ENST00000429888.1/ENST00000442970.1/ENST00000445842.1/ENST00000468735.2/ENST00000460910.1/ENST00000487466.1/ENST00000459950.1/ENST00000478488.1
NKTR natural killer-tumor recognition sequence
163163
Persson et al.
chr3_+_42642112 0.45 5.64 8.31E-02 chr3:42642112-42642235 + TSS,S
ENST00000429888.1/ENST00000442970.1/ENST00000468735.2/ENST00000460910.1/ENST00000487466.1/ENST00000459950.1
NKTR natural killer-tumor recognition sequence
chr3_+_51428637 -0.53 4.46 7.95E-02 chr3:51428637-51428755 + TSS,S ENST00000323686.4 RBM15B RNA binding motif protein 15B
chr3_+_63850179 1.16 1.57 1.16E-02 chr3:63850179-63850271 + TSS,S
ENST00000398590.3/ENST00000295900.6/ENST00000474513.2/ENST00000474112.1
ATXN7 ataxin 7
chr3_+_97540792 0.58 3.71 4.02E-02 chr3:97540792-97540948 + TSS,S ENST00000419587.1 AC110491.1 NA
chr3_-_105587737 0.47 6.06 8.43E-02 chr3:105587737-105587910 - TSS,SENST00000264122.4/ENST00000405772.1/ENST00000403724.1
CBLB Cbl proto-oncogene, E3 ubiquitin protein ligase B
chr3_-_114866047 0.62 3.97 6.32E-02 chr3:114866047-114866194 - TSS,S ENST00000357258.3/ENST00000488663.1 ZBTB20 zinc finger and BTB
domain containing 20
chr3_-_119813135 0.49 6.14 1.16E-02 chr3:119813135-119813335 - TSS,S ENST00000264235.8 GSK3B glycogen synthase kinase 3 beta
chr3_-_13009094 -0.84 4.58 2.41E-02 chr3:13009094-13009256 - TSS,S ENST00000273221.4 IQSEC1 IQ motif and Sec7 domain 1
chr3_-_141944296 0.69 4.13 3.07E-02 chr3:141944296-141944478 - TSS,S
ENST00000492097.1/ENST00000480757.1/ENST00000392993.2/ENST00000466685.2/ENST00000544571.1/ENST00000487672.1/ENST00000472759.1/ENST00000489085.1
GK5 glycerol kinase 5 (putative)
chr3_-_142297555 0.45 4.16 7.26E-02 chr3:142297555-142297744 - TSS,SENST00000350721.4/ENST00000383101.3/ENST00000507148.1
ATR ataxia telangiectasia and Rad3 related
chr3_-_143567230 0.66 5.75 1.21E-04 chr3:143567230-143567355 - TSS,SENST00000474727.2/ENST00000474151.1/ENST00000498717.2
SLC9A9
solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9
chr3_-_151923166 0.63 3.30 4.68E-02 chr3:151923166-151923339 - intergenic intergenic NA NA
chr3_-_169482780 -0.60 3.79 8.17E-02 chr3:169482780-169482971 - TSS,S ENST00000363312.1 TERC telomerase RNA component
chr3_-_171178062 0.49 5.70 7.28E-02 chr3:171178062-171178262 - TSS,S
ENST00000436636.2/ENST00000369326.5/ENST00000538048.1/ENST00000341852.6/ENST00000465393.1
TNIK TRAF2 and NCK interacting kinase
164164
Persson et al.
chr3_-_42003514 0.73 3.75 2.58E-02 chr3:42003514-42003686 - TSS,S
ENST00000453224.1/ENST00000431379.1/ENST00000414606.1/ENST00000459802.1/ENST00000460978.1
ULK4 unc-51-like kinase 4 (C. elegans)
chr4_+_106394618 -1.58 0.72 6.72E-02 chr4:106394618-106394814 + TSSregion500,AS ENST00000502596.1 PPA2 pyrophosphatase
(inorganic) 2
chr4_+_113218425 0.45 6.74 5.70E-02 chr4:113218425-113218601 + TSS,S
ENST00000458497.1/ENST00000309610.6/ENST00000177648.9/ENST00000504176.2/ENST00000509722.1/ENST00000505127.1/ENST00000515330.1/ENST00000515106.1/ENST00000505176.1/ENST00000502366.1/ENST00000509688.1/ENST00000426472.2/ENST00000504488.1
ALPK1 alpha-kinase 1
chr4_+_117265139 1.19 1.04 6.16E-02 chr4:117265139-117265257 + intergenic intergenic NA NAchr4_+_119199844 -0.88 6.14 8.08E-02 chr4:119199844-119199924 + TSS,S ENST00000500560.1 SNHG8 NAchr4_+_123012762 -1.97 0.54 2.69E-02 chr4:123012762-123012763 + intergenic intergenic NA NAchr4_+_123073450 0.42 5.97 8.80E-02 chr4:123073450-123073647 + TSS,S ENST00000264501.4 KIAA1109 KIAA1109
chr4_+_1243038 -1.14 1.23 9.18E-02 chr4:1243038-1243077 + TSSregion500,S ENST00000507044.1 C4ORF42 NA
chr4_+_146677162 -0.89 2.71 5.00E-02 chr4:146677162-146677176 + CDS_or_noncoding_last_intron,S ENST00000510096.1 C4ORF51 NA
chr4_+_152330271 1.53 1.51 2.78E-03 chr4:152330271-152330413 + TSS,SENST00000503146.1/ENST00000435205.1/ENST00000508198.1
FAM160A1 family with sequence similarity 160, member A1
chr4_+_152833938 1.21 1.67 4.58E-02 chr4:152833938-152834099 +CDS_or_noncoding_first_intron,AS
ENST00000510416.1 RP11-73G16.3
chr4_+_181271403 -1.26 1.41 7.91E-02 chr4:181271403-181271599 + intergenic intergenic NA NA
chr4_+_184020237 0.96 2.00 6.60E-02 chr4:184020237-184020434 + TSSregion500,S
ENST00000403733.3/ENST00000378925.3/ENST00000508614.1/ENST00000513834.1/ENST00000448232.2
WWC2 WW and C2 domain containing 2
chr4_+_2538329 0.46 5.20 4.62E-02 chr4:2538329-2538528 +CDS_or_noncoding_inner_intron,S
ENST00000508235.1 RNF4 ring finger protein 4
165165
Persson et al.
chr4_+_2813932 0.51 5.55 6.33E-02 chr4:2813932-2814108 + TSS,S
ENST00000442312.2/ENST00000502260.1/ENST00000435136.2/ENST00000511185.1
SH3BP2 SH3-domain binding protein 2
chr4_+_2965289 1.05 1.20 7.10E-02 chr4:2965289-2965398 + TSS,S ENST00000398051.4/ENST00000503518.1 GRK4 G protein-coupled
receptor kinase 4chr4_+_35068262 -1.75 0.69 2.04E-02 chr4:35068262-35068268 + intergenic intergenic NA NA
chr4_+_37912620 2.06 0.86 2.52E-02 chr4:37912620-37912799 + 5UTR_first_intron,S ENST00000454732.2 TBC1D1
TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
chr4_+_72052810 1.55 0.94 1.58E-02 chr4:72052810-72052994 + TSSregion500,SENST00000264485.5/ENST00000425175.1/ENST00000351898.6
SLC4A4solute carrier family 4, sodium bicarbonate cotransporter, member 4
chr4_+_89300166 0.64 2.95 8.65E-02 chr4:89300166-89300220 + TSS,S ENST00000502870.1 HERC6
HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
chr4_-_107237292 0.62 3.56 9.23E-02 chr4:107237292-107237440 - TSS,S
ENST00000361687.4/ENST00000394706.3/ENST00000467183.2/ENST00000394708.2/ENST00000509532.1/ENST00000507696.1
TBCK TBC1 domain containing kinase
chr4_-_111119637 1.00 2.39 3.50E-02 chr4:111119637-111119821 - TSS,S ENST00000394607.3/ENST00000506461.1 ELOVL6 ELOVL fatty acid
elongase 6
chr4_-_130014582 0.47 6.17 8.43E-02 chr4:130014582-130014775 - TSS,S
ENST00000281142.5/ENST00000434680.1/ENST00000511426.1/ENST00000503401.1
SCLT1 sodium channel and clathrin linker 1
chr4_-_140098331 0.57 4.22 3.48E-02 chr4:140098331-140098392 - TSS,SENST00000394235.1/ENST00000511184.1/ENST00000511006.1
ELF2E74-like factor 2 (ets domain transcription factor)
chr4_-_147442994 0.48 4.44 8.80E-02 chr4:147442994-147443132 - TSS,S
ENST00000432059.2/ENST00000335472.7/ENST00000394062.3/ENST00000394059.4/ENST00000502607.1/ENST00000507560.1
SLC10A7
solute carrier family 10 (sodium/bile acid cotransporter family), member 7
chr4_-_151936374 0.65 4.72 1.49E-02 chr4:151936374-151936442 - TSS,SENST00000510413.1/ENST00000507224.1/ENST00000514435.1
LRBALPS-responsive vesicle trafficking, beach and anchor containing
chr4_-_154605156 -1.46 1.45 5.56E-02 chr4:154605156-154605348 - intergenic intergenic NA NAchr4_-_48116463 1.46 3.90 9.50E-03 chr4:48116463-48116595 - TSS,S ENST00000506073.1 TXK TXK tyrosine kinase
166166
Persson et al.
chr4_-_48782181 0.41 4.93 8.17E-02 chr4:48782181-48782341 - TSS,S
ENST00000358350.4/ENST00000264319.7/ENST00000537810.1/ENST00000507711.1/ENST00000505437.1/ENST00000502520.1/ENST00000514783.1/ENST00000509886.1
FRYL FRY-like
chr4_-_48908707 -0.47 4.31 7.17E-02 chr4:48908707-48908834 - TSS,S
ENST00000273860.4/ENST00000381464.2/ENST00000510159.1/ENST00000514576.1/ENST00000506226.2
OCIAD2 OCIA domain containing 2
chr4_-_68566794 0.41 5.37 7.67E-02 chr4:68566794-68566955 - TSS,S
ENST00000322244.4/ENST00000420827.2/ENST00000429659.3/ENST00000506571.1
UBA6 ubiquitin-like modifier activating enzyme 6
chr4_-_74864383 1.71 0.59 8.15E-02 chr4:74864383-74864384 - TSSregion500,S ENST00000296027.4 CXCL5 chemokine (C-X-C motif) ligand 5
chr4_-_85887749 0.72 4.50 2.70E-03 chr4:85887749-85887912 - TSSregion500,S
ENST00000322366.6/ENST00000295888.4/ENST00000509172.1/ENST00000502713.1
WDFY3 WD repeat and FYVE domain containing 3
chr5_+_109025071 0.48 3.94 9.54E-02 chr5:109025071-109025143 + TSSregion500,S ENST00000261483.4 MAN2A1 mannosidase, alpha, class 2A, member 1
chr5_+_109257711 -1.96 0.53 9.72E-03 chr5:109257711-109257856 + intergenic intergenic NA NAchr5_+_115898212 -0.79 6.28 2.97E-03 chr5:115898212-115898282 + TSS,S ENST00000478778.1 CTB-118N6.1
chr5_+_139487359 0.89 2.77 2.41E-02 chr5:139487359-139487434 + TSS,S ENST00000505703.1 PURA purine-rich element binding protein A
chr5_+_142149936 0.53 6.76 1.87E-02 chr5:142149936-142150116 + TSS,S ENST00000378004.3/ENST00000274498.4 ARHGAP26 Rho GTPase activating
protein 26
chr5_+_142200886 2.81 0.99 2.00E-02 chr5:142200886-142200900 + CDS_or_noncoding_first_intron,S
ENST00000378004.3/ENST00000274498.4/ENST00000378013.2
ARHGAP26 Rho GTPase activating protein 26
chr5_+_142258855 1.59 0.52 9.56E-02 chr5:142258855-142259013 +CDS_or_noncoding_inner_exon,S
ENST00000378004.3/ENST00000274498.4/ENST00000378013.2/ENST00000475287.1
ARHGAP26 Rho GTPase activating protein 26
chr5_+_142443804 2.59 0.39 2.42E-02 chr5:142443804-142443983 +CDS_or_noncoding_inner_intron,S
ENST00000378004.3/ENST00000274498.4/ENST00000418668.3/ENST00000443674.1/ENST00000418236.1
ARHGAP26 Rho GTPase activating protein 26
chr5_+_145838658 1.18 1.84 5.00E-02 chr5:145838658-145838847 + TSS,S ENST00000513298.1 TCERG1 transcription elongation regulator 1
167167
Persson et al.
chr5_+_150460681 -0.98 2.90 5.97E-02 chr5:150460681-150460863 + TSSregion500,AS
ENST00000520931.1/ENST00000389378.2/ENST00000521591.1/ENST00000518977.1/ENST00000520695.1/ENST00000522926.1
TNIP1 TNFAIP3 interacting protein 1
chr5_+_151176790 1.51 0.66 7.91E-02 chr5:151176790-151176956 + 5UTR_inner_exon,S ENST00000543466.1 G3BP1
GTPase activating protein (SH3 domain) binding protein 1
chr5_+_159437537 1.33 1.30 2.56E-02 chr5:159437537-159437728 +CDS_or_noncoding_inner_exon,S
ENST00000231238.4/ENST00000522793.1 TTC1 tetratricopeptide repeat
domain 1
chr5_+_175665368 0.82 2.05 7.99E-02 chr5:175665368-175665494 + TSS,S
ENST00000430704.2/ENST00000443967.1/ENST00000429602.2/ENST00000495423.1/ENST00000508769.1
C5ORF25 NA
chr5_+_177027101 -0.77 3.74 2.52E-02 chr5:177027101-177027237 + TSS,S
ENST00000505433.1/ENST00000510761.1/ENST00000505468.1/ENST00000502420.1
B4GALT7xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7
chr5_+_55240433 -0.65 4.01 3.72E-02 chr5:55240433-55240451 +CDS_or_noncoding_first_intron,AS
ENST00000381286.3/ENST00000523039.1 IL6ST
interleukin 6 signal transducer (gp130, oncostatin M receptor)
chr5_+_60628054 0.66 5.47 2.62E-03 chr5:60628054-60628105 + TSS,S ENST00000252744.5 ZSWIM6 zinc finger, SWIM-type containing 6
chr5_+_72345896 1.70 0.64 8.12E-02 chr5:72345896-72345917 +CDS_or_noncoding_inner_intron,S
ENST00000341845.6/ENST00000430046.2/ENST00000512348.1
FCHO2 FCH domain only 2
chr5_+_74348454 -1.47 1.04 5.18E-02 chr5:74348454-74348582 + TSS,AS ENST00000503568.1 RP11-229C3.2
chr5_+_75699065 0.65 5.27 3.23E-02 chr5:75699065-75699177 + TSS,S ENST00000274364.6/ENST00000379730.3 IQGAP2
IQ motif containing GTPase activating protein 2
chr5_+_79703416 0.85 1.93 9.73E-02 chr5:79703416-79703439 + TSSregion500,S
ENST00000338008.5/ENST00000510158.1/ENST00000505560.1/ENST00000509562.1/ENST00000512558.1/ENST00000510995.1/ENST00000512442.1
ZFYVE16 zinc finger, FYVE domain containing 16
168168
Persson et al.
chr5_+_79703805 0.53 5.02 2.04E-02 chr5:79703805-79703925 + TSS,S
ENST00000338008.5/ENST00000510158.1/ENST00000505560.1/ENST00000509562.1/ENST00000512558.1/ENST00000510995.1
ZFYVE16 zinc finger, FYVE domain containing 16
chr5_+_82819235 2.17 1.03 2.52E-02 chr5:82819235-82819248 +CDS_or_noncoding_inner_intron,S
ENST00000265077.3/ENST00000343200.5/ENST00000342785.4/ENST00000512590.2/ENST00000502527.2
VCAN versican
chr5_+_85913712 -0.46 8.26 8.89E-02 chr5:85913712-85913905 + TSS,S
ENST00000247655.3/ENST00000509578.1/ENST00000515763.1/ENST00000511472.1/ENST00000505430.1/ENST00000513124.1
COX7C cytochrome c oxidase subunit VIIc
chr5_+_91562280 -0.75 8.65 1.40E-02 chr5:91562280-91562295 +CDS_or_noncoding_inner_intron,S
ENST00000502934.1/ENST00000507217.1
RP11-348J24.2
chr5_+_96271737 0.38 6.58 9.36E-02 chr5:96271737-96271841 + 5UTR_first_exon,S ENST00000231368.5 LNPEP leucyl/cystinyl
aminopeptidase
chr5_-_130970776 0.48 5.69 5.00E-02 chr5:130970776-130970953 - TSS,S
ENST00000509018.1/ENST00000307984.5/ENST00000507093.1/ENST00000296859.6/ENST00000358714.3/ENST00000515170.1/ENST00000510071.1
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6
chr5_-_18746175 1.08 2.80 9.72E-03 chr5:18746175-18746329 - TSS,S ENST00000512978.1 CTD-2023M8.1
chr5_-_36151923 0.45 4.10 8.99E-02 chr5:36151923-36152096 - TSS,S ENST00000296603.4/ENST00000546130.1 LMBRD2 LMBR1 domain
containing 2
chr5_-_53606233 0.45 6.21 5.55E-02 chr5:53606233-53606431 - TSS,S
ENST00000504924.1/ENST00000507646.1/ENST00000502271.1/ENST00000510591.1/ENST00000505630.1/ENST00000505383.1
ARL15 ADP-ribosylation factor-like 15
169169
Persson et al.
chr5_-_68665473 -1.70 0.44 5.47E-02 chr5:68665473-68665654 - TSSregion500,S
ENST00000380818.3/ENST00000328663.4/ENST00000380822.4/ENST00000512561.1/ENST00000217893.5/ENST00000503245.1/ENST00000509462.1/ENST00000512152.1/ENST00000508954.1/ENST00000502819.1
TAF9
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
chr5_-_77590406 0.53 6.11 5.08E-03 chr5:77590406-77590572 - TSS,SENST00000519295.1/ENST00000535760.1/ENST00000535667.1
AP3B1 adaptor-related protein complex 3, beta 1 subunit
chr5_-_93447217 0.62 5.69 9.50E-03 chr5:93447217-93447394 - TSS,SENST00000395965.3/ENST00000505869.1/ENST00000509163.1
FAM172A family with sequence similarity 172, member A
chr5_-_94417257 0.45 6.48 4.26E-02 chr5:94417257-94417377 - TSS,S
ENST00000429576.2/ENST00000508509.1/ENST00000512425.1/ENST00000505208.1/ENST00000510732.1/ENST00000513857.1
MCTP1 multiple C2 domains, transmembrane 1
chr6_+_107077424 0.43 4.34 8.20E-02 chr6:107077424-107077549 + TSS,SENST00000369046.4/ENST00000369044.1/ENST00000467262.1
QRSL1glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
chr6_+_108880957 -0.59 5.98 4.48E-02 chr6:108880957-108881031 + TSSregion500,S ENST00000343882.6 FOXO3 forkhead box O3
chr6_+_110012444 0.41 5.44 3.43E-02 chr6:110012444-110012546 + TSS,S ENST00000441478.2/ENST00000230124.3 FIG4
FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)
chr6_+_13289737 -1.63 1.38 6.33E-02 chr6:13289737-13289823 + intergenic intergenic NA NAchr6_+_138132668 -2.56 0.50 6.33E-02 chr6:138132668-138132803 + intergenic intergenic NA NA
chr6_+_138188328 -1.19 6.72 8.15E-02 chr6:138188328-138188507 + TSS,S ENST00000421450.1/ENST00000420009.1 TNFAIP3 tumor necrosis factor,
alpha-induced protein 3
chr6_+_144606062 0.69 3.30 4.80E-02 chr6:144606062-144606170 + upstream1000,S ENST00000433557.1 UTRN utrophin
chr6_+_144606710 1.04 3.83 7.06E-05 chr6:144606710-144606829 + TSSregion500,S ENST00000433557.1 UTRN utrophin
chr6_+_144665236 0.65 7.40 2.78E-03 chr6:144665236-144665413 + TSS,S ENST00000421035.1 UTRN utrophin
chr6_+_15249094 0.54 3.72 8.80E-02 chr6:15249094-15249175 + TSS,S ENST00000397311.3 JARID2 jumonji, AT rich interactive domain 2
chr6_+_154566797 -2.78 0.81 3.34E-02 chr6:154566797-154566904 + CDS_or_noncoding_last_intron,S ENST00000337049.4 OPRM1 opioid receptor, mu 1
170170
Persson et al.
chr6_+_16238702 -0.76 6.67 7.99E-02 chr6:16238702-16238902 + TSS,S ENST00000259727.4 GMPRguanosine monophosphate reductase
chr6_+_16295576 -1.75 1.00 7.99E-02 chr6:16295576-16295702 + CDS_or_noncoding_last_exon,S ENST00000544145.1 GMPR
guanosine monophosphate reductase
chr6_+_167370155 -0.66 4.00 8.98E-02 chr6:167370155-167370352 + TSS,AS ENST00000508775.1 RNASET2 ribonuclease T2
chr6_+_20534662 0.56 5.59 1.39E-02 chr6:20534662-20534813 + TSS,S ENST00000378624.4/ENST00000274695.4 CDKAL1
CDK5 regulatory subunit associated protein 1-like 1
chr6_+_26204717 -0.44 9.31 4.75E-02 chr6:26204717-26204861 + TSS,S ENST00000360441.4 HIST1H4E histone cluster 1, H4e
chr6_+_31601762 -1.14 1.96 1.50E-03 chr6:31601762-31601777 + TSSregion500,S ENST00000460302.1/ENST00000484787.1 PRRC2A proline-rich coiled-coil 2A
chr6_+_37897727 1.40 1.21 2.03E-02 chr6:37897727-37897896 + TSS,S ENST00000373389.5 ZFAND3 zinc finger, AN1-type domain 3
chr6_+_42908753 -1.35 0.78 6.33E-02 chr6:42908753-42908873 +CDS_or_noncoding_inner_intron,S
ENST00000450671.1 RP3-475N16.1
chr6_+_43603551 -0.53 3.48 7.99E-02 chr6:43603551-43603610 + TSS,S ENST00000372171.4/ENST00000508232.1 MAD2L1BP MAD2L1 binding protein
chr6_+_57182385 0.59 4.01 2.58E-02 chr6:57182385-57182529 + TSS,SENST00000389488.2/ENST00000274891.6/ENST00000419977.2
PRIM2 primase, DNA, polypeptide 2 (58kDa)
chr6_-_111045018 2.47 0.69 4.54E-03 chr6:111045018-111045064 - CDS_or_noncoding_first_intron,S
ENST00000463016.1/ENST00000460913.1 CDK19 cyclin-dependent kinase
19
chr6_-_116600964 -0.39 5.95 3.82E-02 chr6:116600964-116601122 - TSS,S ENST00000368608.3/ENST00000545830.1 TSPYL1 TSPY-like 1
chr6_-_118972658 0.49 4.29 6.72E-02 chr6:118972658-118972805 - TSSregion500,S ENST00000368491.3/ENST00000419517.2 C6ORF204 NA
chr6_-_130536675 0.72 6.29 1.18E-02 chr6:130536675-130536860 - TSS,S ENST00000532763.1 SAMD3 sterile alpha motif domain containing 3
chr6_-_137113491 0.44 5.30 7.17E-02 chr6:137113491-137113690 - TSS,S ENST00000359015.4/ENST00000367768.3 MAP3K5 mitogen-activated protein
kinase kinase kinase 5
chr6_-_14735049 -1.30 1.53 5.00E-02 chr6:14735049-14735184 - intergenic intergenic NA NA
chr6_-_152957914 0.74 4.49 1.69E-02 chr6:152957914-152958087 - TSS,S ENST00000423061.1/ENST00000367248.3 SYNE1
spectrin repeat containing, nuclear envelope 1
chr6_-_25452370 0.71 2.84 7.94E-02 chr6:25452370-25452519 -CDS_or_noncoding_last_exon,AS
ENST00000461945.1 LRRC16A leucine rich repeat containing 16A
171171
Persson et al.
chr6_-_33271952 -1.40 0.82 7.79E-02 chr6:33271952-33272002 -CDS_or_noncoding_inner_exon,S
ENST00000434618.2/ENST00000475304.1/ENST00000489157.1/ENST00000426633.2/ENST00000456592.2
TAPBP TAP binding protein (tapasin)
chr6_-_35026708 2.07 0.47 6.33E-02 chr6:35026708-35026834 -CDS_or_noncoding_first_intron,AS
ENST00000470698.1 ANKS1Aankyrin repeat and sterile alpha motif domain containing 1A
chr6_-_38607589 0.59 3.49 7.94E-02 chr6:38607589-38607760 - TSS,S ENST00000481247.1/ENST00000498633.1 BTBD9 BTB (POZ) domain
containing 9
chr6_-_84937306 0.85 2.66 6.27E-02 chr6:84937306-84937410 - TSS,S
ENST00000257766.4/ENST00000403245.3/ENST00000435955.1/ENST00000497936.1
KIAA1009 KIAA1009
chr6_-_89673243 0.48 4.93 1.54E-02 chr6:89673243-89673367 - TSS,S
ENST00000369485.4/ENST00000265607.6/ENST00000538899.1/ENST00000536746.1/ENST00000369475.3
RNGTT RNA guanylyltransferase and 5'-phosphatase
chr7_+_105172607 0.40 4.77 8.15E-02 chr7:105172607-105172776 + TSS,S
ENST00000467392.1/ENST00000482041.1/ENST00000493041.1/ENST00000497979.1
RINT1 RAD50 interactor 1
chr7_+_131012587 0.45 6.65 1.84E-02 chr7:131012587-131012732 + TSS,S
ENST00000446815.1/ENST00000352689.6/ENST00000388758.2/ENST00000458153.1/ENST00000494286.1/ENST00000494785.1
MKLN1muskelin 1, intracellular mediator containing kelch motifs
chr7_+_132720264 -1.76 0.63 8.17E-02 chr7:132720264-132720434 + 5UTR_inner_exon,AS ENST00000448615.2 MIR3654 microRNA 3654
chr7_+_132937757 0.46 6.07 2.58E-02 chr7:132937757-132937915 + TSS,S
ENST00000253861.4/ENST00000546185.1/ENST00000393161.2/ENST00000486013.1/ENST00000462055.1/ENST00000481074.1
EXOC4 exocyst complex component 4
chr7_+_139586200 1.34 1.96 4.24E-02 chr7:139586200-139586214 + CDS_or_noncoding_first_intron,S ENST00000462275.1 TBXAS1 thromboxane A synthase
1 (platelet)
chr7_+_150233616 -1.21 1.14 6.72E-02 chr7:150233616-150233622 + intergenic intergenic NA NA
172172
Persson et al.
chr7_+_28802360 2.16 0.75 1.39E-02 chr7:28802360-28802377 +CDS_or_noncoding_inner_intron,S
ENST00000396299.2/ENST00000357727.2/ENST00000396300.2/ENST00000409603.1/ENST00000426500.1/ENST00000396298.2
CREB5 cAMP responsive element binding protein 5
chr7_+_3018316 0.98 2.49 5.17E-02 chr7:3018316-3018483 + 5UTR_first_intron,AS ENST00000396946.4 CARD11
caspase recruitment domain family, member 11
chr7_+_37723315 0.71 5.40 1.32E-02 chr7:37723315-37723483 + TSS,S
ENST00000450180.1/ENST00000476620.1/ENST00000447769.1/ENST00000461610.1/ENST00000467202.1
GPR141 G protein-coupled receptor 141
chr7_+_55394173 -1.41 1.42 7.17E-02 chr7:55394173-55394182 + intergenic intergenic NA NA
chr7_+_76178627 0.78 3.50 1.64E-02 chr7:76178627-76178744 + TSS,SENST00000418663.1/ENST00000450661.1/ENST00000423084.1
AC004980.7
chr7_+_77166493 0.63 5.18 2.58E-02 chr7:77166493-77166664 + TSS,S ENST00000248594.6 PTPN12protein tyrosine phosphatase, non-receptor type 12
chr7_+_90225935 1.08 2.89 4.70E-03 chr7:90225935-90226005 + TSSregion500,S ENST00000380050.3 CDK14 cyclin-dependent kinase 14
chr7_+_90355563 1.81 0.60 5.85E-02 chr7:90355563-90355661 + TSSregion500,S ENST00000478540.1 CDK14 cyclin-dependent kinase 14
chr7_+_91570143 0.52 4.97 6.28E-02 chr7:91570143-91570321 + TSS,S
ENST00000356239.3/ENST00000394565.3/ENST00000413120.2/ENST00000358100.2/ENST00000359028.2/ENST00000394564.1/ENST00000493453.1
AKAP9 A kinase (PRKA) anchor protein (yotiao) 9
chr7_+_93551021 1.49 0.95 6.27E-02 chr7:93551021-93551028 + TSSregion500,S ENST00000248564.4 GNG11guanine nucleotide binding protein (G protein), gamma 11
chr7_+_98476491 0.87 2.73 7.28E-02 chr7:98476491-98476581 + 5UTR_first_intron,S
ENST00000359863.4/ENST00000355540.3 TRRAP
transformation/transcription domain-associated protein
chr7_-_111846396 1.11 4.56 6.50E-03 chr7:111846396-111846572 - TSS,SENST00000428084.1/ENST00000437633.1/ENST00000476846.1
DOCK4 dedicator of cytokinesis 4
chr7_-_127634546 1.99 0.42 7.03E-02 chr7:127634546-127634607 -CDS_or_noncoding_inner_intron,AS
ENST00000354725.3/ENST00000438400.2/ENST00000486037.1/ENST00000470723.1
SND1staphylococcal nuclease and tudor domain containing 1
173173
Persson et al.
chr7_-_128049944 -0.42 6.23 6.89E-02 chr7:128049944-128050068 - TSS,S
ENST00000419067.2/ENST00000354269.5/ENST00000378717.4/ENST00000343214.4/ENST00000348127.6/ENST00000497868.1/ENST00000489263.1/ENST00000473463.1/ENST00000491376.1
IMPDH1IMP (inosine 5'-monophosphate) dehydrogenase 1
chr7_-_130792748 0.51 5.78 5.75E-02 chr7:130792748-130792910 - TSS,S ENST00000423414.1/ENST00000429901.1 AC058791.2
chr7_-_17980042 0.36 5.84 7.91E-02 chr7:17980042-17980146 - TSS,S
ENST00000409389.1/ENST00000428135.2/ENST00000409076.2/ENST00000242044.12/ENST00000444712.1/ENST00000409604.1/ENST00000482558.1/ENST00000474067.1/ENST00000475800.1/ENST00000471744.1
SNX13 sorting nexin 13
chr7_-_25019697 0.57 4.38 7.99E-02 chr7:25019697-25019884 - TSS,S
ENST00000313367.2/ENST00000431825.2/ENST00000352860.1/ENST00000353930.1
OSBPL3 oxysterol binding protein-like 3
chr7_-_28220323 -0.82 2.81 9.36E-02 chr7:28220323-28220324 - TSSregion500,SENST00000283928.5/ENST00000452993.1/ENST00000454041.1
JAZF1 JAZF zinc finger 1
chr7_-_2883845 -0.69 4.70 4.26E-02 chr7:2883845-2884045 - TSS,S ENST00000275364.3 GNA12guanine nucleotide binding protein (G protein) alpha 12
chr7_-_36763798 0.86 4.53 2.91E-02 chr7:36763798-36763855 - TSSregion500,S
ENST00000535891.1/ENST00000258749.5/ENST00000431169.1/ENST00000544647.1/ENST00000435386.1/ENST00000414637.1
AOAH acyloxyacyl hydrolase (neutrophil)
chr7_-_37488415 0.45 6.50 3.57E-02 chr7:37488415-37488586 - TSS,SENST00000453399.1/ENST00000463390.1/ENST00000479447.1
ELMO1 engulfment and cell motility 1
chr7_-_76751580 0.88 2.10 9.91E-02 chr7:76751580-76751665 - TSSregion500,S ENST00000443595.1 FAM185BPfamily with sequence similarity 185, member B pseudogene
174174
Persson et al.
chr7_-_91875170 0.67 3.55 5.00E-02 chr7:91875170-91875265 - TSS,S
ENST00000394505.2/ENST00000394503.2/ENST00000433016.1/ENST00000454017.1/ENST00000440209.1/ENST00000430102.1/ENST00000413688.1/ENST00000458493.1/ENST00000452773.1/ENST00000425919.1/ENST00000422347.1/ENST00000425073.1/ENST00000466166.1/ENST00000489087.1
KRIT1 KRIT1, ankyrin repeat containing
chr8_+_100025274 0.86 5.16 7.06E-05 chr8:100025274-100025332 + TSSregion500,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_100025481 0.60 4.82 7.42E-02 chr8:100025481-100025543 + TSS,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_100108531 2.80 0.79 7.31E-05 chr8:100108531-100108654 +CDS_or_noncoding_inner_exon,S
ENST00000395996.1/ENST00000357162.2/ENST00000358544.2/ENST00000355155.1/ENST00000496144.1/ENST00000441350.2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_100287325 2.17 0.53 8.80E-02 chr8:100287325-100287470 + TSS,S ENST00000522802.1 VPS13B vacuolar protein sorting 13 homolog B (yeast)
chr8_+_119294354 1.30 1.70 8.81E-02 chr8:119294354-119294548 + TSS,S ENST00000366457.2/ENST00000449065.1 AC023590.1 Uncharacterized protein
175175
Persson et al.
chr8_+_124084855 0.77 3.78 2.58E-02 chr8:124084855-124085018 + TSS,S
ENST00000287380.1/ENST00000309336.3/ENST00000327098.5/ENST00000522420.1/ENST00000521676.1/ENST00000378080.2/ENST00000524307.1/ENST00000543408.1/ENST00000519418.1/ENST00000518099.1
WDR67 WD repeat domain 67
chr8_+_128807989 1.39 1.30 7.28E-02 chr8:128807989-128808103 + TSS,SENST00000517790.1/ENST00000522963.1/ENST00000518528.1
PVT1 Pvt1 oncogene (non-protein coding)
chr8_+_142726317 -1.45 0.84 6.08E-02 chr8:142726317-142726327 + intergenic intergenic NA NA
chr8_+_145743322 -0.76 2.34 7.77E-02 chr8:145743322-145743510 + TSS,SENST00000527730.1/ENST00000529022.1/ENST00000292524.1
LRRC14 leucine rich repeat containing 14
chr8_+_23424071 -0.87 4.03 4.76E-02 chr8:23424071-23424155 + TSSregion500,S ENST00000522164.1/ENST00000521637.1 SLC25A37
solute carrier family 25 (mitochondrial iron transporter), member 37
chr8_+_23424508 -1.01 5.10 5.44E-02 chr8:23424508-23424604 +CDS_or_noncoding_inner_exon,S
ENST00000518881.1/ENST00000523883.1 SLC25A37
solute carrier family 25 (mitochondrial iron transporter), member 37
chr8_+_23430115 -1.85 0.49 1.74E-02 chr8:23430115-23430150 + TSSregion500,S ENST00000399967.3 AC051642.1
chr8_+_26149005 0.47 5.52 6.33E-02 chr8:26149005-26149147 + TSS,S
ENST00000380737.3/ENST00000520329.1/ENST00000524169.1/ENST00000518397.1/ENST00000518254.1
PPP2R2Aprotein phosphatase 2, regulatory subunit B, alpha
chr8_+_28747868 0.59 4.86 1.29E-02 chr8:28747868-28747935 + TSS,S
ENST00000403668.2/ENST00000444075.1/ENST00000287701.10/ENST00000558662.1/ENST00000523613.1/ENST00000560599.1/ENST00000397358.3/ENST00000519662.1/ENST00000560357.1
HMBOX1 homeobox containing 1
176176
Persson et al.
chr8_+_29952895 -0.36 7.21 6.33E-02 chr8:29952895-29953042 + TSS,S
ENST00000520739.1/ENST00000321250.8/ENST00000518001.1/ENST00000520682.1/ENST00000442880.2/ENST00000523116.1
LEPROTL1leptin receptor overlapping transcript-like 1
chr8_+_48651019 -1.71 0.54 4.26E-02 chr8:48651019-48651125 + TSSregion500,AS ENST00000542385.1 CEBPD CCAAT/enhancer binding
protein (C/EBP), delta
chr8_+_60568363 1.54 1.73 7.91E-02 chr8:60568363-60568548 + intergenic intergenic NA NAchr8_+_7380136 -1.26 2.19 3.55E-02 chr8:7380136-7380152 + intergenic intergenic NA NA
chr8_+_86132710 1.01 2.15 1.92E-02 chr8:86132710-86132860 + TSS,S ENST00000517831.1/ENST00000517298.1 CA13 carbonic anhydrase XIII
chr8_+_8777573 1.02 2.90 6.38E-03 chr8:8777573-8777660 + intergenic intergenic NA NA
chr8_+_92082426 0.49 4.66 8.06E-02 chr8:92082426-92082622 + TSS,SENST00000522894.1/ENST00000404789.3/ENST00000524027.1
OTUD6B OTU domain containing 6B
chr8_+_97657450 0.36 6.31 6.60E-02 chr8:97657450-97657618 + TSS,SENST00000220763.5/ENST00000519900.1/ENST00000517742.1
PGCP NA
chr8_-_123683573 0.82 4.76 5.27E-02 chr8:123683573-123683766 - 5UTR_inner_intron,S ENST00000521608.1 RP11-
973F15.1
chr8_-_145016749 -0.77 2.66 9.87E-02 chr8:145016749-145016858 - TSSregion500,S ENST00000357649.2 PLEC plectin
chr8_-_41788305 -1.61 0.76 7.28E-02 chr8:41788305-41788462 - 3UTR_last_exon,S
ENST00000265713.2/ENST00000396930.3/ENST00000406337.1
KAT6A K(lysine) acetyltransferase 6A
chr8_-_642509 1.42 0.70 7.10E-02 chr8:642509-642642 -CDS_or_noncoding_inner_exon,S
ENST00000543819.1/ENST00000262109.7/ENST00000524138.1/ENST00000518277.1
ERICH1 glutamate-rich 1
chr8_-_67525448 1.01 3.55 1.54E-02 chr8:67525448-67525541 - TSS,S ENST00000522677.2/ENST00000517885.1 MYBL1
v-myb myeloblastosis viral oncogene homolog (avian)-like 1
chr8_-_71316022 0.69 2.84 4.19E-02 chr8:71316022-71316077 - TSS,S ENST00000452400.2 NCOA2 nuclear receptor coactivator 2
chr8_-_99057735 -0.71 9.85 8.80E-02 chr8:99057735-99057818 - TSS,S
ENST00000521291.1/ENST00000396070.2/ENST00000518850.1/ENST00000287038.3/ENST00000523172.1/ENST00000518164.1/ENST00000517489.1/ENST00000520998.1/ENST00000521112.1
RPL30 ribosomal protein L30
177177
Persson et al.
chr9_+_109075381 1.66 2.40 2.44E-02 chr9:109075381-109075504 +CDS_or_noncoding_inner_intron,S
ENST00000435485.1 RP11-308N19.1
chr9_+_111389046 -0.60 6.31 2.34E-02 chr9:111389046-111389163 + TSS,S ENST00000306634.3 RP11-220D10.1
chr9_+_117148163 1.33 0.85 9.33E-02 chr9:117148163-117148178 + 5UTR_first_intron,AS
ENST00000307564.4/ENST00000374088.3/ENST00000312033.3/ENST00000394574.2
AKNA AT-hook transcription factor
chr9_+_127420623 1.34 2.60 2.58E-02 chr9:127420623-127420808 + TSS,S ENST00000429139.1 MIR181A2HG MIR181A2 host gene (non-protein coding)
chr9_+_15422802 0.68 5.06 1.52E-02 chr9:15422802-15422941 + TSS,SENST00000490969.1/ENST00000447670.2/ENST00000421710.1
SNAPC3small nuclear RNA activating complex, polypeptide 3, 50kDa
chr9_+_17134982 0.92 2.84 4.15E-02 chr9:17134982-17135181 + TSS,SENST00000262360.5/ENST00000425824.1/ENST00000380641.3
CNTLN centlein, centrosomal protein
chr9_+_33993703 -1.14 1.08 8.79E-02 chr9:33993703-33993710 + 5UTR_inner_intron,AS ENST00000379239.4 UBAP2 ubiquitin associated
protein 2
chr9_+_4984839 0.93 1.62 9.33E-02 chr9:4984839-4984870 + TSSregion500,SENST00000539801.1/ENST00000381652.3/ENST00000476574.1
JAK2 Janus kinase 2
chr9_+_5079501 2.32 0.56 3.08E-02 chr9:5079501-5079517 +CDS_or_noncoding_inner_intron,S
ENST00000539801.1/ENST00000381652.3/ENST00000544510.1
JAK2 Janus kinase 2
chr9_+_6757938 0.48 5.41 5.60E-02 chr9:6757938-6758119 + TSS,SENST00000442236.2/ENST00000536108.1/ENST00000489243.1
KDM4C lysine (K)-specific demethylase 4C
chr9_+_82846961 0.88 2.30 6.85E-02 chr9:82846961-82847092 + intergenic intergenic NA NAchr9_+_92142178 1.50 1.18 3.47E-02 chr9:92142178-92142376 + intergenic intergenic NA NA
chr9_-_107690334 0.58 5.08 8.08E-02 chr9:107690334-107690529 - TSS,SENST00000374736.3/ENST00000423487.2/ENST00000374733.1
ABCA1ATP-binding cassette, sub-family A (ABC1), member 1
chr9_-_117135368 -1.66 1.04 6.33E-02 chr9:117135368-117135472 - 5UTR_inner_intron,S ENST00000223791.3 AKNA AT-hook transcription
factor
chr9_-_127624192 -0.36 9.02 7.06E-02 chr9:127624192-127624274 - TSS,S
ENST00000493018.1/ENST00000348462.3/ENST00000487431.1/ENST00000495728.1
RPL35 ribosomal protein L35
chr9_-_27573654 1.02 2.36 8.97E-02 chr9:27573654-27573803 - TSS,S ENST00000379995.1 C9ORF72 NA
chr9_-_35103092 -0.51 4.74 7.94E-02 chr9:35103092-35103195 - TSS,S ENST00000356493.5/ENST00000452248.2 STOML2 stomatin (EPB72)-like 2
chr9_-_80468615 1.88 0.49 7.06E-02 chr9:80468615-80468695 -CDS_or_noncoding_inner_intron,S
ENST00000286548.4/ENST00000411677.1 GNAQ
guanine nucleotide binding protein (G protein), q polypeptide
178178
Persson et al.
chr9_-_80646818 0.55 4.35 4.48E-02 chr9:80646818-80646920 - TSSregion500,S ENST00000286548.4 GNAQguanine nucleotide binding protein (G protein), q polypeptide
chr9_-_94173418 -1.28 2.36 3.15E-02 chr9:94173418-94173492 - 5UTR_first_intron,S
ENST00000375724.1/ENST00000297689.2 NFIL3 nuclear factor, interleukin
3 regulatedchr9_-_99616742 0.68 2.92 9.87E-02 chr9:99616742-99616832 - TSS,S ENST00000481138.1 ZNF782 zinc finger protein 782chrM_+_11848 -0.91 6.34 1.67E-02 chrM:11848-11913 + intergenic intergenic NA NAchrM_+_13003 -1.83 0.99 2.52E-02 chrM:13003-13004 + intergenic intergenic NA NAchrM_+_13053 -0.92 4.02 6.33E-02 chrM:13053-13056 + intergenic intergenic NA NAchrM_+_2701 -0.93 5.35 7.06E-02 chrM:2701-2704 + intergenic intergenic NA NAchrM_+_3642 -0.82 3.40 6.71E-02 chrM:3642-3644 + intergenic intergenic NA NAchrM_+_8635 -0.57 5.99 9.36E-02 chrM:8635-8670 + intergenic intergenic NA NAchrX_+_106917504 -1.17 1.76 6.34E-02 chrX:106917504-106917612 + intergenic intergenic NA NA
chrX_+_117629589 0.40 6.18 7.67E-02 chrX:117629589-117629665 + TSSregion500,S ENST00000276204.6/ENST00000276202.7 DOCK11 dedicator of cytokinesis
11
chrX_+_1387667 6.79 4.26 3.16E-02 chrX:1387667-1387812 + TSS,S
ENST00000381529.3/ENST00000501036.2/ENST00000432318.2/ENST00000361536.3/ENST00000381507.4/ENST00000381524.3/ENST00000412290.1/ENST00000419094.1/ENST00000381509.3/ENST00000486791.1/ENST00000355432.3/ENST00000355805.2/ENST00000493312.1/ENST00000494969.1/ENST00000481245.1
CSF2RA
colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
chrX_+_155110927 6.81 4.40 2.75E-02 chrX:155110927-155111078 + TSS,S
ENST00000286448.6/ENST00000488344.1/ENST00000262640.6/ENST00000460621.1/ENST00000479687.1/ENST00000463317.1
VAMP7 vesicle-associated membrane protein 7
chrX_+_1710456 6.40 3.69 7.97E-02 chrX:1710456-1710612 + TSS,SENST00000313871.3/ENST00000474361.1/ENST00000381261.3
AKAP17A A kinase (PRKA) anchor protein 17A
chrX_+_2527283 5.69 2.68 9.26E-02 chrX:2527283-2527483 + TSS,S
ENST00000431582.1/ENST00000435581.2/ENST00000430562.1/ENST00000527459.1
CD99P1 CD99 molecule pseudogene 1
179179
Persson et al.
chrX_+_2609209 8.52 6.65 6.64E-03 chrX:2609209-2609401 + TSS,SENST00000381192.3/ENST00000381187.3/ENST00000381184.1
CD99 CD99 molecule
chrX_+_48814922 -1.04 1.62 9.41E-02 chrX:48814922-48814975 + TSSregion500,AS
ENST00000453548.1/ENST00000396743.3/ENST00000455452.1/ENST00000156084.4/ENST00000376488.3
OTUD5 OTU domain containing 5
chrX_+_77166100 0.40 5.62 7.42E-02 chrX:77166100-77166283 + TSS,S
ENST00000343912.6/ENST00000343533.5/ENST00000350425.4/ENST00000341514.6/ENST00000400860.5
ATP7AATPase, Cu++ transporting, alpha polypeptide
chrX_+_95939745 0.62 4.48 6.13E-02 chrX:95939745-95939863 + TSSregion500,S
ENST00000355827.4/ENST00000373054.4/ENST00000373061.3/ENST00000373049.4/ENST00000324765.8/ENST00000537885.1
DIAPH2 diaphanous homolog 2 (Drosophila)
chrX_-_106960136 -0.67 9.16 7.28E-02 chrX:106960136-106960300 - TSS,S ENST00000503515.1 TSC22D3 TSC22 domain family, member 3
chrX_-_1510944 9.08 7.01 5.08E-03 chrX:1510944-1511062 - TSS,S ENST00000475167.1/ENST00000484026.1 SLC25A6
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6
chrX_-_153979267 0.52 4.42 5.75E-02 chrX:153979267-153979372 - TSS,SENST00000369575.3/ENST00000369568.4/ENST00000424127.2
GAB3 GRB2-associated binding protein 3
chrX_-_1655991 7.44 5.19 1.16E-02 chrX:1655991-1656187 - TSS,S ENST00000381297.4 P2RY8 purinergic receptor P2Y, G-protein coupled, 8
chrX_-_53246951 1.45 1.24 6.72E-02 chrX:53246951-53247141 -CDS_or_noncoding_inner_exon,S
ENST00000452825.3/ENST00000375401.3/ENST00000404049.3/ENST00000375379.3/ENST00000375383.3
KDM5C lysine (K)-specific demethylase 5C
chrX_-_73511850 0.93 1.96 9.37E-02 chrX:73511850-73511920 - TSS,S ENST00000455395.1 FTXFTX transcript, XIST regulator (non-protein coding)
180180
244
Persson et al.
Table E8. Differentially expressed tag clusters for SA vs CA (glm analysis adjusted for neutrophil, eosinophil and lymphocyte counts as fractions of total leukocyte counts).
TC logFC logCPM Adj. P Position Strand Annotation Transcript iD Gene symbol Description
chr10_-_22292557 0.53 4.86 9.22E-02 chr10:22292557-22292701 - TSS,S ENST00000376980.3/ENST00000376946.1 DNAJC1 DnaJ (Hsp40) homolog,
subfamily C, member 1
chr10_-_98346682 0.41 5.99 9.60E-02 chr10:98346682-98346826 - TSS,S ENST00000371142.4 TM9SF3 transmembrane 9 superfamily member 3
chr11_+_58385890 -1.60 1.18 9.60E-02 chr11:58385890-58386064 + 3UTR_last_exon,S ENST00000316059.6 ZFP91 zinc finger protein 91
homolog (mouse)
chr11_+_65200038 1.95 1.00 4.44E-02 chr11:65200038-65200082 + CDS_or_noncoding_first_exon,S ENST00000501122.2 NEAT1
nuclear paraspeckle assembly transcript 1 (non-protein coding)
chr11_+_75526208 0.47 5.66 9.60E-02 chr11:75526208-75526325 + TSS,S ENST00000356136.3 UVRAG UV radiation resistance associated
chr11_-_10315600 0.59 5.82 4.15E-02 chr11:10315600-10315799 - TSS,S ENST00000256190.8 SBF2 SET binding factor 2
chr11_-_107328431 0.46 5.93 9.60E-02 chr11:107328431-107328604 - TSS,S ENST00000282251.5/
ENST00000433523.1 CWF19L2 CWF19-like 2, cell cycle control (S. pombe)
chr11_-_5248509 -1.63 0.87 9.60E-02 chr11:5248509-5248514 - TSSregion500,SENST00000335295.3/ENST00000475226.1/ENST00000485743.1
HBB hemoglobin, beta
chr11_-_77531732 0.70 3.41 4.15E-02 chr11:77531732-77531738 - TSSregion500,S ENST00000467567.1/ENST00000530604.1 RSF1 remodeling and spacing
factor 1
chr11_-_85779796 1.42 1.77 9.22E-02 chr11:85779796-85779902 - TSS,S ENST00000356360.5/ENST00000534412.1 PICALM phosphatidylinositol binding
clathrin assembly protein
chr12_+_119442508 -1.44 1.64 7.71E-02 chr12:119442508-
119442521 +CDS_or_noncoding_first_intron,S
ENST00000267260.4 SRRM4 serine/arginine repetitive matrix 4
181181
245246247
Persson et al.
chr12_+_14518558 0.42 5.99 9.60E-02 chr12:14518558-14518670 + TSS,S
ENST00000261168.4/ENST00000538511.1/ENST00000545723.1/ENST00000543189.1/ENST00000536444.1/ENST00000539659.1/ENST00000537653.1
ATF7IP activating transcription factor 7 interacting protein
chr12_+_4410650 -1.16 1.76 4.15E-02 chr12:4410650-4410657 + 3UTR_last_exon,S ENST00000261254.3 CCND2 cyclin D2
chr12_+_51019750 1.45 1.25 9.60E-02 chr12:51019750-51019809 +CDS_or_noncoding_inner_exon,S
ENST00000455310.1/ENST00000301180.5/ENST00000549620.1
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila)
chr12_+_57522404 0.93 3.03 9.60E-02 chr12:57522404-57522455 + TSSregion500,S
ENST00000553277.1/ENST00000243077.3/ENST00000338962.4/ENST00000554174.1
LRP1 low density lipoprotein receptor-related protein 1
chr12_+_66582922 0.60 5.50 8.81E-02 chr12:66582922-66583121 + TSS,S ENST00000545837.1/ENST00000457197.2 IRAK3 interleukin-1 receptor-
associated kinase 3
chr12_-_109895984 1.16 1.78 9.60E-02 chr12:109895984-109896117 - TSSregion500,S ENST00000540402.1 KCTD10
potassium channel tetramerisation domain containing 10
chr12_-_57107359 0.98 2.71 8.81E-02 chr12:57107359-57107477 - TSS,S ENST00000548386.1 NACAnascent polypeptide-associated complex alpha subunit
chr12_-_72057520 0.54 5.69 8.61E-02 chr12:72057520-72057681 - TSS,SENST00000552994.1/ENST00000548100.1/ENST00000552037.1
ZFC3H1 zinc finger, C3H1-type containing
chr14_+_56764830 -1.55 1.44 9.60E-02 chr14:56764830-56764842 + 3UTR_last_exon,S ENST00000267460.4 PELI2 pellino E3 ubiquitin protein
ligase family member 2
chr14_+_66974662 1.27 1.33 3.70E-02 chr14:66974662-66974727 + TSSregion500,S
ENST00000459628.1/ENST00000543237.1/ENST00000555668.1/ENST00000556633.1
GPHN gephyrin
182182
Persson et al.
chr14_+_68286453 0.68 2.78 9.60E-02 chr14:68286453-68286561 + TSS,S
ENST00000479335.1/ENST00000487861.1/ENST00000471583.1/ENST00000487270.1/ENST00000488612.1
RAD51B RAD51 homolog B (S. cerevisiae)
chr14_+_72054563 1.50 0.75 9.22E-02 chr14:72054563-72054727 + 5UTR_inner_exon,S
ENST00000381232.3/ENST00000555818.1/ENST00000358550.2
SIPA1L1 signal-induced proliferation-associated 1 like 1
chr14_-_81408018 0.85 2.70 9.60E-02 chr14:81408018-81408145 - TSS,S
ENST00000555265.1/ENST00000216517.6/ENST00000557411.1/ENST00000554298.1
CEP128 centrosomal protein 128kDa
chr15_+_22550633 1.48 2.26 9.60E-02 chr15:22550633-22550814 + intergenic intergenic NA NA
chr15_+_31664212 1.68 2.36 7.71E-02 chr15:31664212-31664310 + 5UTR_last_exon,S ENST00000558844.1 KLF13 Kruppel-like factor 13
chr15_+_78462578 -1.05 2.44 7.71E-02 chr15:78462578-78462718 + CDS_or_noncoding_last_exon,S ENST00000558535.1 IDH3A isocitrate dehydrogenase 3
(NAD+) alpha
chr15_+_86087291 0.70 4.98 4.15E-02 chr15:86087291-86087325 + 5UTR_inner_intron,S ENST00000426424.2 AKAP13 A kinase (PRKA) anchor
protein 13
chr16_+_22448315 0.98 3.86 3.32E-04 chr16:22448315-22448383 + TSS,S ENST00000446662.1 RP11-368J21.1 NA
chr16_+_23847533 0.97 3.63 9.60E-02 chr16:23847533-23847598 + TSSregion500,S ENST00000498058.1 PRKCB protein kinase C, beta
chr16_+_30486826 1.42 1.21 7.71E-02 chr16:30486826-30486865 +CDS_or_noncoding_inner_exon,S
ENST00000356798.4/ENST00000358164.4/ENST00000454514.2
ITGAL
integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)
chr16_+_75611235 -1.55 1.68 7.71E-02 chr16:75611235-75611426 + CDS_or_noncoding_last_exon,S ENST00000037243.2 GABARAPL2 GABA(A) receptor-associated
protein-like 2
chr17_+_27467469 1.07 1.78 5.85E-02 chr17:27467469-27467548 + TSSregion500,AS
ENST00000540575.1/ENST00000529799.1/ENST00000528564.1/ENST00000528322.1/ENST00000529651.1
MYO18A myosin XVIIIA
chr17_+_27872845 -2.38 0.50 7.71E-02 chr17:27872845-27873038 + intergenic intergenic NA NA
183183
Persson et al.
chr17_+_5284794 -1.20 1.96 7.71E-02 chr17:5284794-5284861 +CDS_or_noncoding_inner_exon,S
ENST00000408982.2/ENST00000262477.6/ENST00000537505.1/ENST00000546142.1/ENST00000341923.5
RABEP1 rabaptin, RAB GTPase binding effector protein 1
chr17_-_49198086 0.45 5.75 9.60E-02 chr17:49198086-49198263 - TSS,S
ENST00000262013.7/ENST00000505279.1/ENST00000357122.4/ENST00000546269.1
SPAG9 sperm associated antigen 9
chr18_+_13217609 1.20 1.70 9.22E-02 chr18:13217609-13217753 + intergenic intergenic NA NA
chr18_+_2655680 0.43 8.22 9.60E-02 chr18:2655680-2655741 + TSSregion500,S ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2655873 0.44 5.75 9.60E-02 chr18:2655873-2655931 + TSS,S ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2656007 1.60 1.83 7.71E-02 chr18:2656007-2656050 + TSSregion500,S ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_2673977 1.08 2.39 4.15E-02 chr18:2673977-2674175 +CDS_or_noncoding_inner_exon,S
ENST00000261598.8/ENST00000320876.5 SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
chr18_+_3253225 1.01 4.52 7.90E-02 chr18:3253225-3253251 + 5UTR_inner_exon,S
ENST00000217652.3/ENST00000536605.1 MYL12A myosin, light chain 12A,
regulatory, non-sarcomeric
chr18_+_59854480 0.46 6.42 7.71E-02 chr18:59854480-59854597 + TSS,S ENST00000398130.2/ENST00000256858.5 KIAA1468 KIAA1468
chr19_+_3577295 1.80 1.54 3.70E-02 chr19:3577295-3577415 +CDS_or_noncoding_inner_intron,S
ENST00000333651.6/ENST00000402569.2/ENST00000488973.1/ENST00000487894.1
HMG20B high mobility group 20B
184184
Persson et al.
chr19_+_41812977 -1.60 2.06 7.71E-02 chr19:41812977-41813005 + 3UTR_last_exon,S
ENST00000352456.2/ENST00000392006.2/ENST00000378215.3
HNRNPUL1 heterogeneous nuclear ribonucleoprotein U-like 1
chr19_+_42411506 -1.83 0.84 7.71E-02 chr19:42411506-42411574 + CDS_or_noncoding_last_exon,S ENST00000378152.3 ARHGEF1 Rho guanine nucleotide
exchange factor (GEF) 1
chr1_+_100818005 0.55 6.01 9.22E-02 chr1:100818005-100818136 + TSS,SENST00000370125.2/ENST00000361544.6/ENST00000370124.3
CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae)
chr1_+_110168930 2.24 0.61 8.81E-02 chr1:110168930-110169018 + TSSregion500,S ENST00000534144.1 AMPD2 adenosine monophosphate deaminase 2
chr1_+_171558464 1.32 1.37 4.15E-02 chr1:171558464-171558473 +CDS_or_noncoding_inner_intron,S
ENST00000392078.3/ENST00000451306.2/ENST00000392080.3/ENST00000498596.1
PRRC2C proline-rich coiled-coil 2C
chr1_+_231762403 0.81 3.55 2.67E-02 chr1:231762403-231762591 + TSS,S
ENST00000535944.1/ENST00000539444.1/ENST00000295051.7/ENST00000366633.3/ENST00000366636.4/ENST00000535983.1/ENST00000537876.1/ENST00000366637.3/ENST00000366638.5/ENST00000532576.2/ENST00000439617.2/ENST00000317586.4
DISC1 disrupted in schizophrenia 1
chr1_+_36396682 0.50 4.53 9.22E-02 chr1:36396682-36396870 + TSS,S ENST00000397828.2/ENST00000246314.6 EIF2C3 eukaryotic translation
initiation factor 2C, 3
chr1_+_37070847 -1.29 1.40 9.60E-02 chr1:37070847-37070859 + intergenic intergenic NA NA
chr1_+_40840055 1.49 1.96 4.44E-02 chr1:40840055-40840132 + TSSregion500,S ENST00000372708.1 SMAP2 small ArfGAP2
chr1_-_160654751 1.41 1.86 9.60E-02 chr1:160654751-160654816 -CDS_or_noncoding_inner_exon,S
ENST00000368046.3 CD48 CD48 molecule
chr1_-_98386462 0.41 7.99 7.71E-02 chr1:98386462-98386637 - TSS,S
ENST00000370192.3/ENST00000423006.2/ENST00000306031.5/ENST00000460019.1
DPYD dihydropyrimidine dehydrogenase
185185
Persson et al.
chr20_+_50419024 -1.85 0.93 8.81E-02 chr20:50419024-50419033 + TSSregion500,AS
ENST00000217086.3/ENST00000371539.3/ENST00000395997.3
SALL4 sal-like 4 (Drosophila)
chr20_+_57226693 1.08 2.05 9.60E-02 chr20:57226693-57226892 + TSS,S ENST00000496003.1 STX16 syntaxin 16
chr20_-_1350022 -1.87 0.78 9.60E-02 chr20:1350022-1350071 - 3UTR_last_exon,S ENST00000400137.4 FKBP1A FK506 binding protein 1A,
12kDa
chr20_-_20693126 0.46 5.00 9.22E-02 chr20:20693126-20693326 - TSS,SENST00000202677.6/ENST00000424490.1/ENST00000438161.1
RALGAPA2Ral GTPase activating protein, alpha subunit 2 (catalytic)
chr20_-_35519412 -1.83 0.73 6.16E-02 chr20:35519412-35519538 - 3UTR_last_exon,S ENST00000262878.4 SAMHD1 SAM domain and HD domain
1
chr21_+_17102256 0.71 5.16 3.53E-03 chr21:17102256-17102425 + TSS,SENST00000285679.6/ENST00000351097.5/ENST00000285681.2
USP25 ubiquitin specific peptidase 25
chr21_+_38445497 0.46 5.15 9.33E-02 chr21:38445497-38445694 + TSS,S
ENST00000418766.1/ENST00000438055.1/ENST00000355666.1/ENST00000450533.1/ENST00000540756.1/ENST00000399010.1/ENST00000485402.1/ENST00000492275.1/ENST00000463216.1/ENST00000481605.1/ENST00000494243.1
TTC3 tetratricopeptide repeat domain 3
chr22_+_20100542 -1.55 1.54 9.33E-02 chr22:20100542-20100552 + TSSregion500,AS ENST00000480339.1 TRMT2A tRNA methyltransferase 2
homolog A (S. cerevisiae)
chr22_+_39354384 -1.48 1.51 9.24E-02 chr22:39354384-39354441 +CDS_or_noncoding_first_intron,S
ENST00000249116.2 APOBEC3Aapolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
chr22_+_41488564 0.59 4.98 7.90E-02 chr22:41488564-41488632 + 5UTR_first_exon,S ENST00000263253.7 EP300 E1A binding protein p300
186186
Persson et al.
chr2_+_102314123 0.56 6.69 4.44E-02 chr2:102314123-102314207 + TSS,S ENST00000425019.1 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4
chr2_+_109403102 0.77 2.39 9.60E-02 chr2:109403102-109403287 + TSS,S
ENST00000412964.2/ENST00000409529.2/ENST00000295124.4/ENST00000447782.1/ENST00000470608.1
CCDC138 coiled-coil domain containing 138
chr2_+_134877463 0.52 4.86 7.71E-02 chr2:134877463-134877533 + TSSregion500,SENST00000409645.1/ENST00000481801.1/ENST00000468758.1
MGAT5
mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase
chr2_+_192700471 -2.54 0.71 7.71E-02 chr2:192700471-192700611 + 3UTR_last_exon,AS ENST00000304141.4 SDPR serum deprivation response
chr2_+_209130906 0.48 6.33 7.71E-02 chr2:209130906-209131086 + TSS,S
ENST00000264380.4/ENST00000392200.1/ENST00000392202.3/ENST00000443896.1/ENST00000308862.6/ENST00000407449.1/ENST00000422495.1
PIKFYVE phosphoinositide kinase, FYVE finger containing
chr2_+_210867290 0.66 4.28 9.60E-02 chr2:210867290-210867367 + TSS,S
ENST00000436630.2/ENST00000408981.2/ENST00000454822.1/ENST00000429921.1/ENST00000453724.1/ENST00000540255.1/ENST00000438265.1/ENST00000429907.1/ENST00000441588.1/ENST00000445268.1/ENST00000452025.1/ENST00000438204.1
RPE ribulose-5-phosphate-3-epimerase
chr2_+_70166930 -1.32 2.70 4.44E-02 chr2:70166930-70167078 + 3UTR_last_exon,S ENST00000264444.2 MXD1 MAX dimerization protein 1
chr2_-_169103949 0.78 3.98 9.22E-02 chr2:169103949-169104145 - 5UTR_first_exon,S ENST00000355999.4 STK39 serine threonine kinase 39
187187
Persson et al.
chr2_-_202245651 -1.57 1.04 9.72E-02 chr2:202245651-202245660 -CDS_or_noncoding_inner_exon,S
ENST00000542292.1 TRAK2 trafficking protein, kinesin binding 2
chr2_-_235403494 -2.31 0.63 5.03E-02 chr2:235403494-235403598 - 3UTR_first_exon,S ENST00000390645.2 ARL4C ADP-ribosylation factor-like
4C
chr3_+_134334086 0.74 3.00 9.60E-02 chr3:134334086-134334242 + TSS,S ENST00000460895.1 EPHB1 EPH receptor B1
chr3_+_171757337 0.45 5.53 9.60E-02 chr3:171757337-171757442 + TSS,SENST00000415807.2/ENST00000392699.1/ENST00000421757.1
FNDC3B fibronectin type III domain containing 3B
chr3_+_182511253 0.39 6.73 9.60E-02 chr3:182511253-182511417 + TSS,S ENST00000323116.5/ENST00000493826.1 ATP11B ATPase, class VI, type 11B
chr3_+_9775826 1.96 0.50 9.22E-02 chr3:9775826-9775918 + CDS_or_noncoding_first_exon,S ENST00000457855.1 BRPF1 bromodomain and PHD finger
containing, 1
chr3_-_138553659 0.42 4.93 9.60E-02 chr3:138553659-138553813 - TSS,SENST00000462898.1/ENST00000483968.1/ENST00000461451.1
PIK3CBphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta
chr3_-_169840405 -1.47 1.18 9.22E-02 chr3:169840405-169840540 -CDS_or_noncoding_inner_exon,S
ENST00000494943.1/ENST00000495893.1/ENST00000467570.1/ENST00000486042.1
PHC3 polyhomeotic homolog 3 (Drosophila)
chr3_-_42814656 1.19 1.23 9.33E-02 chr3:42814656-42814773 - TSS,SENST00000310232.6/ENST00000492806.1/ENST00000435327.2
CCDC13 coiled-coil domain containing 13
chr4_+_123073450 0.49 5.97 9.22E-02 chr4:123073450-123073647 + TSS,S ENST00000264501.4 KIAA1109 KIAA1109
chr4_+_144435057 1.30 1.58 9.22E-02 chr4:144435057-144435163 + TSSregion500,S ENST00000283131.3 SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
chr4_+_35068262 -1.81 0.69 9.24E-02 chr4:35068262-35068268 + intergenic intergenic NA NA
chr4_+_38665642 -1.77 0.57 9.60E-02 chr4:38665642-38665645 + TSSregion500,SENST00000261438.5/ENST00000514033.1/ENST00000482150.2
KLF3 Kruppel-like factor 3 (basic)
188188
Persson et al.
chr4_+_78085630 -3.28 0.56 3.70E-02 chr4:78085630-78085692 +CDS_or_noncoding_inner_exon,S
ENST00000316355.5/ENST00000354403.5/ENST00000502280.1/ENST00000395640.1/ENST00000497512.1
CCNG2 cyclin G2
chr4_-_85887749 0.55 4.50 9.60E-02 chr4:85887749-85887912 - TSSregion500,S
ENST00000322366.6/ENST00000295888.4/ENST00000509172.1/ENST00000502713.1
WDFY3 WD repeat and FYVE domain containing 3
chr5_+_133889496 -2.26 0.59 3.70E-02 chr5:133889496-133889505 +CDS_or_noncoding_inner_intron,S
ENST00000413974.2/ENST00000448712.2/ENST00000282605.4/ENST00000361895.2/ENST00000432594.1/ENST00000402835.1/ENST00000395003.1/ENST00000431355.1/ENST00000453515.1
PHF15 PHD finger protein 15
chr5_+_142548033 1.29 1.46 9.60E-02 chr5:142548033-142548044 +CDS_or_noncoding_first_intron,S
ENST00000486650.1 ARHGAP26 Rho GTPase activating protein 26
chr5_+_170252839 -1.52 1.21 7.71E-02 chr5:170252839-170252853 + intergenic intergenic NA NA
chr5_+_37249081 2.17 0.72 4.20E-02 chr5:37249081-37249240 + 5UTR_first_intron,AS
ENST00000425232.2/ENST00000274258.7/ENST00000388739.3
C5ORF42 NA
chr5_+_67589169 -1.83 0.78 9.60E-02 chr5:67589169-67589283 +CDS_or_noncoding_inner_exon,S
ENST00000521381.1/ENST00000521657.1/ENST00000396611.1/ENST00000274335.5/ENST00000320694.8/ENST00000521409.1/ENST00000336483.5/ENST00000519025.1/ENST00000523872.1/ENST00000518813.1/ENST00000520550.1
PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
chr5_+_77656326 0.42 4.99 9.60E-02 chr5:77656326-77656523 + TSS,S
ENST00000538629.1/ENST00000339292.4/ENST00000508271.2/ENST00000509998.1/ENST00000508822.1/ENST00000502681.2/ENST00000511551.1
SCAMP1 secretory carrier membrane protein 1
189189
Persson et al.
chr5_-_39202933 0.91 3.13 9.31E-02 chr5:39202933-39202960 - CDS_or_noncoding_first_exon,S ENST00000515010.1 FYB FYN binding protein
chr5_-_77590406 0.42 6.11 9.60E-02 chr5:77590406-77590572 - TSS,SENST00000519295.1/ENST00000535760.1/ENST00000535667.1
AP3B1 adaptor-related protein complex 3, beta 1 subunit
chr6_+_107077424 0.52 4.34 7.71E-02 chr6:107077424-107077549 + TSS,SENST00000369046.4/ENST00000369044.1/ENST00000467262.1
QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
chr6_+_116691961 0.61 5.70 3.70E-02 chr6:116691961-116692148 + TSS,S ENST00000359564.2 DSE dermatan sulfate epimerase
chr6_+_144606710 0.67 3.83 8.81E-02 chr6:144606710-144606829 + TSSregion500,S ENST00000433557.1 UTRN utrophin
chr6_+_31556483 -1.47 1.15 9.60E-02 chr6:31556483-31556534 + CDS_or_noncoding_last_exon,S
ENST00000376111.4/ENST00000460834.1/ENST00000464526.1/ENST00000488959.1
LST1 leukocyte specific transcript 1
chr6_+_42906854 -1.95 0.80 9.22E-02 chr6:42906854-42906917 + 3UTR_last_exon,S
ENST00000372836.4/ENST00000394142.3 CNPY3 canopy 3 homolog (zebrafish)
chr7_+_143080180 2.39 0.53 9.60E-02 chr7:143080180-143080182 + TSSregion500,S ENST00000446634.1 ZYX zyxin
chr7_+_150233616 -1.56 1.14 4.44E-02 chr7:150233616-150233622 + intergenic intergenic NA NA
chr7_+_76178627 0.70 3.50 9.30E-02 chr7:76178627-76178744 + TSS,SENST00000418663.1/ENST00000450661.1/ENST00000423084.1
AC004980.7
chr7_+_90225935 0.93 2.89 7.71E-02 chr7:90225935-90226005 + TSSregion500,S ENST00000380050.3 CDK14 cyclin-dependent kinase 14
chr7_+_91570143 0.57 4.97 7.90E-02 chr7:91570143-91570321 + TSS,S
ENST00000356239.3/ENST00000394565.3/ENST00000413120.2/ENST00000358100.2/ENST00000359028.2/ENST00000394564.1/ENST00000493453.1
AKAP9 A kinase (PRKA) anchor protein (yotiao) 9
chr7_+_99528236 -2.41 0.51 4.44E-02 chr7:99528236-99528242 +CDS_or_noncoding_first_intron,S
ENST00000456499.1 RP4-604G5.1
chr7_-_5792504 1.72 0.56 9.60E-02 chr7:5792504-5792615 -CDS_or_noncoding_inner_exon,S
ENST00000425013.2/ENST00000389902.3/ENST00000389900.4/ENST00000458425.2
RNF216 ring finger protein 216
190190
Persson et al.
chr8_+_124780664 0.44 6.29 7.90E-02 chr8:124780664-124780813 + TSS,SENST00000521166.1/ENST00000334705.7/ENST00000395537.3
FAM91A1 family with sequence similarity 91, member A1
chr8_+_23424508 -1.06 5.10 9.60E-02 chr8:23424508-23424604 +CDS_or_noncoding_inner_exon,S
ENST00000518881.1/ENST00000523883.1 SLC25A37
solute carrier family 25 (mitochondrial iron transporter), member 37
chr8_+_28747868 0.51 4.86 9.60E-02 chr8:28747868-28747935 + TSS,S
ENST00000403668.2/ENST00000444075.1/ENST00000287701.10/ENST00000558662.1/ENST00000523613.1/ENST00000560599.1/ENST00000397358.3/ENST00000519662.1/ENST00000560357.1
HMBOX1 homeobox containing 1
chr8_-_62627045 0.70 4.24 8.81E-02 chr8:62627045-62627200 - TSS,S
ENST00000389213.5/ENST00000379454.4/ENST00000356457.5/ENST00000519234.1/ENST00000518068.1/ENST00000517856.1/ENST00000379449.5
ASPH aspartate beta-hydroxylase
chr9_-_74979780 1.11 3.10 9.60E-02 chr9:74979780-74979938 - TSS,S ENST00000487330.1 ZFAND5 zinc finger, AN1-type domain 5
chr9_-_86153238 1.52 1.09 5.38E-02 chr9:86153238-86153338 - TSSregion500,SENST00000376438.1/ENST00000304195.3/ENST00000376422.2
FRMD3 FERM domain containing 3
chr9_-_88356719 0.48 6.09 9.22E-02 chr9:88356719-88356910 - TSS,SENST00000376083.3/ENST00000357081.3/ENST00000376081.4
AGTPBP1 ATP/GTP binding protein 1
chrM_+_15303 -1.85 1.76 9.60E-02 chrM:15303-15304 + intergenic intergenic NA NA
chrM_+_5462 -2.63 0.62 7.71E-02 chrM:5462-5463 + intergenic intergenic NA NA
chrX_+_117629770 0.55 4.45 9.24E-02 chrX:117629770-117629835 + TSSregion500,S ENST00000276204.6/ENST00000276202.7 DOCK11 dedicator of cytokinesis 11
191191
248
Persson et al.
Table E9. A differentially expressed tag cluster at chr1:154401669-154401846(+) in IL6R is located within the linkage disequilibrium (LD) block of rs4129267, an SNP associated with asthma by GWAS.
chr position r2 D' rsID ref alt MAF Distance to cluster
Enhancer ENCODE
(cell, enhancer)
Promoter Roadmap
Enhancer Roadmap (cell,
enhancer)
DNAse (production
center, cell/tissue treatment)
ChIP-seq proteins (cell,
protein, production
center, treatment)
Motifs
dbSNP functio
nal annotat
ion
1 154395839 0.83 0.92 rs6684439 C T 0.35 -6007 NHEK,5_Strong_Enhancer;HMEC,5_Strong_Enhancer;NHLF,5_Strong_Enhancer;HSMM,6_Weak_Enhancer;Huvec,5_Strong_Enhancer
PFF.1,6_TssD2
SK.MUS62,13_EnhA;CD34.MBP1480,11_EnhWk1;MUS.SC,13_EnhA;SK.MUS63,13_EnhA;R.SMUS,11_EnhWk1;CD4.NP,11_EnhWk1;PFM.2,13_EnhA;LIV.A,13_EnhA;CD3.P,14_Enh;LV,14_Enh;SPL,14_Enh;CC.TPC,11_EnhWk1;PFK.2,13_EnhA;PFM.3,13_EnhA;BR.H35,13_EnhA;CD34.MBP1536,11_EnhWk1;PFK.3,13_EnhA;ADI.MSC,13_EnhA;CCIP.LSMPTP,13_EnhA;ADI.NUC,13_EnhA;ST.MUC,13_EnhA;PFM.1,13_EnhA;SK.MUS,13_EnhA;R.MUC31,11_EnhWk1;PFF.2,13_EnhA;ESO,13_EnhA;DUO.SMUS,11_EnhWk1;MSC.ADIPC,13_EnhA;CD34.MBP1562,13_EnhA;BN.SN,13_EnhA;CD15.P,13_EnhA;BR.MYO,11_EnhWk
Duke,PanIslets,None
. AP-1_disc8;HDAC2_disc6;NF-kappaB_disc3;Pax-4_5;STAT_known1;STAT_known2
INT
192192
249250251
Persson et al.
1;H1.DMSC,13_EnhA;CD34.C,13_EnhA;IMR90,13_EnhA;HD.CD56MESC,11_EnhWk1;HUES64,11_EnhWk1;R.MUC29,11_EnhWk1;GAS,11_EnhWk1;PANC.I,14_Enh;CD34.MBP1549,11_EnhWk1;CCC.TREGP,9_TxEnhG1;BN.ITL,14_Enh;KID.FE,11_EnhWk1;COL.SMUS,14_Enh;DUO.MUC61,11_EnhWk1;CD4.MP,11_EnhWk1;CCIP.LSTP,14_Enh;BN.HM150,13_EnhA;ST.SMUS28,14_Enh;BN.AG,13_EnhA;CCCRA.NP,13_EnhA;CHON.BMMSC,13_EnhA;BM.MSC,11_EnhWk1;BN.AC,13_EnhA;BN.MFL,13_EnhA;NCC.COR2,11_EnhWk1;BN.CC,13_EnhA;NCC.GED2,11_EnhWk1
1 154405024 0.87 0.94 rs56383622 A G 0.36 3178
HMEC,5_Strong_Enhancer;GM12878,7_Weak_Enhancer;NHLF,5_Strong_Enhancer;H1,7_Weak_Enhancer;NHEK,5_Strong_Enhancer;HSM
.
CCC.TREGP,9_TxEnhG1;LIV.A,9_TxEnhG1;GAS,11_EnhWk1;SK.MUS62,9_TxEnhG1;BN.MFL,14_Enh;PFK.2,13_EnhA;BR.MYO,9_TxEnhG1;HUES48,11_EnhWk1;BR.H35,11_EnhWk1;PFK.3,13_EnhA;H1,12_EnhWk2;HUES6,13_
. . . INT
193193
Persson et al.
M,7_Weak_Enhancer;HepG2,7_Weak_Enhancer
EnhA;PFF.1,11_EnhWk1;IPS.DF19,11_EnhWk1;H1.DMSC,11_EnhWk1;CCIP.LSTP,13_EnhA;IPS.18,12_EnhWk2;SK.MUS63,14_Enh;ES.I3,11_EnhWk1;IPS.DF6,11_EnhWk1;ST.SMUS28,13_EnhA;CC.TPC,13_EnhA;CD8.NP,11_EnhWk1;PFM.3,9_TxEnhG1;CCIP.LSMPTP,13_EnhA;ST.MUC,11_EnhWk1;PFF.2,14_Enh;BN.AC,11_EnhWk1;DUO.SMUS,14_Enh;BN.ITL,14_Enh;CD8.MP,11_EnhWk1;LV,14_Enh;CD34.C,9_TxEnhG1;SPL,9_TxEnhG1;COL.SMUS,13_EnhA;R.MUC31,14_Enh;BN.HM150,11_EnhWk1;BN.SN,14_Enh;CCCRA.NP,11_EnhWk1;DUO.MUC61,14_Enh;PFM.1,14_Enh;CD4.MP,11_EnhWk1;ADI.NUC,14_Enh;ESO,14_Enh;MSC.ADIPC,14_Enh;HRT.FE,14_Enh;ADI.MSC,14_Enh;IPS.20,12_EnhWk2;CD4.NP,11_EnhWk1;CD15.P,9_TxEnhG1;BM.MSC,14_Enh;CHON.BMMSC,11_EnhWk1;P
194194
Persson et al.
FM.2,9_TxEnhG1;CD34.MBP1562,9_TxEnhG1;MUS.SC,14_Enh;CCCRO.MP,14_Enh;R.SMUS,9_TxEnhG1
1 154406656 0.87 0.94 rs4845620 A G 0.36 4810
NHEK,5_Strong_Enhancer;HMEC,7_Weak_Enhancer;NHLF,5_Strong_Enhancer
ST.SMUS28,2_TssF;BM.MSC,6_TssD2;DUO.SMUS,3_TssA;COL.SMUS,3_TssA
PFK.3,13_EnhA;DUO.MUC61,14_Enh;ADI.MSC,13_EnhA;R.MUC29,9_TxEnhG1;BN.SN,14_Enh;SK.MUS63,13_EnhA;BN.AC,14_Enh;MUS.SC,14_Enh;BR.MYO,11_EnhWk1;PFM.2,9_TxEnhG1;CD4.MP,14_Enh;PFF.2,14_Enh;CCCRA.NP,14_Enh;GAS,14_Enh;PFF.1,14_Enh;CCIP.LSMPTP,14_Enh;HUES6,14_Enh;ESO,14_Enh;SK.MUS62,14_Enh;R.SMUS,11_EnhWk1;R.MUC31,13_EnhA;LNG.FE,11_EnhWk1;PFM.3,9_TxEnhG1;CHON.BMMSC,13_EnhA;ADI.NUC,13_EnhA;MSC.ADIPC,13_EnhA;SK.MUS,13_EnhA;PFK.2,13_EnhA;PFM.1,13_EnhA;BN.HM150,13_EnhA;NCC.COR2,11_EnhWk1;HRT.FE,13_EnhA;LV,13_EnhA;ST.MUC,13_EnhA
. .
HMG-IY_2;Mef2_disc1;SIX5_disc4
INT
195195
Persson et al.
1 154407419 0.87 0.94 rs7518199 A C 0.36 5573
K562,7_Weak_Enhancer;NHLF,4_Strong_Enhancer;NHEK,5_Strong_Enhancer
COL.SMUS,3_TssA;ADI.MSC,2_TssF;R.SMUS,6_TssD2;DUO.MUC61,2_TssF;ST.SMUS28,2_TssF;MSC.ADIPC,2_TssF;DUO.SMUS,2_TssF
BN.AC,14_Enh;PFM.2,9_TxEnhG1;ESO,14_Enh;HRT.FE,13_EnhA;LV,13_EnhA;ST.MUC,13_EnhA;CD4.MP,9_TxEnhG1;CCIP.LSMPTP,9_TxEnhG1;LIV.A,9_TxEnhG1;BN.FE2,11_EnhWk1;CCCRA.NP,9_TxEnhG1;PFF.1,9_TxEnhG1;R.MUC29,10_TxEnhG2;BN.MFL,9_TxEnhG1;BR.MYO,9_TxEnhG1;BN.ITL,14_Enh;SK.MUS,10_TxEnhG2;COL.MUC32,9_TxEnhG1;SK.MUS63,9_TxEnhG1;PFK.3,9_TxEnhG1;PFK.2,9_TxEnhG1;PFM.1,9_TxEnhG1;PFM.3,9_TxEnhG1;LNG.FE,11_EnhWk1;PFF.2,9_TxEnhG1;BN.HM150,9_TxEnhG1;ADI.NUC,10_TxEnhG2;BM.MSC,13_EnhA;CHON.BMMSC,13_EnhA;R.MUC31,10_TxEnhG2;SK.MUS62,10_TxEnhG2;GAS,9_TxEnhG1;MUS.SC,11_EnhWk1;BN.SN,14_Enh
UW,HMF,None;UW,NHDF-Ad,None
. NRSF_known3 INT
196196
Persson et al.
1 154407713 0.87 0.94 rs7521458 T C 0.36 5867NHEK,5_Strong_Enhancer
R.SMUS,6_TssD2;ST.SMUS28,2_TssF;MSC.ADIPC,2_TssF;COL.SMUS,2_TssF;DUO.SMUS,3_TssA
BN.AC,14_Enh;PFM.2,9_TxEnhG1;ESO,14_Enh;HRT.FE,13_EnhA;LV,13_EnhA;ST.MUC,13_EnhA;LIV.A,9_TxEnhG1;PFF.1,9_TxEnhG1;R.MUC29,10_TxEnhG2;BN.MFL,9_TxEnhG1;COL.MUC32,9_TxEnhG1;SK.MUS63,9_TxEnhG1;PFK.3,9_TxEnhG1;PFK.2,9_TxEnhG1;PFM.1,9_TxEnhG1;PFM.3,9_TxEnhG1;R.MUC31,10_TxEnhG2;SK.MUS62,10_TxEnhG2;GAS,9_TxEnhG1;MUS.SC,11_EnhWk1;BN.SN,14_Enh;ADI.MSC,13_EnhA;BM.MSC,14_Enh;CHON.BMMSC,11_EnhWk1;ADI.NUC,9_TxEnhG1;DUO.MUC61,9_TxEnhG1;SK.MUS,9_TxEnhG1
. . TCF12_disc6 INT
1 154409730 0.87 0.94 rs4845621 G A 0.36 7884 .
ST.SMUS28,4_TssWk;COL.SMUS,4_TssWk
PFK.3,11_EnhWk1;PFK.2,14_Enh;ST.MUC,11_EnhWk1;H1.DMSC,11_EnhWk1
. .
CACD_1;CACD_2;Klf4;Klf7;NRSF_disc9;SP1_known4
INT
1 154411419 0.87 0.94 rs4845622 A C 0.36 9573
GM12878,7_Weak_Enhancer;HepG2,7_Weak_Enhancer
.
CC.TPC,9_TxEnhG1;LIV.A,9_TxEnhG1;CCIP.LSMPTP,9_TxEnhG1;COL.SMUS,9_TxEnhG1;H1.DMSC,14_Enh;CD4.MP,11_EnhWk1;CCC.TREGP,9_TxEnhG1;PFM.
Duke,GM19238,None . Foxm1 INT
197197
Persson et al.
2,9_TxEnhG1;CCCRA.NP,13_EnhA;CD4.NP,11_EnhWk1;ADI.NUC,14_Enh;DUO.MUC61,14_Enh;CD8.NP,11_EnhWk1;COL.MUC32,11_EnhWk1;CCIP.LSTP,13_EnhA;DUO.SMUS,9_TxEnhG1;CD3.P,13_EnhA;CD8.MP,11_EnhWk1;R.MUC31,11_EnhWk1
1 154414037 0.87 0.94 rs4393147 C T 0.36 12191 GM12878,7_Weak_Enhancer;HMEC,7_Weak_Enhancer;NHLF,7_Weak_Enhancer
CD4.NP,6_TssD2;CD3.P,2_TssF;CCIP.LSMPTP,2_TssF;CD8.MP,6_TssD2
LIV.A,9_TxEnhG1;CCC.TREGP,9_TxEnhG1;CC.TPC,13_EnhA;CCCRA.NP,13_EnhA;IMR90,15_EnhP;CCIP.LSTP,13_EnhA;CCCRO.MP,13_EnhA;PFM.2,9_TxEnhG1;CCC.TMP,14_Enh;H1.DMSC,11_EnhWk1;COL.SMUS,9_TxEnhG1;PFM.1,9_TxEnhG1;PFM.3,9_TxEnhG1;CD34.C,11_EnhWk1;HD.CD56MESC,11_EnhWk1;PFF.1,11_EnhWk1;CD34.MBP1480,11_EnhWk1;PFK.2,11_EnhWk1;BR.MYO,11_EnhWk1;R.SMUS,9_TxEnhG1;SPL,11_EnhWk1;CD34.MBP1562,13_EnhA;CD4.MP,13_EnhA;CD15.P,9_TxEnhG1;CD8.NP,13_EnhA;PFK.3,1
. . Hdx;Myc_disc5;Pou5f1_known2;VDR_2
INT
198198
Persson et al.
1_EnhWk1;ESO,11_EnhWk1;IPS.DF19,11_EnhWk1;CD34.MBP1536,9_TxEnhG1;ES.I3,11_EnhWk1;ST.SMUS28,9_TxEnhG1
1 154414086 0.87 0.94 rs4453032 A G 0.36 12240
GM12878,7_Weak_Enhancer;HMEC,7_Weak_Enhancer;NHLF,7_Weak_Enhancer
CD4.NP,6_TssD2;CD3.P,2_TssF;CCIP.LSMPTP,2_TssF;CD8.MP,6_TssD2
LIV.A,9_TxEnhG1;CCC.TREGP,9_TxEnhG1;CC.TPC,13_EnhA;CCCRA.NP,13_EnhA;IMR90,15_EnhP;CCIP.LSTP,13_EnhA;CCCRO.MP,13_EnhA;PFM.2,9_TxEnhG1;CCC.TMP,14_Enh;H1.DMSC,11_EnhWk1;COL.SMUS,9_TxEnhG1;PFM.1,9_TxEnhG1;PFM.3,9_TxEnhG1;CD34.C,11_EnhWk1;HD.CD56MESC,11_EnhWk1;PFF.1,11_EnhWk1;CD34.MBP1480,11_EnhWk1;PFK.2,11_EnhWk1;BR.MYO,11_EnhWk1;R.SMUS,9_TxEnhG1;SPL,11_EnhWk1;CD34.MBP1562,13_EnhA;CD4.MP,13_EnhA;CD15.P,9_TxEnhG1;CD8.NP,13_EnhA;PFK.3,11_EnhWk1;ESO,11_EnhWk1;IPS.DF19,11_EnhWk1;CD34.MBP1536,9_TxEnhG1;ES.I3,11_EnhWk1;ST.SMUS28,9_TxEnhG1
. .Maf_known2;PPAR_3;PU.1_known2
INT
199199
Persson et al.
1 154414296 0.87 0.94 rs6664201 C T 0.36 12450 GM12878,7_Weak_Enhancer;NHLF,7_Weak_Enhancer;HSMM,7_Weak_Enhancer;Huvec,7_Weak_Enhancer;NHEK,7_Weak_Enhancer;HMEC,6_Weak_Enhancer
CD4.NP,6_TssD2;CD3.P,2_TssF;CCIP.LSMPTP,2_TssF;CCCRA.NP,2_TssF
LIV.A,9_TxEnhG1;CCC.TREGP,9_TxEnhG1;CC.TPC,13_EnhA;IMR90,15_EnhP;CCIP.LSTP,13_EnhA;CCCRO.MP,13_EnhA;PFM.2,9_TxEnhG1;CCC.TMP,14_Enh;H1.DMSC,11_EnhWk1;PFM.1,9_TxEnhG1;PFM.3,9_TxEnhG1;CD34.C,11_EnhWk1;HD.CD56MESC,11_EnhWk1;PFF.1,11_EnhWk1;CD34.MBP1480,11_EnhWk1;PFK.2,11_EnhWk1;BR.MYO,11_EnhWk1;R.SMUS,9_TxEnhG1;SPL,11_EnhWk1;CD34.MBP1562,13_EnhA;CD4.MP,13_EnhA;CD15.P,9_TxEnhG1;CD8.NP,13_EnhA;PFK.3,11_EnhWk1;ESO,11_EnhWk1;IPS.DF19,11_EnhWk1;CD34.MBP1536,9_TxEnhG1;ES.I3,11_EnhWk1;ST.SMUS28,9_TxEnhG1;PANC,11_EnhWk1;MUS.SC,11_EnhWk1;CD34.MBP1549,11_EnhWk1;CD34.P,11_EnhWk1;COL.SMUS,13_EnhA;BR.H35,11_EnhWk1;H1.BMP4DT,12_EnhWk2;PFF.2,11_EnhWk1;H
UW,Adult_CD4_Th0,None;UW,HMVEC-dBl-Ad,None;UW,HMVEC-dBl-Neo,None
. HEN1_1 INT
200200
Persson et al.
UES64,11_EnhWk1;ES.WA7,11_EnhWk1;CD8.MP,11_EnhWk1
1 154415396 0.83 0.94 rs4845372 C A 0.37 13550
NHLF,7_Weak_Enhancer;HSMM,7_Weak_Enhancer;HMEC,7_Weak_Enhancer;K562,7_Weak_Enhancer
.
LIV.A,9_TxEnhG1;CC.TPC,13_EnhA;PFM.2,9_TxEnhG1;CCC.TMP,14_Enh;HD.CD56MESC,11_EnhWk1;ST.SMUS28,9_TxEnhG1;CD8.MP,11_EnhWk1;CD4.NP,11_EnhWk1;CD3.P,13_EnhA;CD4.MP,11_EnhWk1;CCCRA.NP,13_EnhA;COL.SMUS,11_EnhWk1;CCIP.LSMPTP,13_EnhA;CD8.NP,11_EnhWk1;PFF.2,9_TxEnhG1;PFF.1,11_EnhWk1;ESO,14_Enh;H1.DMSC,11_EnhWk1
. . Pax-4_4 INT
1 154415777 0.83 0.94 rs4845623 A G 0.37 13931 HSMM,6_Weak_Enhancer
. LIV.A,9_TxEnhG1;PFM.2,9_TxEnhG1;HD.CD56MESC,11_EnhWk1;ST.SMUS28,9_TxEnhG1;CD8.MP,11_EnhWk1;CD4.NP,11_EnhWk1;CD4.MP,11_EnhWk1;CCCRA.NP,13_EnhA;CD8.NP,11_EnhWk1;PFF.2,9_TxEnhG1;ESO,14_Enh;H1.DMSC,11_EnhWk1;COL.SMUS,9_TxEnhG1;CD3.P,9_TxEnhG1;R.SMUS,9_TxEnhG1;CC.TPC,9_TxEnhG1;A
. . . INT
201201
Persson et al.
DI.MSC,11_EnhWk1;BN.MFL,11_EnhWk1;CCCRO.MP,11_EnhWk1;BN.FE2,11_EnhWk1;PFK.2,9_TxEnhG1;ADI.NUC,9_TxEnhG1;CCIP.LSMPTP,9_TxEnhG1;SK.MUS63,11_EnhWk1;PFF.1,14_Enh
1 154416935 0.87 0.94 rs12753254 G A 0.36 15089 . .
CD4.NP,11_EnhWk1;CD8.NP,11_EnhWk1;H1.DMSC,11_EnhWk1;CC.TPC,9_TxEnhG1;PFF.1,14_Enh;CD4.MP,9_TxEnhG1;CCIP.LSTP,11_EnhWk1;CCCRO.MP,11_EnhWk1;PFM.3,9_TxEnhG1;CD3.P,14_Enh;PFF.2,14_Enh;PFK.2,14_Enh;MSC.ADIPC,14_Enh;CCCRA.NP,14_Enh;CCC.TREGP,9_TxEnhG1
. .NRSF_disc9;SETDB1_disc1;Zfx
INT
1 154416969 0.87 0.94 rs12730036
C T 0.36 15123 . . CD4.NP,11_EnhWk1;CD8.NP,11_EnhWk1;H1.DMSC,11_EnhWk1;CC.TPC,9_TxEnhG1;PFF.1,14_Enh;CD4.MP,9_TxEnhG1;CCIP.LSTP,11_EnhWk1;CCCRO.MP,11_EnhWk1;PFM.3,9_TxEnhG1;CD3.P,14_Enh;PFF.2,14_Enh;PFK.2,14_Enh;MSC.ADIPC,14_Enh;CCCRA.NP,14_Enh;CCC.TREGP,9_
. . AP-1_disc7;Ets_disc7;Hic1_1;Osr
INT
202202
Persson et al.
TxEnhG1
1 154417829 0.87 0.94 rs4845373 C T 0.36 15983
NHLF,5_Strong_Enhancer;GM12878,7_Weak_Enhancer;NHEK,7_Weak_Enhancer
.
CD4.NP,11_EnhWk1;CD8.NP,11_EnhWk1;CC.TPC,9_TxEnhG1;CCIP.LSTP,11_EnhWk1;CCCRO.MP,11_EnhWk1;PFM.3,9_TxEnhG1;MSC.ADIPC,14_Enh;CCC.TREGP,9_TxEnhG1;PFF.1,13_EnhA;CD8.MP,11_EnhWk1;CD34.MBP1536,11_EnhWk1;CD34.MBP1562,9_TxEnhG1;CD34.C,11_EnhWk1;ADI.MSC,11_EnhWk1;IMR90,13_EnhA;PFF.2,13_EnhA;CHON.BMMSC,11_EnhWk1;HD.CD56MESC,11_EnhWk1;CD34.MBP1480,11_EnhWk1;COL.SMUS,9_TxEnhG1;ESO,14_Enh;ST.SMUS28,9_TxEnhG1;PFM.2,9_TxEnhG1;CD34.P,11_EnhWk1;DUO.MUC61,11_EnhWk1;CCIP.LSMPTP,9_TxEnhG1;DUO.SMUS,14_Enh;PFM.1,9_TxEnhG1;MUS.SC,11_EnhWk1;PFK.2,14_Enh;R.MUC29,9_TxEnhG1;CD4.MP,11_EnhWk1;CCCRA.NP,11_EnhWk1;H1.DMSC,14_Enh
AWG,Th1,None;Duke,GM12891,None;Duke,GM12892,None;Duke,GM19238,None;Duke,GM19239,None;Duke,GM19240,None;Duke,Osteobl,None;UW,CMK,None;UW,GM06990,None;UW,GM12864,None;UW,GM12865,None;UW,NB4,None;UW,Th2,None
GM12878,BCL11A,HudsonAlpha,None;GM12878,EBF1,HudsonAlpha,None;GM12878,PAX5N19,HudsonAlpha,None;GM15510,NFKB,Stanford,None
CTCF_disc1;CTCF_known1;RFX5_disc1;Rad21_disc1;SMC3_disc1
INT
203203
Persson et al.
1 154418415 0.88 0.95 rs11265613 T C 0.36 16569
GM12878,7_Weak_Enhancer;NHLF,5_Strong_Enhancer
PFF.1,2_TssF
CC.TPC,9_TxEnhG1;PFM.3,9_TxEnhG1;CD8.MP,11_EnhWk1;IMR90,13_EnhA;PFF.2,13_EnhA;CHON.BMMSC,11_EnhWk1;HD.CD56MESC,11_EnhWk1;COL.SMUS,9_TxEnhG1;ESO,14_Enh;ST.SMUS28,9_TxEnhG1;PFM.2,9_TxEnhG1;DUO.SMUS,14_Enh;PFM.1,9_TxEnhG1;MUS.SC,11_EnhWk1;CD4.MP,11_EnhWk1;CCCRA.NP,11_EnhWk1;H1.DMSC,14_Enh;CCCRO.MP,14_Enh;LNG.FE,11_EnhWk1;ADI.NUC,13_EnhA;MSC.ADIPC,13_EnhA;R.SMUS,9_TxEnhG1;SK.MUS,9_TxEnhG1;BM.MSC,11_EnhWk1;ADI.MSC,13_EnhA
. .
Foxp1;GATA_known8;HDAC2_disc6;Mef2_known3;Zfp105;p300_disc5
INT
1 154418749 0.88 0.96 rs4576655 C T 0.37 16903 GM12878,7_Weak_Enhancer;HSMM,6_Weak_Enhancer;NHLF,4_Strong_Enhancer
PFF.1,2_TssF;COL.SMUS,6_TssD2
CC.TPC,9_TxEnhG1;PFM.3,9_TxEnhG1;CD8.MP,11_EnhWk1;IMR90,13_EnhA;PFF.2,13_EnhA;CHON.BMMSC,11_EnhWk1;HD.CD56MESC,11_EnhWk1;ESO,14_Enh;ST.SMUS28,9_TxEnhG1;PFM.2,9_TxEnhG1;DUO.SMUS,14_Enh;PFM.1,9_TxEnhG1;MUS.SC,11_E
Duke,Medullo,None;Duke,PanIslets,None;UW,HMVEC-LBl,None
. AP-1_disc6;PRDM1_known1;Pax-5_known2;Pax-5_known3
INT
204204
Persson et al.
nhWk1;CCCRA.NP,11_EnhWk1;H1.DMSC,14_Enh;ADI.NUC,13_EnhA;MSC.ADIPC,13_EnhA;R.SMUS,9_TxEnhG1;SK.MUS,9_TxEnhG1;BM.MSC,11_EnhWk1;ADI.MSC,13_EnhA;H1.BMP4DT,15_EnhP;LNG.FE,13_EnhA;IPS.DF19,11_EnhWk1;ES.I3,11_EnhWk1;HUES64,11_EnhWk1
1 154418879 0.87 0.95 rs4537545 C T 0.37 17033 GM12878,7_Weak_Enhancer;HSMM,7_Weak_Enhancer;NHLF,5_Strong_Enhancer
PFF.1,2_TssF;COL.SMUS,6_TssD2
PFM.3,9_TxEnhG1;CD8.MP,11_EnhWk1;PFF.2,13_EnhA;CHON.BMMSC,11_EnhWk1;HD.CD56MESC,11_EnhWk1;ST.SMUS28,9_TxEnhG1;PFM.2,9_TxEnhG1;PFM.1,9_TxEnhG1;MUS.SC,11_EnhWk1;CCCRA.NP,11_EnhWk1;H1.DMSC,14_Enh;R.SMUS,9_TxEnhG1;SK.MUS,9_TxEnhG1;BM.MSC,11_EnhWk1;ADI.MSC,13_EnhA;LNG.FE,13_EnhA;IPS.DF19,11_EnhWk1;ES.I3,11_EnhWk1;HUES64,11_EnhWk1;IMR90,14_Enh;PFK.2,11_EnhWk1;MSC.ADIPC,14_Enh;CCC.TREGP,9_TxEnhG1;ADI.NUC,14_En
AWG,H1-hESC,None;AWG,HMEC,None;AWG,HSMM,None;AWG,HSMMtube,None;Duke,8988T,None;Duke,AoSMC,None;Duke,Chorion,None;Duke,FibroP,None;Duke,Fibrobl,None;Duke,Gliobla,None;Duke,HSMM_emb,None;Duke,Melano,None;Duke,Myometr,None;Duke,Osteobl,None;Duke,PanIsletD,None;Duke,ProgFib,None;Duke,Stellate,None;Duke,Urothelia,None;Duke,Urothelia,UT189;NA,HTR8svn,None;UW,AG04449,None;UW,AG04450,None;UW,AG09309,None;UW,AG09319,None;UW
HepG2,MAFK,Stanford,None
. INT
205205
Persson et al.
h
,AG10803,None;UW,AoAF,None;UW,BJ,None;UW,H7-hESC,None;UW,HA-h,None;UW,HA-sp,None;UW,HAEpiC,None;UW,HAc,None;UW,HBMEC,None;UW,HCF,None;UW,HCFaa,None;UW,HCM,None;UW,HCPEpiC,None;UW,HConF,None;UW,HFF,None;UW,HFF-Myc,None;UW,HGF,None;UW,HIPEpiC,None;UW,HMF,None;UW,HMVEC-LBl,None;UW,HNPCEpiC,None;UW,HPAF,None;UW,HPdLF,None;UW,HRCEpiC,None;UW,HRE,None;UW,HRPEpiC,None;UW,NH-A,None;UW,NHDF-Ad,None;UW,NHDF-neo,None;UW,NHLF,None;UW,NT2-D1,None;UW,SKMC,None;UW,WI-38,4OHTAM_20nM_72hr
1 154419892 0.86 0.96 rs12730935
G A 0.34 18046 NHLF,7_Weak_Enhancer
. ADI.NUC,14_Enh;LNG.FE,14_Enh;IMR90,14_Enh;MSC.ADIPC,14_Enh;ADI.MSC,1
. . . INT
206206
Persson et al.
4_Enh
1 154420028 0.89 0.95 rs201517815
TAC T 0.36 18182 . .
ADI.NUC,14_Enh;LNG.FE,14_Enh;IMR90,14_Enh;MSC.ADIPC,14_Enh;ADI.MSC,14_Enh
. .
Cdx;Foxp1;Irx;Pou2f2_known2;Pou3f2_2;TATA_known1
INT
1 154420087 1 1 rs61812598 G A 0.36 18241 . .
ADI.NUC,14_Enh;LNG.FE,14_Enh;IMR90,14_Enh;MSC.ADIPC,14_Enh;ADI.MSC,14_Enh
. . AP-3;Pou3f3 INT
1 154420402 0.96 1 rs7512646 G C 0.37 18556 . .
LNG.FE,14_Enh;ADI.MSC,14_Enh;COL.SMUS,9_TxEnhG1;ADI.NUC,11_EnhWk1;IPS.DF19,11_EnhWk1;ESO,14_Enh;IMR90,9_TxEnhG1;MSC.ADIPC,9_TxEnhG1
. .
ERalpha-a_known4;YY1_disc1;Zic_2;Zic_3
INT
1 154420778 0.96 1 rs7529229 T C 0.37 18932 . .
COL.SMUS,9_TxEnhG1;IPS.DF19,11_EnhWk1;ESO,14_Enh;IMR90,9_TxEnhG1;MSC.ADIPC,9_TxEnhG1;R.MUC31,9_TxEnhG1;SK.MUS63,9_TxEnhG1;ADI.MSC,13_EnhA;LNG.FE,13_EnhA;HD.CD184EC,15_EnhP;HD.CD56MESC,11_EnhWk1;ADI.NUC,9_TxEnhG1
AWG,HSMMtube,None;Duke,Osteobl,None
. ZEB1_known5 INT
1 154425456 1 1 rs12126142 G A 0.36 23610 . .
CD15.P,9_TxEnhG1;PFF.1,14_Enh;PFK.2,14_Enh;ADI.NUC,14_Enh;MSC.ADIPC,11_EnhWk1;ADI.MSC,11_EnhWk1;BN.SN,14_Enh
. . LXR_2;Myc_disc9;Sp4 INT
207207
Persson et al.
1 154426264 1 1 rs4129267 C T 0.36 24418 NHLF,5_Strong_Enhancer;HMEC,5_Strong_Enhancer;HSMM,6_Weak_Enhancer;Huvec,7_Weak_Enhancer;HepG2,6_Weak_Enhancer;GM12878,7_Weak_Enhancer;NHEK,5_Strong_Enhancer
CD15.P,2_TssF;PFF.1,6_TssD2
IMR90,9_TxEnhG1;CD34.MBP1562,9_TxEnhG1;PFK.2,13_EnhA;CCIP.LSMPTP,9_TxEnhG1;BR.MYO,9_TxEnhG1;BR.H35,11_EnhWk1;CD34.MBP1480,11_EnhWk1;CD34.MBP1536,9_TxEnhG1;PFK.3,11_EnhWk1;PFM.3,9_TxEnhG1;SK.MUS62,9_TxEnhG1;ADI.NUC,13_EnhA;CCCRA.NP,11_EnhWk1;DUO.SMUS,9_TxEnhG1;LV,9_TxEnhG1;ST.MUC,9_TxEnhG1;CD8.NP,11_EnhWk1;ST.SMUS28,9_TxEnhG1;BM.MSC,11_EnhWk1;BN.AG,9_TxEnhG1;CHON.BMMSC,11_EnhWk1;GAS,9_TxEnhG1;MUS.SC,9_TxEnhG1;SK.MUS,9_TxEnhG1;CD3.P,9_TxEnhG1;H1.DMSC,11_EnhWk1;CD4.MP,9_TxEnhG1;BN.CC,11_EnhWk1;BN.ITL,11_EnhWk1;CD34.C,9_TxEnhG1;CC.TPC,9_TxEnhG1;CD8.MP,11_EnhWk1;ESO,14_Enh;NCC.COR2,11_EnhWk1;CCIP.LSTP,9_TxEnhG1;BN.MFL,9_TxEnhG1;DUO.MUC6
AWG,HMEC,None;AWG,HeLa-S3,None;AWG,HepG2,None;AWG,NHEK,None;Duke,AoSMC,None;Duke,FibroP,None;Duke,GM19240,None;Duke,Gliobla,None;Duke,Myometr,None;Duke,ProgFib,None;Duke,RWPE1,None;Duke,Stellate,None;Duke,Urothelia,None;Duke,Urothelia,UT189;Duke,pHTE,None;NA,HTR8svn,None;UW,AG04449,None;UW,AG04450,None;UW,AG09309,None;UW,AG10803,None;UW,Adult_CD4_Th0,None;UW,AoAF,None;UW,BJ,None;UW,H7-hESC,None;UW,HA-h,None;UW,HA-sp,None;UW,HAc,None;UW,HBMEC,None;UW,HCF,None;UW,HCFaa,None;UW,HCM,None;UW,HCPEpiC,None;UW,HConF,None;UW,HEEpiC,None;UW,HFF,None;UW,HFF-Myc,None;UW,HGF,None;UW,HIPEpiC,None;UW,HL-60,None;UW,H
MCF10A-Er-Src,STAT3,Harvard(Weissman),EtOH_0.01pct_4hr;MCF10A-Er-Src,STAT3,Harvard(Weissman),TAM_1uM_36hr;U2OS,KAP1,Stanford,None
EBF_known3;Elf3;Pou1f1_2
INT
208208
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1,9_TxEnhG1;CD34.MBP1508,9_TxEnhG1;SPL,9_TxEnhG1;LNG.FE,11_EnhWk1;BN.FE2,12_EnhWk2;CD4.NP,9_TxEnhG1;COL.MUC32,11_EnhWk1;ES.I3,11_EnhWk1;CD19.P,13_EnhA;CD34.P,11_EnhWk1;PFF.2,11_EnhWk1;NCC.GED2,11_EnhWk1;ADI.MSC,11_EnhWk1;BN.AC,14_Enh;HD.CD56MESC,11_EnhWk1;MSC.ADIPC,11_EnhWk1;BN.SN,11_EnhWk1
MF,None;UW,HMVEC-LBl,None;UW,HMVEC-dBl-Ad,None;UW,HMVEC-dBl-Neo,None;UW,HNPCEpiC,None;UW,HPAF,None;UW,HPF,None;UW,HPdLF,None;UW,HRCEpiC,None;UW,HRE,None;UW,HRPEpiC,None;UW,HVMF,None;UW,Monocytes-CD14+_RO01746,None;UW,NB4,None;UW,NH-A,None;UW,NHDF-Ad,None;UW,NHDF-neo,None;UW,NHLF,None;UW,NT2-D1,None;UW,RPTEC,None;UW,SAEC,None;UW,SK-N-MC,None;UW,SKMC,None;UW,WI-38,4OHTAM_20nM_72hr;UW,WI-38,None
1 154426970 0.99 1 rs2228145 A C.T
0.36 25124 HMEC,7_Weak_Enhancer;GM12878,7_Weak_Enhancer
CD15.P,2_TssF
PFK.2,13_EnhA;CCIP.LSMPTP,9_TxEnhG1;BR.MYO,9_TxEnhG1;NCC.COR2,11_EnhWk1;CCIP.LSTP,9_TxEnhG1;BN.MFL,9_TxEnhG1;DUO.MUC61,9_TxEnhG1;CD34.MBP1508,9_TxEnhG1;SPL,
. . . NSM;INT
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9_TxEnhG1;CD19.P,13_EnhA;CD34.P,11_EnhWk1;BN.SN,11_EnhWk1;CCCRA.NP,11_EnhWk1
1 154428283 0.97 0.99 rs12133641 A G 0.36 26437 . CD15.P,2_Ts
sF SPL,14_Enh . .
Cphx;Mrg1::Hoxa9_2;STAT_known3;TEF
INT
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Table E10. A differentially expressed tag cluster at chr22:37532297-37532440(-) in IL2RB is located within the linkage disequilibrium (LD)
block of rs2284033, an SNP associated with asthma by GWAS.
chr position r2 D' rsID ref alt MAF Distance to cluster
Enhancer ENCODE
Enhancer Roadmap
DNAse (production
center, cell/tissue treatment)
ChIP-seq proteins (cell, protein,
production center, treatment)
MotifsdbSNP
functional annotation
22 37531117 0.88 0.94 rs2543537 C T 0.42 1180 .IPS.DF19,11_EnhWk1;PFF.2,15_EnhP
. .
CTCF_disc5;CTCF_disc9;Rad21_disc7;Roaz_2;ZBTB7A_known1;Zic_4
INT
22 37531436 0.94 0.97 rs228953 G A 0.42 861 . .
Duke,Medullo,None;Duke,Melano,None;Duke,Osteobl,None
.
ERalpha-a_disc4;NF-E2_disc4;NF-E2_known1;PLAG1;Rad21_disc1
SYN
22 37532665 0.95 0.99 rs228954 T C 0.42 -225 . . UW,Caco-2,None . PPAR_2 INT
22 37532699 0.92 0.98 rs228955 C T 0.41 -259 . .Duke,GM19240,None;UW,Caco-2,None
.
AP-1_disc7;CHD2_disc3;ETF;Ets_disc9;Mtf1_1;NRSF_disc4;NRSF_known1;Pax-5_known1;Rad21_disc5;SRF_disc2;VDR_2
INT
22 37533786 0.96 0.99 rs228957 C G 0.43 -1346 .
CCIP.LSMPTP,9_TxEnhG1;CCIP.LSTP,14_Enh;BR.MYO,14_Enh
AWG,Th1,None GM12878,PAX5C20,HudsonAlpha,None
PLAG1;Rad21_disc3;Zfp281;Zfp740
INT
22 37533795 0.98 0.99 rs228958 G C.T 0.42 -1355 .
CCIP.LSMPTP,9_TxEnhG1;CCIP.LSTP,14_Enh;BR.MYO,14_Enh
AWG,Th1,None GM12878,PAX5C20,HudsonAlpha,None . INT
22 37534034 1 1 rs2284033 G A 0.42 -1594 .
CCIP.LSMPTP,9_TxEnhG1;BR.MYO,14_Enh;CCIP.LSTP,14_Enh
Duke,Melano,None .
RORalpha1_1;RORalpha1_2;RORalpha1_3;RXR::LXR
INT
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253
254
255
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22 37534947 0.94 1 rs228960 G A 0.4 -2507NHEK,7_Weak_En
hancer
CCIP.LSMPTP,9_TxEnhG1;BR.MYO,14_Enh;SPL,9_TxEnhG1;PFK.2,11_EnhWk1;PFK.3,11_EnhWk1;CCIP.LSTP,13_EnhA;ESO,11_EnhWk1
AWG,GM12878,None;Duke,Fibrobl,None
.
CHD2_disc3;NRSF_disc8;Rad21_disc10;ZNF263_disc1
INT
22 37535948 0.89 0.96 rs228963 A G 0.41 -3508NHEK,7_Weak_En
hancer
CCIP.LSMPTP,9_TxEnhG1;BR.MYO,14_Enh;PFK.2,11_EnhWk1;PFK.3,11_EnhWk1;CCIP.LSTP,13_EnhA
AWG,GM12878,None;AWG,H1-hESC,None;AWG,HepG2,None;AWG,LNCaP,None;Duke,8988T,None;Duke,GM12892,None;Duke,GM18507,None;Duke,GM19239,None;Duke,GM19240,None;Duke,H9ES,None;Duke,Huh-7,None;Duke,Medullo,None;Duke,Osteobl,None;Duke,iPS,None;UW,CD34+_Mobilized,None;UW,Caco-2,None;UW,GM06990,None;UW,GM12865,None;UW,H7-hESC,None;UW,WERI-Rb-1,None
Caco-2,CTCF,UW,None;GM06990,CTCF,UW,None;H1-C,RAD21,HudsonAlpha,None;HepG2,CTCF,Broad,None;HepG2,CTCF,HudsonAlpha,None;HepG2,RAD21,HudsonAlpha,None;WERI-Rb-1,CTCF,UW,None
. INT
22 37537058 0.9 0.96 rs228965 C G 0.41 -4618 .
CCIP.LSMPTP,9_TxEnhG1;BR.MYO,14_Enh;CCC.TREGP,9_TxEnhG1;PFM.1,15_EnhP;CCIP.LSTP,14_Enh
Duke,GM19240,None;Duke,iPS,None
.
BDP1_disc1;CHD2_disc3;LBP-1_3;LBP-9;Rad21_disc6;Sin3Ak-20_disc6;p300_disc9
INT
22 37537514 0.87 0.94 rs228966 T C 0.41 -5074 .
CCIP.LSMPTP,9_TxEnhG1;CCC.TREGP,9_TxEnhG1;CCIP.LSTP,14_Enh;BR.MYO,13_EnhA
Duke,pHTE,None . . INT
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Table E11. Top ten significant transcription factor motifs from motif activity response
analysis (MARA) for the pairwise comparisons between sample groups for the proximal
promoter region (-300 to +100 bp) of all tag clusters near a known TSS, including our high-
confidence set of novel TSSs. A negative score implies lower motif activity in the first group
and a positive score higher activity.
Motif Score P-valueSA vs CA
STAT2,4,6 -6.45 3.11E-03ZNF148 -5.16 5.91E-03NFY{A,B,C} -5.13 9.45E-03MYFfamily 5.35 3.78E-04TFAP2B 5.59 1.39E-03ESR1 5.03 8.92E-03ZBTB6 5.29 9.25E-03MYB 6.54 9.70E-03MZF1 5.59 1.07E-02PRDM1 5.26 1.49E-02
CA vs CTRLPAX5 -5.46 3.45E-03TFAP2{A,C} -4.73 1.05E-02ELK1,4_GABP{A,B1} -5.71 1.18E-02PATZ1 -6.20 5.62E-02RREB1 -6.91 6.86E-02MTF1 -7.69 7.28E-02NFKB1_REL_RELA -6.51 9.39E-02STAT2,4,6 7.22 5.10E-03KLF4 6.42 1.03E-02SPI1 7.07 1.99E-02
SA vs CTRLPAX5 -9.21 4.73E-03STAT2,4,6 -6.56 8.23E-03ELK1,4_GABP{A,B1} -4.96 1.55E-02PATZ1 -9.15 6.31E-02MTF1 -6.69 7.33E-02RREB1 -8.03 7.48E-02NFKB1_REL_RELA -5.26 8.76E-02KLF4 5.70 1.09E-02TFAP2{A,C} 4.32 1.51E-02SPI1 6.73 2.23E-02
SA, therapy-resistant asthma; CA, controlled asthma; CTRL, healthy control.
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Table E12. Comparison between CAGE and microarray expression for genes differentially
expressed in the edgeR classic analysis for the pairwise comparisons SA vs CA, CA vs
CTRL, and SA vs CTRL. CAGE tag clusters and microarray probes were mapped to gene
symbols and the array data was then classified as concordant if the log2 fold change was
positive (>0.1) for significantly upregulated tag clusters or negative (<-0.1) for significantly
downregulated tag clusters. A tag cluster that matched several array probes with both positive
and negative log fold change values was classified as ‘mixed’. Results are shown separately
for genes where the corresponding tag cluster is located near the transcription start site of a
gene (TSS) or in downstream exons (non-TSS).
SA vs CA CA vs CTRL SA vs CTRLTSS non-TSS TSS non-TSS TSS non-TSS
concordant 0.50 0.31 0.59 0.46 0.81 0.54discordant 0.03 0.09 0.03 0.03 0.00 0.08mixed 0.00 0.01 0.00 0.00 0.00 0.00unchanged 0.47 0.59 0.38 0.51 0.19 0.38ratio concordant/discordant 16.50 3.68 17.80 17.00 - 6.50
SA, therapy-resistant asthma; CA, controlled asthma; CTRL, healthy control.
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Figure legends
Figure E1. Overview of the analyses performed in this paper with Table and Figure
references.
Figure E2. Distribution of tag cluster annotation based on comparison with GENCODE
reference transcripts. bp, base pairs; S, sense orientation; AS, antisense orientation; TSS,
transcription start site; UTR, untranslated region; CDS, coding sequence.
Figure E3. Hierarchical clustering based on 680 tag clusters differentially expressed in any of
the three pairwise comparisons CTRL vs CA, CTRL vs SA, or CA vs SA in the glm analysis.
CTRL, healthy control; CA, controlled persistent asthma; SA, therapy-resistant asthma. The
distance measure for clustering of samples and tag clusters (expression in normalized tags per
million, tpm) was Spearman rank correlation.
Figure E4. Venn diagrams illustrating the overlap between differentially expressed tag
clusters in the conventional (“classic”) and cell counts-adjusted (“glm”) analyses of
differential expression for the three pairwise comparisons CA vs CTRL, SA vs CTRL, and SA
vs CA. CTRL, healthy control; CA, controlled persistent asthma; SA, therapy-resistant
asthma.
Figure E5. Estimated statistical power for SA vs CA in a glm analysis without adjustment for
cell composition (A) and with adjustment (B). Estimated power for SA vs CTRL in a glm
analysis without adjustment for cell composition (C) and with adjustment (D). Power was
estimated at an FDR of 0.1 for the sample size used in our manuscript as well as 2 and 3 times
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the sample size. Statistical power could not be estimated for CA vs CTRL since the software
could not produce a valid model based on this particular set of data.
Figure E6. The number of tag clusters significantly differentially expressed between SA and
CA increases with sample number during repeated (20x) subsampling, but remains very low
when group labels are randomized. Boxes are paired for each sample number, the first with
true group labels; the second with randomized labels.
Figure E7. Hierarchical clustering of (A) CD4+ and (B) CD8+ T cells from adults with
severe or nonsevere asthma and healthy controls based on microarray probes for GENCODE
transcripts that were differentially expressed in our CAGE data for the pairwise comparisons
between children with controlled asthma, therapy-resistant asthma, and healthy controls.
Expression data from Tsitsiou E, et al. Transcriptome analysis shows activation of circulating
CD8+ T cells in patients with severe asthma. J Allergy Clin Immunol 2012;129(1):95-103.
Figure E8. Hierarchical clustering of (A) CD4+ and (B) CD8+ T cells from adults with severe
or nonsevere asthma and healthy controls based on microarray probes for GENCODE
transcripts that were differentially expressed in our CAGE data for the pairwise glm
comparisons between children with controlled asthma, therapy-resistant asthma, and healthy
controls. Expression data from Tsitsiou E, et al. Transcriptome analysis shows activation of
circulating CD8+ T cells in patients with severe asthma. J Allergy Clin Immunol
2012;129(1):95-103.
Figure E9. Hierarchical clustering of CD8+ T cells based on microarray probes matching
CAGE tag clusters differentially expressed in the classic (top) or glm (bottom) edgeR
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analyses. Values in red denote the ”average unbiased” (AU) p-values from multiscale
bootstrap resampling in the pvclust R package. Note that an AU p-value > 0.95 is equivalent
to rejecting the hypothesis “the cluster does not exist” with significance level 0.05.
Figure E10. KEGG pathway diagram of natural killer (NK) cell-mediated signaling
illustrating the differences between controlled persistent asthma (CA) and therapy-resistant
asthma (SA). Upregulated genes are highlighted in blue for CA and red for SA.
Figure E11. Validation of novel transcription start sites by RT-PCR in two children from the
healthy control group (cDNA1 and cDNA2). The sequenced product is indicated with an
arrow when gel purification was performed before confirmation by Sanger sequencing.
Abbreviations: alt, alternative; TSS, transcription start site; cDNA, complementary DNA;
NRT, no reverse transcriptase negative control; bp, base pairs.
Figure E12. CAGE expression in tags per million reads (tpm) for (A) the novel alternative
transcription start site (TSS) and (B) the known TSS for ARHGAP15. Both TSSs are
significantly upregulated in therapy-resistant asthma (SA) in the glm analysis, but only the
novel TSS is significant without adjustment for cell counts. CTRL, healthy control; CA,
controlled persistent asthma; WBC, white blood cells.
Figure E13. Expression of novel TSSs in sorted leukocyte populations and airway epithelial
cells from the FANTOM5 CAGE dataset (Forrest ARR, Kawaji H, Rehli M, Baillie JK et al.
A promoter level mammalian expression atlas. Nature 2014; 507(7493):462-470). The
distance measure for clustering of samples and tag clusters (expression in log 2-transformed,
normalized tags per million, tpm) was Spearman rank correlation.
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Figure E14. Group-wise expression of differentially expressed tag clusters overlapping genes
linked to asthma in genome-wide association studies (GWAS). tpm, tags per million reads;
CTRL, healthy controls; CA, controlled persistent asthma; SA, therapy-resistant asthma.
Figure E15. Transcription factor binding site motif activities divided by sample group for the
top ten most significantly differentially active motifs in the pairwise comparison between SA
and CA for the -1000 to +200 bp promoter region. SA, therapy-resistant asthma; CA,
controlled persistent asthma; CTRL, healthy control.
Figure E16. Transcription factor binding site motif activities divided by sample group for the
top ten most significantly differentially active motifs in the pairwise comparison between CA
and CTRL for the -1000 to +200 bp promoter region. SA, therapy-resistant asthma; CA,
controlled persistent asthma; CTRL, healthy control.
Figure E17. Transcription factor binding site motif activities divided by sample group for the
top ten most significantly differentially active motifs in the pairwise comparison between SA
and CTRL for the -1000 to +200 bp promoter region. SA, therapy-resistant asthma; CA,
controlled persistent asthma; CTRL, healthy control.
Figure E18. Expression of transcription factors corresponding to motifs with significantly
different activity in the pairwise comparisons between sample groups for the -1000 to +200
bp promoter region. Samples are sorted leukocyte populations and airway epithelial cells from
the FANTOM5 CAGE dataset (Forrest ARR, Kawaji H, Rehli M, Baillie JK et al. A promoter
level mammalian expression atlas. Nature 2014; 507(7493):462-470). The distance measure
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for clustering of samples and tag clusters (expression in log 2-transformed, normalized tags
per million, tpm) was Spearman rank correlation.
Figure E19. Regulatory network for transcription factor motifs with significantly different
motif activity between CA and SA (adjusted p < 0.1) for the -300 to +100 bp promoter region.
Node color corresponds to fold change (blue, lower motif activity in SA; red, higher activity)
and node size is inversely proportional to the p-value. Edge color reflects gene-specific motif
activity (darker equals higher activity, i.e. stronger regulatory effect). Target genes are
represented by green circles for TFs and yellow circles for other genes. CA, controlled
persistent asthma; SA, therapy-resistant asthma; bp, base pairs; TSS, transcription start site.
Figure E20. Regulatory network for transcription factor motifs with significantly different
motif activity between CTRL and CA (adjusted p < 0.1) for the -300 to +100 bp promoter
region. Node color corresponds to fold change (blue, lower motif activity in SA; red, higher
activity) and node size is inversely proportional to the p-value. Edge color reflects gene-
specific motif activity (darker equals higher activity, i.e. stronger regulatory effect). Target
genes are represented by green circles for TFs and yellow circles for other genes. CTRL,
healthy control; CA, controlled persistent asthma; bp, base pairs; TSS, transcription start site.
Figure E21. Regulatory network for transcription factor motifs with significantly different
motif activity between CTRL and CA (adjusted p < 0.1) for the -1000 to +200 bp promoter
region. Node color corresponds to fold change (blue, lower motif activity in CA; red, higher
activity) and node size is inversely proportional to the p-value. Edge color reflects gene-
specific motif activity (darker equals higher activity, i.e. stronger regulatory effect). Target
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genes are represented by green circles for TFs and yellow circles for other genes. CTRL,
healthy control; CA, controlled persistent asthma; bp, base pairs; TSS, transcription start site.
Figure E22. Regulatory network for transcription factor motifs with significantly different
motif activity between CTRL and SA (adjusted p < 0.1) for the -300 to +100 bp promoter
region. Node color corresponds to fold change (blue, lower motif activity in SA; red, higher
activity) and node size is inversely proportional to the p-value. Edge color reflects gene-
specific motif activity (darker equals higher activity, i.e. stronger regulatory effect). Target
genes are represented by green circles for TFs and yellow circles for other genes. CTRL,
healthy control; SA, therapy-resistant asthma; bp, base pairs; TSS, transcription start site.
Figure E23. Regulatory network for transcription factor motifs with significantly different
motif activity between CTRL and SA (adjusted p < 0.1) for the -1000 to +200 bp promoter
region. Node color corresponds to fold change (blue, lower motif activity in SA; red, higher
activity) and node size is inversely proportional to the p-value. Edge color reflects gene-
specific motif activity (darker equals higher activity, i.e. stronger regulatory effect). Target
genes are represented by green circles for TFs and yellow circles for other genes. CTRL,
healthy control; SA, therapy-resistant asthma; bp, base pairs; TSS, transcription start site.
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