General updates about SBML and SBML Team activities

General updates about SBML and SBML Team activities

Michael Hucka and the rest of the SBML Team

Control and Dynamical SystemsDivision of Engineering and Applied Science

California Institute of TechnologyPasadena, CA, USA

2

Out

line 1. SBML.org Updates

2. SBML Development

3. SBML Team Software

3

SBML.org updates

4

SBML Software Guide changes

5

New version of the SBML software survey

6

Forthcoming in the SBML Software Guide

More data about SBML software in the world

More accurate data about SBML software in the world

Statistics about SBML software in the world

• Examples: data on 81 software tools reported between May–July

SupportsSBML Level 3

36% Does not yet support Level 3

64%

MIRIAMSBO

SBGNBioPAXCellML

SED-MLMFAML

PNMLSBOL

0 5 10 15 20

111

33

613

1416

Total # tools supporting other standardsPercentage supporting

SBML Level 3

7

Updated SBML Level 3 package activity table

http://sbml.org/Community/Wiki

8

SBML Development

9

SBML Development Process Progress

http://sbml.org/Documents/SBML_Development_Process10

Elaboration of process for Level 3 packages

11

Further elaboration of package voting criteria12

Writing L3 package specs

Proper draft spec. for Hierarchical Model Composition almost ready

New LaTeX templates for SBML package specifications

13

SBML Editor vote coming up

One new editor being replaced

• Nominations & voting open to anyone on sbml-discuss mailing list

Chris Jim Lucian

Sarah Frank Yours truly

14

SBML Editor vote coming up

One new editor being replaced

• Nominations & voting open to anyone on sbml-discuss mailing list

?Chris Jim Lucian

Sarah Frank Yours truly

14

SBML Team Software

15

libSBML 5.0.0: over 3400 downloads since April

0

100

200

300

400

500

600

700

800

April May June July August

188158195

201

103

6412293

52

52

147103126

119

40 331298268215

155

Downloads of all libSBML 5.0.0 distributions since April

WindowsLinuxMac OS XSource

16

Other software news

LibSBML, JSBML, SBMLToolbox, Online SBML Validator, others....

... Listen to Sarah, Frank, Nico & Andreas

17