OpenAire Sessions - Open Science - A view from the bench

Guillaume Lobet |

A VIEW FROM THE BENCH@guillaumelobet ! www.guillaumelobet.be

bit.ly/lobet-open-be"

my own views, as a scientist,

about the importance of open science

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WHO I AM ?2 0 0 3

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M A S T E R I N B I O - E N G I N E E R I N G

P H D AG R O N O M I C A L S C I E N C E S

P O S T- D O C TO R A L F E L L OW

U N I V E R S I T É C AT H O L I Q U E D E L O U VA I N

U N I V E R S I T É C AT H O L I Q U E D E L O U VA I N

U N I V E R S I T É D E L I È G E

2 0 1 6 V I S I T I N G S C I E N T I S T

F O R S C H U N G S Z E N T R U M J U L I C H

FNRS

BELSPO

FNRS

YOU

YOU

YOU

THANK YOU

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SCIENTIFIC PIPELINE

PA P E R SD ATA A N A LY S I SE X P E R I M E N T

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THE JIF CHURCH

Illustration from John R. McKiernan http://whyopenresearch.org/ bit.ly/academic_days_talk_2015 @

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NatureScienceCell

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IF

https://quantixed.wordpress.com/2015/05/05/wrong-number-a-closer-look-at-impact-factors/

I F = # C I TAT I O N S / # PA P E R S [ D U R I N G T H E PA S T 2 Y E A R S ]

IF = 42.352 …not representative…

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SCIENTIFIC PIPELINE

P O S T E R S

P R E S E N TAT I O N S

PA P E R S

L A B L I F E

R E A D PA P E R S

D ATA S E T S

C O D E

D ATA A N A LY S I SE X P E R I M E N T

R E V I E W I N G

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OPEN PAPERS

Illustration from John R. McKiernan

1

http://whyopenresearch.org/

Guillaume Lobet |

R E V I E W E R S

R E A DP U B L I S H

R E J E C T

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PUBLISHING PIPELINE

M E

E D I T O R

Guillaume Lobet |

0$ 0$

$ 0$

$$$ 0$

0$ $$$

$$$ $$$

R E V I E W E R S

R E A DP U B L I S H

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M E

Figure from Richard Sever (@cshperspectives), with data from Steve Royle (@clathrin)

REDUCED ACCESS

6 MONTHS

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PREPRINT SERVERS• archive while submitting • directly available • freely available • check specific journal policy…

http://www.sherpa.ac.uk/romeo/search.php

R E V I E W E R S

R E A DP U B L I S HM E

…

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OPEN DATA2

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LETS TALK ABOUT YOUR DATA

#EXPENSIVE

$TIME

CONSUMING

%CONTAINS MISTAKES

&ARE NOT 100%

EXPLOITED

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DATA REPOSITORIES / JOURNALS

• Decrease the cost of data

• Increase reproducibility

• Allow new findings

• Get more citations for your work

…

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https://opennessinitiative.org/

1. Data should be made publicly available.

2. Stimuli and materials should be made publicly available.

3. In case some data or materials are not open, clear reasons should be given why.

4. Documents containing details for interpreting any files or code, and how to compile and run any so!ware programs should be made available with the above items.

5. The location of all of these files should be advertised in the manuscript, and all files should be hosted by a reliable third party.

“We will not offer comprehensive review for,

nor recommend the publication of, any

manuscript that does not meet the following minimum

requirements.“

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RESEARCH PARASITES

Data Sharing. Longo and Drazen N Engl J Med 2016; 374:276-277

“people who had nothing to do with the design and execution of the study but use another group’s data for their own ends, possibly stealing from the research productivity planned by the data gatherers, or even use the

data to try to disprove what the original investigators had posited”

! #RESEARCHPARASITES

Illustration from @redpenblackpen

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OPEN CODE3

"Piled Higher and Deeper" by Jorge Cham www.phdcomics.com

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THE FAITH OF ACADEMIC SOFTWARES

tool development

funding for an in-house specialist

manual

' publication

use ????

no funding no publication no incentives

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NOBODY LIKES BLACKBOXES

Illustration from John R. McKiernan http://whyopenresearch.org/

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REPRODUCIBILITY IS CRITICAL

Estimating the reproducibility of psychological science Open Science Collaboration

Science 28 Aug 2015:Vol. 349, Issue 6251, pp.

$$$

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CODE REPOSITORIES

• Collaboration -> long term maintenance

• Open source -> better debugging

• Version control -> archiving

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OPEN EVERYTHING4

Picture from Pedro Albuquerque

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R E A D PA P E R S

EVERY STEP CAN BE OPEN

L A B L I F ER E V I E W I N G

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WRAPPING UP

GOOD FOR SCIENCE GOOD FOR YOU GOOD FOR THE PUBLIC

Reproducibility Long term vision

Error proofing

Visibility Valorise everything

More citations

Better use of public money

Access

Everything can be shared!

“The internet was built in the first place to

share scientific data”

Presentation on figsharebit.ly/lobet-open-be

Mark Hahnel figshare founder