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Most scientific developments are recorded in published papers and communicated via presentations. Scientific findings are presented within organizations, at conferences, via Webinars and other fora. Yet after delivery to an audience, important information is often left to wither on hard drives, document management systems and even the Web. Accessing the underlying data for scientific findings has been the Achilles Heel of researchers due to closed and proprietary systems. This presentation shows an alternative to sharing scientific information using a Linked Data approach.
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Conference for Semantics in Healthcare & Life Sciences
Boston MA http://www.iscb.org/cshals2014
Bernadette Hyland, CEO & co-founder
@BernHyland
This Presentation http://www.slideshare.net/
3RoundStones
Improving Scientific Information Sharing by Fostering Reuse of Presentation Material
!by Bernadette Hyland, David Wood, Luke Ruth, James Leigh
What we’re currently doing earns us a “No Pass“
• We spend considerable time preparing papers & presentations
• Yet important ideas as presentations & papers end up in a CMS or DMS without the data
• Data assessment and verification very challenging
• My ideas show up in presentations … sometimes with attribution … sometimes not
• I have no visibility on who is leveraging my content
In March, a cancer researcher at Amgen pharmaceutical company, based in Thousand Oaks, California, reported that its scientists had repeated experiments in 53 'landmark' papers, but managed to confirm findings from only six of the studies.
….. An internal survey at Bayer HealthCare, headquartered in Leverkusen, Germany, found that inconsistencies between published findings and the company’s own results caused delays or cancellations in about two-thirds of projects.
Today’s Data on the Web
Linked Data on the Web
my data
collector
collected by
measurement
Michael
first name
Hausenblaslast name
Person
a
a measurement
2011-01-01date
0
valueunits of measure
degrees Centigrade
...
Galway Airport
collected at
or
Callimachus Enterprise supports distributed, in-browser workflow creation, editing and publication using the
Linked Data model.
A data integration platform
Callimachus Enterprise
Helping organizations surface data and collaborate either behind the firewall or
securely on the cloud. !
Used by the Fortune 2000 and US Government agencies to collect, annotate and reuse data on the public Internet and within the enterprise.
Our approach …
User Profile
Document management:!• Documents & folders
associated with user profiles.
• Folders can contain data, documents and Callimachus applications.
• In-browser editing tools are available for many document types.
Social features:!• OpenAnnotation tags
and categories for all resources.
• Timeline of user activities.
• Exposed as Linked Data
Callimachus Enterprise
Document, Provenance & Annotation Metadata in RDF Turtle!# Document!</p/luke/3rs-improving-scientific-information-sharing-20131213.pdf> a </callimachus/enterprise/1.3/types/PortableDocument>, foaf:Document !! ;!ctrl:hasPage </p/luke/3rs-improving-scientific-information- sharing-20131213.pdf#page=1>!! ; dcterms:created "2013-12-13T21:57:44.000Z"^^xsd:dateTime! ! ; dcterms:title "3RS Improving Scientific Information Sharing 20131212"! ! ; foaf:depiction </p/luke/3rs-improving-scientific-information- sharing-20131213.pdf?thumbnail=page%3D1>!! ; prov:wasGeneratedBy </callimachus/changes/2014/02/12/t14427d585ddx793#provenance>! ! ; rdfs:label "3RS Improving Scientific Information Sharing 20131213" .! !# User!!<p/luke>! calli:hasComponent <p/luke/3rs-improving-scientific-information-sharing-20131213.pdf>! ; calli:hasComponent <p/luke/ann1392238163872> .!! ! # Annotations for the Document!</p/luke/ann1392238163872> a <callimachus/enterprise/1.3/types/Annotation>, oa:Annotation !! ;!oa:annotatedAt "2014-02-12T20:49:51.651Z"^^xsd:DateTime! ! ; oa:annotatedBy </p/luke> ! ! ; oa:hasBody </callimachus/enterprise/1.3/concepts/categories/education>! ! ; oa:hasBody </p/luke/ann1392238163872#body0>! ! ; oa:hasTarget </p/luke/3rs-improving-scientific-information-sharing-20131213.pdf> ! ! ; oa:motivatedBy oa:tagging ! ! ; prov:wasGeneratedBy </callimachus/changes/2014/02/12/ t14427d585ddx2510#provenance> .!
You Can Upload:• PDF files (presentations or documents)
• Text documents
• Image files (.png, .jpg, .gif, .svg)
• HTML files, CSS stylesheets, JavaScript files
• RDF data! (Turtle, N3, RDF/XML)
Developers can also create Linked Data applications!
Get Callimachus 1.3callimachusproject.org 3roundstones.com
Open Source Commercially supported
Use a Linked Data approach to
share scientific findings
Bernadette Hyland bhyland@3RoundStones.com
@BernHyland Direct +1-571-331-3758
M A N N I N G
David WoodMarsha ZaidmanLuke RuthWITH Michael Hausenblas
FOREWORD BY Tim Berners-Lee
Structured data on the Web
http://LinkedDataDeveloper.com
shared innovation™
This work is Copyright © 2011-2014 3 Round Stones Inc. It is licensed under the Creative Commons Attribution 3.0 Unported LicenseFull details at: http://creativecommons.org/licenses/by/3.0/
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