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University of Missouri Research ComputingTimothy Middelkoop, Ph.D. – Director of MU Research Computing Support Services (RCSS) Fall
2018
RCSS Infrastructure
Lewis by the Numbers
912 users; ~170 active in any one month 4+ Compute clusters; 9+ node types; 7+ networks
12+ Racks; 230+ nodes, 6120+ cores (HPC) 595TB parallel storage (HPC/Lustre) 1218TB Bulk storage allocated (HTC).
349 software packages (568 with versions) 4.5 million core⋅hours per month capacity 4 million core⋅hours Aug. 2018, 89% utilization;
32 million core⋅hours in 2017, 75% utilization; 7.8 million core⋅hours in 2016
100 Gigabit Science DMZ (IPv6 I2, GPN, R&E) 4+ Full time staff, 2 Students (Hiring! GA’s avail) 8,011,332 jobs run and counting
RCSS35%
MRI28%
BioCommunity12%
Investor25%
Investment in Lewis
HPC Compute and HPC Storage Services (New!)
Grant friendly investment in nodes ~$13,000/node Fairshare priority, on average 29,200 core∙hours/month
Ability to bust jobs to the entire cluster.
Use the newest cores for 5 years.
3TB of HPC group storage.
Setup engagement to help migrate workflows
Provide space, power, cooling, networking andmanages the hardware, software, security and scientific applications in exchange for idle time.
Large community based investment at scale Team with researchers and vendors to optimize
configuration to maximize research output.
Assistance with proposals Facilities, budgeting, and letters of commitment
Now Rack Scale!
Fall 2018 Upgrade33 Nodes, 1320 cores
100Gbps EDR Infinband,
25/100Gbps Ethernet storage
RCSS Services
Community High Performance Computing (HPC) – No charge
HPC Compute Service [$2,600/10 cores/5 years]
HPC Investor [grant friendly funding, ~$13,000/node]
HTC Storage [$120/TB/60Months] – economical, large, low compute intensity
HPC Storage [$15.50/TB/Month] – High Performance Parallel Storage
General Purpose Research Storage (GPRS) [$7/TB/Month] (Columbia, KC)
Researcher Managed Backup (ssh/rsync) in Kansas City [$120/TB/60Months]
Secure4: DCL4 compute cluster [$1,200/Project/Year, $560/User/Year]
100Gbps Science-DMZ for large transfers, AL2S and regional VLANs.
Teaching Cluster. 13 Nodes; 332 cores; MPI. clark.rnet.missouri.edu
Science Gateways (Limited Access)
User training and help sessions (Wednesdays, seminars, workshops)
Grant writing consultation (letters of support, quotes, configuration)
Shared Infrastructure
Workstation » Campus » National
Building community and capability through shared infrastructure
Shared infrastructure allows for bursting
Share software, tools, and data easily
Shared training and collaboration
Specialized Capabilities (BioCompute)
“The Lewis infrastructure allowed me to process over 2500 cattle genomes through GATK Best Practices in under 8 weeks (2.1M core hours) enabling genomic research at a scale few other Universities are capable of.” – Bob Schnabel
Campus, Regional, and National CI
MU Cyberinfrastructure Council. “… committed to providing and supporting the cyberinfrastructure necessary to excel in the discovery, dissemination, and application of knowledge in an environment of rapidly changing technologies so we may optimally fulfill our research, education, outreach, and economic development missions.” (https://doit.missouri.edu/ci)
Show Me CI – State Wide Cyberinfrastructure Group “Sharing Cyberinfrastructure information, education, and resources across the Show Me State” (http://ShowMeCI.org)
GPN Research Platform (GPN-RP) – connecting research across the region and the nation.
XSEDE Level 3 service provider (http://xsede.org)
Research Computing Campus Champions (https://xsede.org/campus-champions)
“Campus Research Computing (CaRC) Infrastructure Consortium” – national network of cyberinfrastructure professionals
Current Events
Planning future large GPU investment for Deep Learning
– contact to be a part of this! Two seed nodes (6xV100)
Open CI Engineer position
Open CI Facilitator position
CI-Day on May 7th 2018
SC18 next week/Scinet
Research Computing
Planning Meeting
Questions?
MU Research Computing Support Services
web: http://doit.missouri.edu/research
docs: http://docs.rnet.missouri.edu
email: rcss-support@missouri.edu
Timothy Middelkoop, Ph.D., MiddelkoopT@missouri.edu
https://vienna-wv.com/portal/tag/trees/
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