Middlesex Medical Image Repository Dr. Yu Qian y.qian@mdx.ac.uk

Middlesex Medical Image Repository

Dr. Yu Qian y.qian@mdx.ac.uk

Content

• Introduction of MIRAGE project• Introduction of Content-based Image Retrieval(CBIR)• Proposed framework for MIRAGE CBIR for 2D medical images CBIR for 3D medical images Image labelling

• what we have done and future work

PART IIntroduction of MIRAGE Project

MIRAGE(Middlesex medical Image Repository with a CBIR ArchivinG Environment)

Aim: To develop a repository of medical images benefiting MSc and research students in the immediate term and serve a wider community in the long term in providing a rich supply of medical images for data mining, to complement MU current online e-learning system, OASIS+.

Collaboration between three parties at MU, including EIS,CLQE and CIE. http://image.mdx.ac.uk/

JISC Innovation in the use of ICT for education and research.

http://www.jisc.ac.uk/

PART IIContent-Based Image Retrieval

(CBIR)

Content-Based Image Retrieval(CBIR)

• CBIR can index an image using visual contents that an image is carrying, such as colour, texture, shape and location.

Query by Example (QBE) Query by Feature (QBF) Query by Sketch(QBS)

• For example:

Colour-Based Retrieval

Texture-Based Retrieval

Shape-Based Retrieval

Query by Feature

Query by Sketch

Framework of Content-Based Image Retrieval

Compared with Text-Based Image Retrieval(TBIR)

Advantage Disadvantage

TBIR Semantic information

1) Heavy labour and time consumption2) Visual information scarcity3) Subjectivity4) Language problem

CBIR 1) Less time and labour intensity2) Objective retrieval results Semantic gap

CBIR for Medical Images

The need for CBIR For clinical diagnoses For teaching and research

CBIRS ASSERT(HRCT Lung) FICBDS(PET) CBIRS(Spine X-Ray) BASS (Breast Cancer)

PART IIIFramework for MIRAGE

Proposed Framework for MRIAGE

1) CBIR for 2D Medical Image ----GIFT

GIFT(GNU Image Finding Tool)

GIFT is open framework for content-based image retrieval and is developed by University of Geneva.

Query by example and multiple query Relevance Feedback Distributed architecture (Client - Server) MRML---C-S communication protocol

Demo:

GIFT Framework

2) CBIR for 3D Medical Images

Proposed Framework for 3D Image Retrieval

3D Texture Feature Extraction

1) 3D Grey Level Co-occurrence Matrices (3D GLCM)

2) 3D Wavelet Transform (3D WT)3) 3D Gabor Transform (3D GT)4) 3D Local Binary Pattern (3D LBP)

Similarity Measurement

Histogram Intersection(3D LBP)

Normalized Euclidean distance (3D GLCM,3D WT,3D GT)

i

ii IQIQD ,min,

2

,

i i

ii IQIQD

Experiment Results

Processing and Query time

Methods Processing time Query time

3D GLCM 10.65s 0.83s

3D WT 2.03s 0.11s

3D GT 14.3m 0.31s

3D LBP 0.78s 0.29s

3) Image Labelling

Image labelling

PART IVWhat We Have Done and Future Work

What We Have Done

• GIFT framework Uploaded and processed 73000 images• 3D image retrieval Created 3D feature database using four 3D

feature descriptors (One paper had been published in IADIS e-

health 2010).• Link MIRAGE to OASIS+

Future Work

• Continue working on image labelling • Plug 3D image retrieval into GIFT framework• System evaluation• Final report

Question?

Thanks