BRENDA Tutorial · BRENDA, directly linked to the Enzyme Summary Page. Enzyme Summary Page (cf....

BRENDA Tutorial…how to search for organisms

TaxTree

The BRENDA TaxTree Explorer is based on the Taxonomy Database of the NCBI.

(http://www.ncbi.nlm.nih.gov/taxonomy)

You can either browse or search the TaxTree.

You can run a search byentering the organism name, the synonym, or the scientificname.

On the result page thesystematic classification ofthe searched organisms isdisplayed in the Tree View.

Detailed information on theknown protein sequences ofthis organism

Detailed information on theknown protein sequences ofthis organism

A direct link to the NCBI

Taxonomy Database

A list of EC numbers

with organism-specific

enzyme data in

BRENDA, directly linked

to the Enzyme Summary

Page

Enzyme Summary Page (cf. BRENDA Tutorial - Enzyme Search -)

Enzyme Summary Page (cf. BRENDA Tutorial - Enzyme Search -)

You can choose the

organism of interest and

submit an organism-

specific view of the

enzyme data.

The synonyms of

the organism are

shown here.

You can use thebrowse function tofind an organism.

You can navigate alongthe hierarchical tree byclicking on the +-icon tofind the desiredorganism.

You can navigate alongthe hierarchical tree byclicking on the +-icon tofind the desiredorganism.

Similar to the results of theTaxTree „Search mode“ you canfind the details about the proteinsequences, the link to the NCBI Taxonomy, the synonyms, and tothe organism-specific enzyme datain BRENDA.