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BioGrid Texas(BiGTX)biogrid.uta.edu
Virtual Research ParkHealthcare Collaborative Network
BioGrid Texas(BiGTX)
• Collaborative research, development and information- sharing system for Life Sciences and Health Care– Virtual Research Park (VRP)– Healthcare Collaborative Network (HCN)
• Allows geographically dispersed R&D teams and health care organizations to collaborate, access grid and use custom group applications
• Utilizes high-performance grid computing technology infrastructure at UTA
BioGrid Research Groups
• Cancerous Lesion Change Detection – Skin Cancer Lesion Diagnostics & Image Analysis– UTSW Dermatology and UTA CSE/BME
• Virtual Rural Medicine– The intent of this project is to provide connectivity, medical
diagnostic utilities, medical image management tools and the real-time physician-patient interfaces between rural health clinics and community hospitals, and medical specialists concentrated in large urban areas.
– UTA, IBM and Valor Telecom• UTA Smart Hospital and Health System
– Simulated Hospital with Smart Mannequins, Virtual Learning/Training for Nurses and Physicians
– UTA School of Nursing, COS and COE
BioGrid Research Groups
• Biodefense– Rapid response to bioterror agents and emerging
biothreats– UTSW, UTA and MD Anderson Cancer Center
• Virtual Simulated Surgery– Virtual surgery using haptic devices for training
physicians in a wide variety of endoscopic and minimally invasive surgery techniques
– UTA Electrical Engineering and UTSW Medical Center Department of Surgery
• Pseudo and Retrogene Research Group– Chicken and Mouse Computational Genomics– UTA Biology, UTA CSE, and International Collaboration
BioGrid Research Groups
• Knowledge Mapping– Virtual brainstorming that takes advantage of the space between
ideas where discovery often occurs– UTA COS and Troubadour Technology
• Virtual Group Dynamics– The psychology of virtual group interactions and behavior as it
relates to productivity– UTA Psychology
• CONNECT– Wireless technology to provide communication services for disabled– UTA COS, COE and National
• Symptom Management– Group collaboration aimed at minimizing pain, fatigue, cognitive
impairment, nausea– UTA Psychology and MD Anderson Cancer Center
BioGrid Common User Interface
Single sign-on user login provides access to high-performance, personalized life science and health care portal environment
BioGrid Account Request
BioGrid UtilitiesCommunications and
Collaboration•e-mail•Calendar•Instant Message•Forums•User Groups•Chat•News Groups•System Alerts•e-Learning•Tech Support•Web Conference
•Video•Audio•Polling•Sharing•White Board•Brain Storm
BioGrid UtilitiesPersonalized News and
Information
BioGrid UtilitiesSkin Lesion Image Upload
BioGrid UtilitiesSkin Lesion Segmentation
Analysis
BioGrid UtilitiesSkin Lesion Segmentation
Analysis
BioGrid UtilitiesSkin Lesion Shape Analysis
BioGrid UtilitiesSkin Cancer Quiz
BioGrid UtilitiesSkin Lesion Query by
Example
BioGrid UtilitiesSkin Lesion Query by
Features
BioGrid UtilitiesSkin Lesion Query by
Diagnosis
BioGrid UtilitiesGenomics/Bioinformatics
Tools
BioGrid UtilitiesGenomics/Bioinformatics
Tools
BioGrid UtilitiesGenomics/Bioinformatics
Tools
BioGrid UtilitiesMedical/Biological Text
Mining
http://invention.swmed.edu/etblast/etblast.shtml
BioGrid UtilitiesMedical/Biological Text
Mining
BioGrid UtilitiesGrid Computing Tools
BioGrid UtilitiesGrid Computing Tools
BioGrid UtilitiesWeb Conferencing
BioGrid Utilities Web Conferencing
BioGrid Utilities Web Conferencing
BioGrid Utilities Knowledge Mapping
http://www.ideaweb.modwest.com/doc/summary.html
BioGrid Utilities e-Learning
BioGrid Utilities Application Support
BioGrid Hardware
• Horsepower provided by IBM hardware connected to UTA Distributed & Parallel Computing Cluster (DPCC)
node2
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node1
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node17
master.dpcc.uta.edu grid.dpcc.uta.edu
gfsnode1
gfsnode2
gfsnode3
lockserver
ArcusII 5.2 TB
Brocade 3200
Open
Open
Open
Open
Foundry FastIron 800
raid3
raid6
raid8
raid9
raid10
node54
node55
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node53
raid4 IDE 6TB
Linksys 3512
node64
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raid5 IDE 6TB
Linksys 3512
node74
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raid7 IDE 6TB
Linksys 3512
node34
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node33
raid1 IDE 6TB
Linksys 3512
node44
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Node50
node51
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node43
raid2 IDE 6TB
Linksys 3512
100 Mbs switch
Campus Campus
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