Atlases of the rat brain in stereotaxic ... - inmed.fr

Roustem KHAZIPOV, Dilyara ZAYNUTDINOVA, Elena OGIEVETSKY, Olga MITRUKHINA, Jean-Bernard MANENT, Alfonso REPRESA

ATLAS OF THE DEVELOPING RAT BRAIN IN STEREOTAXIC COORDINATES

INMED, INSERM U-901 & Aix-Marseille University, Marseille, FranceLaboratory of Neurobiology, Kazan Federal University, Kazan, Russia

Atlas presents a series of microphotographs of coronal 200 micron brain sections of a P1 Wistar rat (weight 8 g). Sections were cut vertical to the horizontal plane extending from bregma to lambda. Therefore using this atlas requires position of the rat head with bregma and lambda adjusted to the same height. Sections at bregma and lambda levels are marked with DiI-trace. Additional DiI trace across the whole brain was used to control slicing vertical to the horizontal plane. Sections were prepared from the paraformaldehyde and glutaraldehyde fixed brains through vibroslicing. No coloration was used. Microphotographs were made from the wet sections in oblique light. Atlas starts with a list of abbreviations and an outline of the brain view from above.For additional information see (reference to the Frontiers in Neuroanatomy data report).

List of Structures

3V 3rd Ventricle4V 4th VentricleAcb Accumbens nuAq Aqueduct SylviusAm Ambiguus nuA Amygdalaac anterior commissureArc Arcuate hypothalamic nuAu Auditory cortexBL Basolateral amygdala nuCA1 CA1CA3 CA3CPu Caudate PutamenCC Central Canalcp cerebral peduncleCg Cingulate cortexCl Claustrumcc corpus callossumCnf Cuneiform nuDG Dentate GyrusDB Diagonal BandDR Dorsal Raphe nuDLG Dorso Lateral GeniculateEnd Endopyriform nuEnt Entorhinal cortex7n Facial nerve7 Facial nufi fimbriaf fornix

F Frontal cortexg7 genu of facial nerveHb HabenulaH Hilus12 hypoglosal nucleushypo hypothalamusicp inferior cerebellar peduncleIC Inferior ColliculusIO Inferior Oliveic internal capsuleIPR Interpeduncular nuLa Lateral amygdala nulo lateral olfactory tractLSD Lateral Septal Dorsal nuLSI Lateral Septum IntermediateLT Lateral ThalamusLV Lateral VentricleLC Locus Coeruleusmt mamillothalamic tractMG Medial Geniculate nuMR Medial Raphe nuMS Medial Septal nuMe5 Mesencephalic trigemic numcp middle cerebellar peduncleM Motor cortexM2 Motor cortexm5 motor root trigeminus3 oculomotor nOB Olfactory BulbON Olfactory NuTu olfactory Tubercle

ox optic chiasmaopt optic tractO Orbital cortexPB Parabraquial nuPar Parietal cortexPAG Periaqueductal GrayPir Piriform cortexPn Pontine nuPnR Pontine Raphe nupc posterior commissureM1 primary Motor cortex py pyramidal tractRM Raphe Magnus nuRS Retrosplenial cortexrf rhinal fissures5 sensory root trigeminusSol Solitary nuS1 Somatosensory 1S1BF Somatosensory 1 Barrel FieldS SubiculumSN Substantia NigraSNC Substantia Nigra CompactaSNR Substantia Nigra ReticulataSTh Subthalamic nuscp superior cerebellar peduncleSC Superior ColliculusSCh Suprachiasmatic nuVT Ventral ThalamusVLG Ventro Lateral Geniculate nuVi Visual cortex

0 -1123456 -2 -3 -4 -7 -8 -9 mmBregma Lambda

Rat P1weight (g) - 8.00

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 7

Bregma 3.20 mmLambda 7.00 mm

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 8

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 9

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 10

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 11

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 12

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 13

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 14

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 15

Rat P1

CPuLVLSI

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 16

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 17

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 18

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 19

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 20

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 21

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 22

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 23

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 24

Bregma -0.20 mmLambda 3.60 mm

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 25

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 26

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 27

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 28

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 29

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 30

Rat P1

DG CA1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 31

Rat P1

DG CA1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 32

Rat P1

DGCA1H

RS Par

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 33

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 34

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 35

Rat P1

hypoEnt

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 36

Rat P1

hypo Arc

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 37

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 38

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 39

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 40Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 41

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 42

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 43

Bregma -4.00 mmLambda -0.20 mm

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 44

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 45

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 46

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 47

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 48

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 49

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 50

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 51

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 52

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 53

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 54

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 55

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 56

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 57

Rat P1

0 1 2 3 4 5 6123456

0+5 -5 -10Bregma

0 -5Lambda 5

Figure 58

Rat P1

Atlases of the rat brain in stereotaxic ... - inmed.fr

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