1 Basic Information Resources for Dentistry Jarmila Potomková, Ph.D. jarmila.potomkova@upol.cz...

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Basic Information Resources for Dentistry

Jarmila Potomková, Ph.D.jarmila.potomkova@upol.cz

Medical LibraryInstitute of Medical Biophysics

Palacky University Olomouc

Summer Semester 2015Web: http://www.lf.upol.cz --- Knihovna - Vzdělávání

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Seminar & Interactive Training Online

Course Structure

Module 1Search engines

Module 2Specialized databases for medical searches

BibliographicMedline/PubMed

KnowledgebasesDynamedUptodate

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Research Question 1

Risks and prevention of dental caries in schoolchildren in the past decade.

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Research Question 1 Search Terms CzechZubní kazKariesCaries

PrevencePreventivníProfylaxeProfylaktickýRiziko, rizika---------------------------Dítě, děti, pediatrický…

English(Dental) cariesDental/tooth/teeth decayDental/tooth/teeth cavity(-ies)

Prevent(ion)PreventiveProphylaxisProphylacticRisk(s)---------------------------Child(ren), pediatric, …..

Search EnginesDefinition Tool for finding information, especially on the Internet or World Wide Web.

Most consist of three parts: at least one program, called a spider, crawler, or bot, which “crawls” through the Internet gathering information; a database, which stores the gathered information; a search tool, with which users search through the database by typing in keywords describing the information desired.

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Baker L. Comparison of the top three search engines: Bing, Yahoo, Google?Search Engine Journal Oct 11, 2011.

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http://www.google.com

http://www.yahoo.com

http://www.bing.com

Search Engines

Google

http://www.google.com

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Google Advanced SearchFind pages with:

All of these words dental caries children

Any of these words prevention prophylaxis risk

You can narrow your results by: terms appearing in the title of the page

Google Option a) anywhere in the page - 710,000 items

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Google Option b) in the title of the page - 517 items

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GoogleQuantitative and Qualitative Analysis Terms appearing (a) anywhere in the page – 710,000 documents(b) in the title of the page - 537 documents

Document types: Websites Healthcare and medical information portals Patient information E-books (atlases, manuals, textbooks) Medical journals (tables of content – TOCs, abstracts, fulltexts) Practice guidelines Database links Medical images Pharmaceutical information Etc.

Attention should be paid to: Authorship Publication date

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European Union and Quality of Healthcare Websites

eEurope 2002: Quality Criteria for Health Related Websites

http://www.jmir.org/2002/3/e15/

Transparency of Health Related Content Authority of Health Related Content Providers Privacy and data protection of Health Data Updating of Health Related Information Accountability for Health Related Content Accessibility in Health Related Content

Deep Web Search Engines

Google ScholarJournal articles only

http://www.scholar.google.com

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Google Scholar Advanced SearchFind articlesWith all of the words

dental caries childrenWith at least one of the words

prevention prophylaxis risk Where my words occur

in the title of the articleReturn articles dated between

2001-2013

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Scholar GoogleFulltext availability, article categories

Free, open access Fee

subscription, membership, institutional license, pay-per-view Article types

original paper (clinical studies) reviews

Check your KnowledgeQuestion

What are the differences between search engines Google and Google Scholar?

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Check your KnowledgeAnswerAnswer

Google Scholar offers scientific articles whilst Google collects websites containing various document

types, formats and quality.

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Module 1Take-home-message1. Before information retrieval, formulate research questions, get

ready proper search terms.2. Search engine Google : use Advanced search.

3. Search engine Google Scholar : use to locate journal articles

4. Quality of health-related websites : European Commission policy paper (2002).

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Specialized Databases for Medical Searches

MEDLINE/PubMedBibliographic Database

http://pubmed.gov

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MEDLINE/PubMed Definition

Bibliographic database MEDLINE®, indexes more than 5,500 international scholarly journals published in 39 languages.

90 dental journals. Current size: 24 mill. records Retrospective: 1946 – until present Records include abstract, MeSH descriptors (Medical Subject

Headings) and LinkOut – more resources tool to locate fulltext articles, if available.

Searching is user-friendly. Basic and Advanced search Boolean operators to combine search terms (OR; AND;NOT) Additional filters, eg..

Type of articles Publication date Ages Etc..

Search ToolsBoolean Operators

AND dental caries AND AND prevenpreventiontion

OR prevention OROR prophylaxis OR risk

NOT

dental caries NOTNOT nutrition

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G.Boole 1815-1864

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Research Question 1 Terminology CzechZubní kazKariesCaries

PrevencePreventivníProfylaxeProfylaktickýRiziko, rizika---------------------------Dítě, děti, pediatrický…

English(Dental) cariesDental/tooth/teeth decayDental/tooth/teeth cavity(-ies)

Prevent(ion)PreventiveProphylaxisProphylacticRisk(s)---------------------------Child(ren), pediatric, …..

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MEDLINE/PubMedBasic Search

http://pubmed.gov

dental caries prevention children

MEDLINE/PubMedJednoduché vyhledávání : navigace

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http://pubmed.gov

Search PubMed : dental caries prevention children Search

MEDLINE/PubMedVýsledky Filtry

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MEDLINE/PubMedAdvanced Search

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http://pubmed.gov

PubMed Advanced Search Builder : ToolsOccurrence of Search Terms, Boolean Operators

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All Fields Title dental caries OR tooth decay Add to history

All Fields Title/Abstract prevention OR prophylaxis OR risk Add to historyHistory#1 dental caries[Title] OR tooth decay [Title]

#2 ((prevention[Title/Abstract]) OR prophylaxis[Title/Abstract]) OR risk[Title/Abstract]

#1 AND #2 Search#3 Filters: Ages --- Child 6-12 Search#4 Filters: Published in the last 10 years Search

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PubMed Advanced Search BuilderSearch Strategy

PubMed Advanced Search BuilderResults Summary Summary + abstract

Publication types MeSH Terms (Medical Subject Headings) Substances LinkOut – more resources Related citations Send to – File (Downloads) Send to – Email

Additional text Send to – Clipboard

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Research Question 2 Context

Council of European Dentistshttp://www.eudental.eu/

November 2007: Resolution on the profile of the dentist of the future.

http://www.eudental.eu/tags/27-health-workforce.html Relationship between oral and general health

Parodontitis may increase risk of cardiovascular and respiratory diseases, stroke, diabetes etc.

Need for complex evidence-based dental care in close contact with other healthcare professions.

CED Resolution on the profile of the dentist of the future. November 2007.

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Research Question 2 Terminology CzechOrální zdravíParodontOnemocnění parodontuParodontitida, parodontitisDásněGingivitida, gingivitis///////////////////////////Kardiovaskulární rizikoOnemocnění srdceMozková mrtvice

EnglishOral healthPeriodontPeriodontal diseasePeriodontitis

Gingiva, gums, gingivitis///////////////////////////Cardiovascular risk(Coronary) heart diseasesStroke

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Specialized Databases for Medical Searches

DynaMedSynoptic Knowledgebase

http://search.epnet.com

Access, navigation, functions Palacky University Faculty of Medicine and Dentistry computer

network /IP-address range Remote access (VPN; contact for help:

jarmila.potomkova@upol.cz)http://search.epnet.com

Search by keywords periodontitis cardiovascular/coronary/heart

Results Structured synoptic document based on published articles

Sometimes fulltext Always PubMed links Fine-tune results Search within text

„Levels of evidence“ References including reviews and guidelines

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Specialized Databases for Medical Searches

UPTODATEFulltext Knowledgebase

http://www.uptodate.com/online

Access, navigation, functionshttp://www.uptodate.com/online Palacky University Faculty of Medicine and Dentistry cmputer

network /IP-address range University Hospital computer network /IP-range Remote access (VPN; contact for help:

jarmila.potomkova@upol.cz)

Keyword search periodontitis cardiovascular/coronary/heart

Evidence-based overviews using primary published resources after critical appraisal

Up to 8,000 documents 14 specialties More than 80,000 pages (text, graphs, tables, images), PubMed links Drug database Updated quarterly

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Module 2Take-home message1. Use bibliographic database MEDLINE/PubMed to answer research question „Dental caries risk and prevention in schoolchildren“

2. Tools for precise building search strategy (occurrence of search terms in different database fields, application of Boolean operators, additional filters).

3. Navigation across results (citation – structured abstract – fulltext sources).

Modul 2Take-home message4. Knowledgebases are convenient for searching more

complex research questions, eg. interaction betwen oral and general health, in particular cardiovascular risks.

5. DYNAMED is a synoptic database, fee-based. Hyperlinked references with some fulltext, navigated to PubMed).

6. UPTODATE is a fulltext knowledgebase; hyperlinked graphs, tables, images, PubMed references.

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